Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2529 Punica granatum HOM05D006485 ORTHO05D006108 6.0e-113 412.1 506 100.0
Eucgr.A01582 Eucalyptus grandis HOM05D006485 ORTHO05D006108 1.8e-21 108.2 88 73.9
Atru.chr8.1691 Acer truncatum HOM05D006485 ORTHO05D006108 1.1e-18 99.0 129 47.3
MELO3C009418.2 Cucumis melo HOM05D006485 ORTHO05D006108 5.6e-18 96.7 131 47.3
ClCG10G019560 Citrullus lanatus HOM05D006485 ORTHO05D006108 1.2e-17 95.5 133 48.9
PSO339G3752 Papaver somniferum HOM05D006485 ORTHO05D006108 1.5e-15 88.6 134 43.3
TAR623G0376 Trochodendron aralioides HOM05D006485 ORTHO05D006108 2.0e-15 88.2 113 46.0
Gorai.009G410100 Gossypium raimondii HOM05D006485 ORTHO05D006108 5.7e-15 86.7 120 49.2
Gohir.D09G139000 Gossypium hirsutum HOM05D006485 ORTHO05D006108 7.5e-15 86.3 161 41.6
Gorai.006G159500 Gossypium raimondii HOM05D006485 ORTHO05D006108 7.5e-15 86.3 161 41.6
Potri.015G060600 Populus trichocarpa HOM05D006485 ORTHO05D006108 9.8e-15 85.9 92 57.6
COL.COLO4_22277 Corchorus olitorius HOM05D006485 ORTHO05D006108 2.2e-14 84.7 113 48.7
FAN05G3442 Fragaria x ananassa HOM05D006485 ORTHO05D006108 3.7e-14 84.0 140 40.7
A04p28050 Brassica napus HOM05D006485 ORTHO05D006108 8.3e-14 82.8 125 48.8
C04p65460 Brassica napus HOM05D006485 ORTHO05D006108 8.3e-14 82.8 125 48.8
CsaV3_3G036640 Cucumis sativus L. HOM05D006485 ORTHO05D006108 8.3e-14 82.8 132 44.7
FAN14G0187 Fragaria x ananassa HOM05D006485 ORTHO05D006108 8.3e-14 82.8 129 42.6
BolC4t28034H Brassica oleracea HOM05D006485 ORTHO05D006108 1.1e-13 82.4 125 48.8
BcaB06g28954 Brassica carinata HOM05D006485 ORTHO05D006108 1.4e-13 82.0 125 48.8
BraA04t18292Z Brassica rapa HOM05D006485 ORTHO05D006108 1.8e-13 81.6 125 48.0
Gohir.A09G142800 Gossypium hirsutum HOM05D006485 ORTHO05D006108 1.8e-13 81.6 161 40.4
TWI53G1251 Tripterygium wilfordii HOM05D006485 ORTHO05D006108 2.4e-13 81.3 128 43.0
BcaB06g28951 Brassica carinata HOM05D006485 ORTHO05D006108 3.2e-13 80.9 123 48.8
Ciclev10013512m.g Citrus clementina HOM05D006485 ORTHO05D006108 3.2e-13 80.9 114 48.2
Gohir.A04G067600 Gossypium hirsutum HOM05D006485 ORTHO05D006108 3.2e-13 80.9 114 50.0
PSO063G6051 Papaver somniferum HOM05D006485 ORTHO05D006108 3.2e-13 80.9 141 43.3
FAN05G4746 Fragaria x ananassa HOM05D006485 ORTHO05D006108 5.4e-13 80.1 140 40.0
Migut.L01738 Erythranthe guttata HOM05D013674 ORTHO05D006108 7.0e-13 79.7 138 44.2
Cfa016504 Carpinus fangiana HOM05D006485 ORTHO05D006108 5.9e-12 76.6 84 56.0
Gohir.D04G106200 Gossypium hirsutum HOM05D006485 ORTHO05D006108 5.9e-12 76.6 109 50.5
Peaxi162Scf00500g00067 Petunia axillaris HOM05D006485 ORTHO05D006108 5.9e-12 76.6 115 41.7
Cfa020727 Carpinus fangiana HOM05D006485 ORTHO05D006108 1.0e-11 75.9 92 53.3
Thhalv10017525m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 1.0e-11 75.9 84 56.0
FAN02G3096 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-11 75.9 131 43.5
FAN09G1969 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.0e-11 75.9 131 43.5
SalBow5G2944 Salvia bowleyana HOM05D006485 ORTHO05D006108 1.0e-11 75.9 133 41.4
