Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2427 Punica granatum HOM05D006242 ORTHO05D007936 7.8e-169 597.0 300 100.0
Dinv10532 Davidia involucrata HOM05D006242 ORTHO05D007936 1.1e-117 427.2 295 71.2
Potri.001G159600 Populus trichocarpa HOM05D006242 ORTHO05D007936 1.0e-115 420.6 294 69.4
Atru.chr10.429 Acer truncatum HOM05D006242 ORTHO05D007936 3.8e-115 418.7 300 71.3
QL11p013482 Quercus lobata HOM05D006242 ORTHO05D007936 3.2e-114 415.6 291 72.2
Sabra01G0132400 Salix brachista HOM05D006242 ORTHO05D007936 4.2e-114 415.2 293 68.9
GSVIVG01012122001 Vitis vinifera HOM05D006242 ORTHO05D007936 2.7e-113 412.5 295 70.5
Duzib248G1438 Durio zibethinus HOM05D006242 ORTHO05D007936 3.5e-113 412.1 299 70.2
Cfa000677 Carpinus fangiana HOM05D006242 ORTHO05D007936 7.9e-113 411.0 291 70.4
Prupe.4G115300 Prunus persica HOM05D006242 ORTHO05D007936 1.0e-112 410.6 293 68.6
Haze_06141 Corylus avellana HOM05D006242 ORTHO05D007936 1.3e-112 410.2 291 71.1
Manes.03G074100 Manihot esculenta HOM05D006242 ORTHO05D007936 1.8e-112 409.8 293 70.0
MD10G1229500 Malus domestica HOM05D006242 ORTHO05D007936 1.1e-111 407.1 293 68.3
TWI38G1455 Tripterygium wilfordii HOM05D006242 ORTHO05D007936 5.7e-111 404.8 298 68.5
Eucgr.B01565 Eucalyptus grandis HOM05D006242 ORTHO05D007936 1.3e-110 403.7 297 68.7
Hma1.2p1_1499F.1_g287250 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.3e-110 403.7 292 66.8
Rhsim06G0063600 Rhododendron simsii HOM05D006242 ORTHO05D007936 3.7e-110 402.1 293 69.3
DCAR_007782 Daucus carota HOM05D006242 ORTHO05D007936 8.2e-110 401.0 295 67.1
Cpa.g.sc30.139 Carica papaya HOM05D006242 ORTHO05D007936 1.4e-109 400.2 290 67.9
Thecc.02G006000 Theobroma cacao HOM05D006242 ORTHO05D007936 2.0e-108 396.4 298 67.8
ECA232G2813 Erigeron canadensis HOM05D006242 ORTHO05D007936 5.9e-108 394.8 299 66.9
MBI02_g26996_MAGBIO Magnolia biondii HOM05D006242 ORTHO05D007936 7.6e-108 394.4 298 65.4
CAN.G79.44 Capsicum annuum HOM05D006242 ORTHO05D007936 1.0e-107 394.0 294 66.7
Actinidia22421 Actinidia chinensis HOM05D006242 ORTHO05D007936 2.2e-107 392.9 293 68.6
Gohir.D12G047300 Gossypium hirsutum HOM05D006242 ORTHO05D007936 2.2e-107 392.9 293 67.9
Gorai.008G050000 Gossypium raimondii HOM05D006242 ORTHO05D007936 2.2e-107 392.9 293 67.9
Solyc02g031980.3 Solanum lycopersicum HOM05D006242 ORTHO05D007936 2.9e-107 392.5 294 66.3
PGSC0003DMG400014939 Solanum tuberosum HOM05D006242 ORTHO05D007936 3.8e-107 392.1 294 66.0
RcHm_v2.0_Chr5g0020621 Rosa chinensis HOM05D006242 ORTHO05D007936 1.1e-106 390.6 293 66.9
Gohir.A12G048500 Gossypium hirsutum HOM05D006242 ORTHO05D007936 1.4e-106 390.2 293 67.2
PSO675G0930 Papaver somniferum HOM05D006242 ORTHO05D007936 3.2e-106 389.0 295 64.1
FvH4_3g12650 Fragaria vesca HOM05D006242 ORTHO05D007936 7.2e-106 387.9 293 66.6
Nitab4.5_0008021g0020 Nicotiana tabacum HOM05D006242 ORTHO05D007936 1.2e-105 387.1 309 64.7
