Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.8e-172 608.6 322 100.0
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 1.6e-111 406.8 274 74.5
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 7.2e-104 381.3 266 67.7
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 1.1e-101 374.0 266 66.5
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 7.4e-101 371.3 266 64.7
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 9.7e-101 370.9 269 65.4
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 1.7e-100 370.2 273 64.8
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 1.1e-99 367.5 270 66.3
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.4e-99 367.1 273 64.1
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 4.1e-99 365.5 273 64.1
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 3.5e-98 362.5 272 65.4
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 7.7e-98 361.3 272 63.2
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 7.7e-98 361.3 272 64.7
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 1.3e-97 360.5 272 63.2
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.5e-96 356.3 273 62.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-96 355.5 273 62.3
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 5.5e-96 355.1 324 56.8
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 5.5e-96 355.1 273 63.0
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 5.5e-96 355.1 273 63.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 4.7e-95 352.1 273 63.4
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.0e-94 350.9 273 61.5
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.4e-94 350.5 273 61.5
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-94 349.7 322 55.3
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.3e-94 349.7 322 55.3
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 2.3e-94 349.7 272 61.8
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.0e-94 349.4 277 59.9
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 5.2e-94 348.6 271 62.4
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 1.5e-93 347.1 270 62.2
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.5e-93 347.1 273 60.8
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.0e-93 346.7 270 61.9
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.6e-93 346.3 271 62.4
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 2.6e-93 346.3 268 60.4
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 3.3e-93 345.9 275 61.5
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 7.5e-93 344.7 273 58.2
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 1.3e-92 344.0 319 56.7
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.7e-92 343.6 270 60.7
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 1.7e-92 343.6 269 62.5
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 2.2e-92 343.2 276 60.9
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 2.2e-92 343.2 267 59.6
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 6.3e-92 341.7 268 61.6
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 8.2e-92 341.3 269 61.7
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 1.8e-91 340.1 269 61.7
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 4.1e-91 339.0 277 58.8
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 5.3e-91 338.6 269 58.4
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 5.3e-91 338.6 267 61.0
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 7.0e-91 338.2 273 57.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.0e-90 336.7 266 61.7
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 2.7e-90 336.3 267 58.4
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 7.7e-90 334.7 275 59.6
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 2.2e-89 333.2 273 60.4
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 2.9e-89 332.8 277 58.5
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 5.0e-89 332.0 267 59.2
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 6.5e-89 331.6 269 59.5
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 6.5e-89 331.6 340 54.1
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 8.5e-89 331.3 267 59.2
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 1.6e-87 327.0 268 57.5
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 6.1e-87 325.1 271 58.3
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 6.1e-87 325.1 267 59.6
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 1.8e-86 323.6 268 59.3
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 1.8e-86 323.6 270 57.4
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 1.8e-86 323.6 269 56.1
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 2.3e-86 323.2 266 60.9
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 6.8e-86 321.6 272 56.2
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.2e-85 320.9 269 55.0
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 1.5e-85 320.5 269 54.6
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.5e-85 320.5 269 55.0
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.5e-85 320.5 267 56.2
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 2.6e-85 319.7 269 55.8
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 9.8e-85 317.8 267 55.8
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 1.7e-84 317.0 267 54.7
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.8e-84 316.2 284 57.0
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 2.8e-84 316.2 270 54.8
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.8e-84 315.5 265 55.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 1.2e-82 310.8 268 54.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 1.6e-82 310.5 267 54.7
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.0e-82 310.1 270 54.4
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 1.0e-81 307.8 269 53.9
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 2.9e-81 306.2 269 53.5
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 3.8e-81 305.8 269 54.3
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 3.8e-81 305.8 271 53.1
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 5.0e-81 305.4 269 54.3
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 5.0e-81 305.4 328 50.9
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 6.5e-81 305.1 268 54.5
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 6.5e-81 305.1 275 55.6
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 8.5e-81 304.7 271 53.9
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 1.5e-80 303.9 270 54.1
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 1.5e-80 303.9 271 53.9
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 1.9e-80 303.5 272 53.3
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 2.5e-80 303.1 268 53.0
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 4.2e-80 302.4 272 55.5
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 7.2e-80 301.6 269 55.4
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 2.7e-79 299.7 273 52.4
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 1.4e-78 297.4 269 51.3
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.8e-78 295.0 272 51.8
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 6.8e-78 295.0 327 46.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 1.5e-77 293.9 274 50.4
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 5.7e-77 292.0 274 52.6
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.3e-76 290.8 309 47.2
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 2.2e-76 290.0 270 54.1
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 2.8e-76 289.7 274 50.4
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 6.3e-76 288.5 303 48.5
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.4e-75 286.6 278 52.2
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 9.2e-75 284.6 269 51.7
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 7.7e-74 281.6 271 48.7
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 7.7e-74 281.6 270 51.1
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.0e-73 281.2 280 49.6
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 2.3e-73 280.0 267 48.3
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.5e-72 276.6 198 66.7
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 3.3e-72 276.2 269 48.3
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 1.2e-71 274.2 273 49.1
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 1.6e-71 273.9 240 54.6
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 2.8e-71 273.1 267 47.9
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 3.4e-69 266.2 267 46.8
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 7.5e-69 265.0 206 62.1
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 1.1e-67 261.2 280 49.6
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-67 260.8 204 62.3
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.4e-67 260.8 204 62.3
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 9.2e-67 258.1 254 50.0
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 4.6e-66 255.8 268 46.6
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 3.9e-65 252.7 197 62.9
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 5.6e-64 248.8 263 47.9
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.1e-63 246.9 278 45.3
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.8e-62 243.8 238 48.7
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 6.8e-62 241.9 265 44.9
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 1.2e-61 241.1 243 49.8
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 4.6e-58 229.2 270 45.2
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 9.5e-56 221.5 172 59.9
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.5e-53 214.2 268 43.3
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 6.4e-52 208.8 264 40.5
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 6.4e-52 208.8 264 40.2
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 8.3e-52 208.4 280 42.1
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.1e-50 203.8 273 42.9
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 2.1e-50 203.8 264 39.8
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 9.5e-48 194.9 177 53.7
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.6e-47 193.0 174 52.9
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 5.2e-46 189.1 260 38.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 3.1e-30 136.7 206 35.4
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 2.9e-28 130.2 95 67.4
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 1.5e-21 107.8 208 32.7
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 1.5e-21 107.8 127 40.9
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 4.2e-19 99.8 135 41.5
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 1.6e-18 97.8 95 49.5
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-17 94.7 117 43.6
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 1.3e-17 94.7 117 43.6
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 2.8e-15 87.0 89 47.2
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 1.8e-14 84.3 263 25.1
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 3.1e-14 83.6 68 51.5
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 1.2e-13 81.6 263 27.8
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.4e-11 74.7 236 26.7


User provided reference genes

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