FAN09G4412 Fragaria x ananassa HOM05D006485 ORTHO05D006108 1.3e-11 75.5 131 42.7
QL07p041110 Quercus lobata HOM05D006485 ORTHO05D006108 1.3e-11 75.5 87 56.3
Thecc.05G077700 Theobroma cacao HOM05D006485 ORTHO05D006108 1.3e-11 75.5 83 57.8
Nitab4.5_0000680g0110 Nicotiana tabacum HOM05D006485 ORTHO05D006108 2.3e-11 74.7 90 46.7
Carub.0004s1846 Capsella rubella HOM05D006485 ORTHO05D006108 3.0e-11 74.3 99 48.5
FvH4_6g17400 Fragaria vesca HOM05D006485 ORTHO05D006108 3.0e-11 74.3 131 42.7
CARHR130920 Cardamine hirsuta HOM05D006485 ORTHO05D006108 5.0e-11 73.6 99 48.5
Nitab4.5_0006314g0010 Nicotiana tabacum HOM05D006485 ORTHO05D006108 5.0e-11 73.6 90 44.4
Glyma.10G064400 Glycine max HOM05D013674 ORTHO05D006108 6.6e-11 73.2 151 37.1
RcHm_v2.0_Chr3g0471651 Rosa chinensis HOM05D006485 ORTHO05D006108 6.6e-11 73.2 154 40.9
AT2G36640 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 8.6e-11 72.8 84 53.6
Haze_19505 Corylus avellana HOM05D006485 ORTHO05D006108 8.6e-11 72.8 82 51.2
Aa31LG5G21840 Aethionema arabicum HOM05D006485 ORTHO05D006108 1.5e-10 72.0 113 45.1
A05p09230 Brassica napus HOM05D006485 ORTHO05D006108 1.5e-10 72.0 82 56.1
CiPaw.10G003000 Carya illinoinensis HOM05D006485 ORTHO05D006108 1.5e-10 72.0 93 53.8
Lj3C1005T3 Lonicera japonica HOM05D011389 ORTHO05D006108 3.3e-10 70.9 114 41.2
MD09G1267600 Malus domestica HOM05D006485 ORTHO05D006108 4.3e-10 70.5 102 48.0
Nn6g35112 Nelumbo nucifera HOM05D006485 ORTHO05D006108 4.3e-10 70.5 132 43.2
Sp4g18920 Schrenkiella parvula HOM05D006485 ORTHO05D006108 4.3e-10 70.5 100 48.0
PGSC0003DMG400002731 Solanum tuberosum HOM05D006485 ORTHO05D006108 4.3e-10 70.5 105 44.8
AL4G32820 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 5.6e-10 70.1 99 46.5
Carub.0005s1954 Capsella rubella HOM05D006485 ORTHO05D006108 5.6e-10 70.1 83 51.8
Thhalv10010945m.g Eutrema salsugineum HOM05D006485 ORTHO05D006108 5.6e-10 70.1 102 47.1
A04p06430 Brassica napus HOM05D006485 ORTHO05D006108 7.3e-10 69.7 101 50.5
BraA04t16347Z Brassica rapa HOM05D006485 ORTHO05D006108 7.3e-10 69.7 101 50.5
BcaC02g07584 Brassica carinata HOM05D006485 ORTHO05D006108 1.2e-09 68.9 121 46.3
CARHR162930 Cardamine hirsuta HOM05D006485 ORTHO05D006108 1.2e-09 68.9 92 48.9
EL10Ac7g16753 Beta vulgaris HOM05D006485 ORTHO05D006108 1.6e-09 68.6 87 44.8
C04p39920 Brassica napus HOM05D006485 ORTHO05D006108 2.1e-09 68.2 101 50.5
CANSAT80G1413 Cannabis sativa HOM05D006485 ORTHO05D006108 2.8e-09 67.8 65 53.8
Sopen09g003560 Solanum pennellii HOM05D006485 ORTHO05D006108 2.8e-09 67.8 105 44.8
Atru.chr8.1686 Acer truncatum HOM05D006485 ORTHO05D006108 3.6e-09 67.4 84 50.0
Lalb_Chr06g0172031 Lupinus albus HOM05D013674 ORTHO05D006108 4.7e-09 67.0 128 39.1
Manes.08G018000 Manihot esculenta HOM05D006485 ORTHO05D006108 6.2e-09 66.6 112 42.0
Solyc09g008770.3 Solanum lycopersicum HOM05D006485 ORTHO05D006108 8.0e-09 66.2 105 43.8
GSVIVG01033739001 Vitis vinifera HOM05D006485 ORTHO05D006108 8.0e-09 66.2 83 53.0