PSO541G0450 Papaver somniferum HOM05D006242 ORTHO05D007936 1.2e-105 387.1 295 64.1
CANSAT35G0032 Cannabis sativa HOM05D006242 ORTHO05D007936 2.7e-105 386.0 293 65.5
FAN21G1956 Fragaria x ananassa HOM05D006242 ORTHO05D007936 6.1e-105 384.8 293 66.2
Medtr1g050428 Medicago truncatula HOM05D006242 ORTHO05D007936 7.9e-105 384.4 297 64.6
HanXRQChr12g0381511 Helianthus annuus HOM05D006242 ORTHO05D007936 1.0e-104 384.0 293 67.6
Cc00_g22870 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-104 383.6 293 66.2
FAN25G2599 Fragaria x ananassa HOM05D006242 ORTHO05D007936 1.3e-104 383.6 293 65.9
Ca_19722_v3 Cicer arietinum L. HOM05D006242 ORTHO05D007936 3.0e-104 382.5 303 63.4
Thhalv10017018m.g Eutrema salsugineum HOM05D006242 ORTHO05D007936 3.0e-104 382.5 297 64.6
A05p10660 Brassica napus HOM05D003281 ORTHO05D004128 8.7e-104 380.9 297 64.6
Lj1A1147G28 Lonicera japonica HOM05D006242 ORTHO05D007936 1.5e-103 380.2 272 72.1
Lj6g0025800 Lotus japonicus HOM05D006242 ORTHO05D007936 1.9e-103 379.8 293 63.5
Oeu058943.1 Olea europaea HOM05D006242 ORTHO05D007936 2.5e-103 379.4 310 62.3
Carub.0004s1673 Capsella rubella HOM05D006242 ORTHO05D007936 9.7e-103 377.5 294 63.6
C04p13760 Brassica napus HOM05D003281 ORTHO05D004128 2.8e-102 375.9 297 63.6
BolC4t22966H Brassica oleracea HOM05D003281 ORTHO05D004128 2.8e-102 375.9 297 63.6
MSTRG.20044 Avicennia marina HOM05D006242 ORTHO05D007936 4.8e-102 375.2 291 63.6
CsaV3_6G052870 Cucumis sativus L. HOM05D006242 ORTHO05D007936 1.4e-101 373.6 291 64.3
Lalb_Chr19g0129141 Lupinus albus HOM05D006242 ORTHO05D007936 1.4e-101 373.6 293 62.8
EL10Ac7g16757 Beta vulgaris HOM05D006242 ORTHO05D007936 2.6e-100 369.4 293 62.1
ClCG01G025640 Citrullus lanatus HOM05D006242 ORTHO05D007936 3.8e-99 365.5 291 63.6
AL4G31060 Arabidopsis lyrata HOM05D006242 ORTHO05D007936 1.9e-98 363.2 314 58.9
Cc09_g05740 Coffea canephora HOM05D006242 ORTHO05D007936 2.5e-98 362.8 297 64.0
FAN16G0457 Fragaria x ananassa HOM05D006242 ORTHO05D007936 4.2e-98 362.1 320 60.0
SGA_v2.0_scaffold51G18672 Striga asiatica HOM05D006242 ORTHO05D007936 4.2e-98 362.1 292 62.3
Aa31LG9G16170 Aethionema arabicum HOM05D003281 ORTHO05D004128 3.6e-97 359.0 290 63.8
Zm00001eb233240 Zea mays HOM05D006242 ORTHO05D007936 2.3e-96 356.3 300 59.7
SalBow7G3063 Salvia bowleyana HOM05D006242 ORTHO05D007936 5.1e-96 355.1 295 60.7
Sed0024740 Sechium edule HOM05D006242 ORTHO05D007936 5.1e-96 355.1 294 60.2
MELO3C007020.2 Cucumis melo HOM05D006242 ORTHO05D007936 4.3e-95 352.1 326 56.7
Migut.K01175 Erythranthe guttata HOM05D006242 ORTHO05D007936 4.3e-95 352.1 292 60.6
Peaxi162Scf00198g01026 Petunia axillaris HOM05D006242 ORTHO05D007936 5.7e-95 351.7 293 61.1
Cc09_g05610 Coffea canephora HOM05D006242 ORTHO05D007936 1.3e-94 350.5 275 65.1
Glyma.02G163900 Glycine max HOM05D006242 ORTHO05D007936 1.3e-94 350.5 291 60.8
Sc17g0004220 Simmondsia chinensis HOM05D006242 ORTHO05D007936 1.3e-94 350.5 257 66.9
CDE05G0364 Ceratophyllum demersum HOM05D006242 ORTHO05D007936 1.1e-93 347.4 294 59.2
THA.LOC104798560 Tarenaya hassleriana HOM05D006242 ORTHO05D007936 1.5e-92 343.6 360 51.7
Ciclev10016161m.g Citrus clementina HOM05D006242 ORTHO05D007936 5.0e-91 338.6 292 60.6
Sp2g07040 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.1e-89 333.2 277 61.7
TPR.G10622 Trifolium pratense HOM05D006242 ORTHO05D007936 2.1e-89 333.2 289 57.4
Psat6g094920 Pisum sativum HOM05D006242 ORTHO05D007936 2.3e-88 329.7 264 62.1
Nitab4.5_0000138g0120 Nicotiana tabacum HOM05D006242 ORTHO05D007936 5.1e-88 328.6 297 59.6
CSS0025117 Camellia sinensis var. sinensis HOM05D006242 ORTHO05D007936 2.2e-86 323.2 239 68.2
SpUn0157_0010 Schrenkiella parvula HOM05D006242 ORTHO05D007936 2.2e-86 323.2 272 60.7
SEGI_06259 Sequoiadendron giganteum HOM05D006242 ORTHO05D007936 3.7e-86 322.4 299 54.8
BcaC02g11584 Brassica carinata HOM05D006242 ORTHO05D007936 1.4e-85 320.5 291 58.4
Hma1.2p1_1700F.1_g298210 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 5.0e-83 312.0 309 54.7
COL.COLO4_17635 Corchorus olitorius HOM05D006242 ORTHO05D007936 1.9e-82 310.1 230 68.3
Hma1.2p1_1499F.1_g287260 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 8.0e-81 304.7 199 71.9
arahy.Tifrunner.gnm1.ann1.PA3R73 Arachis hypogaea HOM05D006242 ORTHO05D007936 3.0e-80 302.8 283 57.6
Lsat_1_v5_gn_6_96480 Lactuca sativa HOM05D006242 ORTHO05D007936 3.0e-80 302.8 233 67.0
HanXRQChr12g0369481 Helianthus annuus HOM05D006242 ORTHO05D007936 4.0e-80 302.4 242 65.3
Sopen02g010240 Solanum pennellii HOM05D006242 ORTHO05D007936 4.1e-77 292.4 200 71.0
Lj6g0012918 Lotus japonicus HOM05D006242 ORTHO05D007936 4.5e-76 288.9 200 70.5
Cc09_g05660 Coffea canephora HOM05D006242 ORTHO05D007936 5.9e-76 288.5 219 66.7
CiPaw.09G074600 Carya illinoinensis HOM05D006242 ORTHO05D007936 7.7e-76 288.1 210 69.0
arahy.Tifrunner.gnm1.ann1.VZGM4G Arachis hypogaea HOM05D006242 ORTHO05D007936 1.8e-72 276.9 257 56.0
Phvul.007G242500 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 8.3e-70 268.1 182 71.4
Mapoly0026s0041 Marchantia polymorpha HOM05D006242 ORTHO05D007936 1.8e-69 266.9 294 47.6
SMO203G0088 Selaginella moellendorffii HOM05D006242 ORTHO05D007936 4.1e-69 265.8 292 46.6
Pp3c12_18460 Physcomitrium patens HOM05D006242 ORTHO05D007936 2.2e-67 260.0 303 43.2
AagrBONN_evm.TU.Sc2ySwM_228.1028 Anthoceros agrestis HOM05D006242 ORTHO05D007936 1.1e-66 257.7 293 44.4
AT2G35035 Arabidopsis thaliana HOM05D006242 ORTHO05D007936 1.2e-65 254.2 285 49.5
CARHR129200 Cardamine hirsuta HOM05D006242 ORTHO05D007936 1.8e-64 250.4 201 61.2
Nn7g38280 Nelumbo nucifera HOM05D006242 ORTHO05D007936 3.7e-62 242.7 293 49.1
Glyma.20G074000 Glycine max HOM05D006242 ORTHO05D007936 2.0e-60 236.9 208 58.7