Sp5g09280 Schrenkiella parvula HOM05D006485 ORTHO05D006108 1.0e-08 65.9 85 50.6
BcaC02g09194 Brassica carinata HOM05D006485 ORTHO05D006108 1.4e-08 65.5 101 48.5
BolC4t25563H Brassica oleracea HOM05D006485 ORTHO05D006108 1.4e-08 65.5 101 48.5
Ca_08949_v3 Cicer arietinum L. HOM05D013121 ORTHO05D015407 1.4e-08 65.5 157 35.7
arahy.Tifrunner.gnm1.ann1.YET5HL Arachis hypogaea HOM05D013121 ORTHO05D015407 2.3e-08 64.7 114 43.0
Nn2g13931 Nelumbo nucifera HOM05D006485 ORTHO05D006108 2.3e-08 64.7 157 35.7
Prupe.7G121500 Prunus persica HOM05D006485 ORTHO05D006108 2.3e-08 64.7 92 46.7
Sc02g0001270 Simmondsia chinensis HOM05D006485 ORTHO05D006108 2.3e-08 64.7 113 45.1
AT3G53040 Arabidopsis thaliana HOM05D006485 ORTHO05D006108 4.0e-08 63.9 126 39.7
Cfa016502 Carpinus fangiana HOM05D006485 ORTHO05D006108 4.0e-08 63.9 62 53.2
Lj1g0021486 Lotus japonicus HOM05D013121 ORTHO05D015407 4.0e-08 63.9 152 32.2
Hund12313 Selenicereus undatus HOM05D006485 ORTHO05D006108 4.0e-08 63.9 89 46.1
BcaB02g08540 Brassica carinata HOM05D006485 ORTHO05D006108 6.8e-08 63.2 102 45.1
unitig_746.g26769 Utricularia gibba HOM05D006485 ORTHO05D006108 8.9e-08 62.8 87 44.8
BcaC02g11777 Brassica carinata HOM05D006485 ORTHO05D006108 1.2e-07 62.4 83 44.6
BolC4t22800H Brassica oleracea HOM05D006485 ORTHO05D006108 1.2e-07 62.4 83 44.6
AUR62040165 Chenopodium quinoa HOM05D006485 ORTHO05D006108 1.2e-07 62.4 122 41.0
arahy.Tifrunner.gnm1.ann1.DLQI02 Arachis hypogaea HOM05D013121 ORTHO05D015407 2.0e-07 61.6 108 43.5
Ca_11604_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 2.0e-07 61.6 46 63.0
Ca_12340_v3 Cicer arietinum L. HOM05D013674 ORTHO05D006108 2.0e-07 61.6 46 63.0
AL5G33870 Arabidopsis lyrata HOM05D006485 ORTHO05D006108 2.6e-07 61.2 81 46.9
DCAR_020791 Daucus carota HOM05D006485 ORTHO05D006108 3.4e-07 60.8 131 42.7
SGA_v2.0_scaffold277G46722 Striga asiatica HOM05D006485 ORTHO05D006108 3.4e-07 60.8 119 42.9
Aqoxy1G01006 Aquilegia oxysepala HOM05D006485 ORTHO05D006108 4.4e-07 60.5 114 39.5
Glyma.13G149000 Glycine max HOM05D013674 ORTHO05D006108 4.4e-07 60.5 151 37.7
SHI27750 Sapria himalayana HOM05D006485 ORTHO05D006108 4.4e-07 60.5 81 49.4
VMungo0720G1050 Vigna mungo HOM05D013674 ORTHO05D004088 4.4e-07 60.5 53 56.6
AUR62037914 Chenopodium quinoa HOM05D006485 ORTHO05D006108 5.8e-07 60.1 125 39.2
THA.LOC104827498 Tarenaya hassleriana HOM05D006485 ORTHO05D006108 9.8e-07 59.3 85 48.2
Ah.15g091240 Amaranthus hybridus HOM05D011389 ORTHO05D006108 1.3e-06 58.9 93 45.2
DCAR_020790 Daucus carota HOM05D006485 ORTHO05D006108 1.7e-06 58.5 89 48.3
Psat6g077640 Pisum sativum HOM05D013674 ORTHO05D006108 3.7e-06 57.4 46 58.7
Lj5g0014301 Lotus japonicus HOM05D036014 ORTHO05D006108 4.9e-06 57.0 130 38.5
Medtr1g061730 Medicago truncatula HOM05D013674 ORTHO05D006108 4.9e-06 57.0 46 58.7
Phvul.007G225200 Phaseolus vulgaris HOM05D013674 ORTHO05D006108 6.4e-06 56.6 67 46.3
TPR.G5694 Trifolium pratense HOM05D013674 ORTHO05D006108 6.4e-06 56.6 63 49.2


User provided reference genes

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