TAR624G0344 Trochodendron aralioides HOM05D006242 ORTHO05D007936 9.5e-58 228.0 185 62.7
VMungo0720G1734 Vigna mungo HOM05D006242 ORTHO05D007936 5.7e-55 218.8 185 60.5
Cc09_g05680 Coffea canephora HOM05D006242 ORTHO05D007936 4.9e-54 215.7 189 60.3
AUR62040160 Chenopodium quinoa HOM05D006242 ORTHO05D007936 7.8e-52 208.4 171 60.8
CBR_g46754 Chara braunii HOM05D006242 ORTHO05D007936 3.9e-51 206.1 221 47.1
ATR1094G001 Amborella trichopoda HOM05D006242 ORTHO05D007936 6.6e-51 205.3 212 50.5
HPP92_011011 Vanilla planifolia HOM05D006242 ORTHO05D007936 2.2e-38 163.7 139 60.4
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.4e-38 162.2 331 32.6
unitig_37.g12020 Utricularia gibba HOM05D006242 ORTHO05D007936 1.1e-37 161.4 124 62.9
GSVIVG01006138001 Vitis vinifera HOM05D006242 ORTHO05D007936 1.6e-33 147.5 94 76.6
Hma1.2p1_1700F.1_g298200 Hydrangea macrophylla HOM05D006242 ORTHO05D007936 1.2e-31 141.4 96 69.8
BraA05t20007Z Brassica rapa HOM05D003281 ORTHO05D004128 1.3e-30 137.9 134 55.2
Hund15670 Selenicereus undatus HOM05D006242 ORTHO05D007936 2.7e-28 130.2 94 66.0
Aqoxy1G01391 Aquilegia oxysepala HOM05D006242 ORTHO05D007936 4.6e-28 129.4 94 69.1
SGA_v2.0_scaffold4G02502 Striga asiatica HOM05D006242 ORTHO05D007936 4.6e-28 129.4 93 69.9
Cc09_g05630 Coffea canephora HOM05D006242 ORTHO05D007936 5.6e-26 122.5 152 48.7
HPP92_011012 Vanilla planifolia HOM05D006242 ORTHO05D007936 7.6e-23 112.1 123 47.2
AUR62037908 Chenopodium quinoa HOM05D006242 ORTHO05D007936 9.9e-23 111.7 106 52.8
Phvul.007G242466 Phaseolus vulgaris HOM05D006242 ORTHO05D007936 4.9e-22 109.4 107 50.5
BcaB02g09486 Brassica carinata HOM05D006242 ORTHO05D007936 5.4e-21 105.9 101 55.4
MCO04G402 Micromonas commoda HOM05D006242 ORTHO05D007936 1.2e-20 104.8 177 32.8
TPR.G22035 Trifolium pratense HOM05D006242 ORTHO05D007936 6.0e-20 102.4 76 65.8
ATR1094G019 Amborella trichopoda HOM05D006242 ORTHO05D007936 8.7e-19 98.6 80 58.8
Cc09_g05720 Coffea canephora HOM05D006242 ORTHO05D007936 1.1e-18 98.2 67 68.7
Cc09_g05640 Coffea canephora HOM05D006242 ORTHO05D007936 7.3e-18 95.5 68 64.7
Cfa025972 Carpinus fangiana HOM05D006242 ORTHO05D007936 6.2e-17 92.4 234 29.1
VMungo0720G2601 Vigna mungo HOM05D006242 ORTHO05D007936 8.1e-17 92.0 96 47.9
SHI14613 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-14 84.7 54 70.4
AUR62040161 Chenopodium quinoa HOM05D006242 ORTHO05D007936 4.9e-14 82.8 91 46.2
Os02g0173000 Oryza sativa ssp. japonica HOM05D006242 ORTHO05D007936 1.8e-11 74.3 108 41.7
Cc09_g05710 Coffea canephora HOM05D006242 ORTHO05D007936 1.5e-10 71.2 57 59.6
Hund15669 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.6e-10 69.3 56 57.1
CiPaw.09G216300 Carya illinoinensis HOM05D006242 ORTHO05D007936 1.6e-09 67.8 71 53.5


User provided reference genes

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