Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2409 Punica granatum HOM05D007895 ORTHO05D010017 0.0e+00 1327.0 632 100.0
Thecc.06G218400 Theobroma cacao HOM05D007895 ORTHO05D010017 9.5e-310 1066.2 634 77.9
Duzib235G1140 Durio zibethinus HOM05D007895 ORTHO05D010017 6.2e-309 1063.5 634 78.1
Potri.011G001800 Populus trichocarpa HOM05D007895 ORTHO05D010017 1.8e-308 1062.0 634 78.4
Prupe.4G023000 Prunus persica HOM05D007895 ORTHO05D010017 8.3e-306 1053.1 634 77.3
Cfa000239 Carpinus fangiana HOM05D007895 ORTHO05D010017 7.1e-305 1050.0 633 77.1
TAR627G0668 Trochodendron aralioides HOM05D007895 ORTHO05D010017 2.7e-304 1048.1 634 77.4
Gohir.D05G172500 Gossypium hirsutum HOM05D007895 ORTHO05D010017 1.5e-302 1042.3 634 76.7
Sabra11G0000700 Salix brachista HOM05D007895 ORTHO05D010017 1.5e-302 1042.3 634 77.4
Gohir.A05G169300 Gossypium hirsutum HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 634 76.5
Gorai.009G177700 Gossypium raimondii HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 634 76.5
MD10G1319500 Malus domestica HOM05D007895 ORTHO05D010017 4.3e-302 1040.8 634 76.2
Dinv13880 Davidia involucrata HOM05D007895 ORTHO05D010017 5.6e-302 1040.4 609 78.8
QL05p073549 Quercus lobata HOM05D007895 ORTHO05D010017 2.1e-301 1038.5 633 76.3
QL05p073789 Quercus lobata HOM05D007895 ORTHO05D010017 2.1e-301 1038.5 633 76.3
MD05G1343800 Malus domestica HOM05D007895 ORTHO05D010017 4.7e-301 1037.3 634 76.5
Hma1.2p1_0057F.1_g031900 Hydrangea macrophylla HOM05D007895 ORTHO05D010017 5.2e-300 1033.9 636 75.9
Glyma.13G205700 Glycine max HOM05D007895 ORTHO05D010017 3.4e-299 1031.2 634 75.9
Glyma.15G106800 Glycine max HOM05D007895 ORTHO05D010017 9.9e-299 1029.6 634 75.6
FvH4_3g02321 Fragaria vesca HOM05D007895 ORTHO05D010017 1.1e-297 1026.2 636 75.2
TWI63G1238 Tripterygium wilfordii HOM05D007895 ORTHO05D010017 1.9e-297 1025.4 634 75.6
VMungo0540G0331 Vigna mungo HOM05D007895 ORTHO05D010017 2.4e-297 1025.0 634 75.9
RcHm_v2.0_Chr5g0003541 Rosa chinensis HOM05D007895 ORTHO05D010017 3.9e-295 1017.7 636 75.2
Manes.17G037900 Manihot esculenta HOM05D007895 ORTHO05D010017 1.1e-294 1016.1 634 75.2
Phvul.006G150500 Phaseolus vulgaris HOM05D007895 ORTHO05D010017 1.9e-294 1015.4 634 75.1
Medtr2g022910 Medicago truncatula HOM05D007895 ORTHO05D010017 4.4e-291 1004.2 634 73.7
TPR.G7647 Trifolium pratense HOM05D007895 ORTHO05D010017 1.1e-289 999.6 634 73.5
COL.COLO4_31754 Corchorus olitorius HOM05D007895 ORTHO05D010017 5.4e-289 997.3 593 77.7
Lalb_Chr18g0056281 Lupinus albus HOM05D007895 ORTHO05D010017 3.9e-287 991.1 634 73.7
Rhsim13G0155200 Rhododendron simsii HOM05D007895 ORTHO05D010017 3.9e-287 991.1 634 73.0
Psat1g181720 Pisum sativum HOM05D007895 ORTHO05D010017 2.1e-285 985.3 635 73.1
CSS0036667 Camellia sinensis var. sinensis HOM05D007895 ORTHO05D010017 4.8e-285 984.2 633 73.5
Oeu033195.1 Olea europaea HOM05D007895 ORTHO05D010017 2.0e-283 978.8 642 71.7
EL10Ac8g20029 Beta vulgaris HOM05D007895 ORTHO05D010017 4.9e-282 974.2 634 71.6
Nitab4.5_0003254g0060 Nicotiana tabacum HOM05D007895 ORTHO05D010017 6.4e-282 973.8 634 71.5
Ciclev10017921m.g Citrus clementina HOM05D007895 ORTHO05D010017 1.2e-280 969.5 634 73.5
CAN.G569.16 Capsicum annuum HOM05D007895 ORTHO05D010017 2.1e-280 968.8 634 70.8
Nitab4.5_0007482g0010 Nicotiana tabacum HOM05D007895 ORTHO05D010017 1.1e-278 963.0 634 70.0
MBI18_g12452_MAGBIO Magnolia biondii HOM05D007895 ORTHO05D010017 1.4e-276 956.1 636 72.2
Lj6g0014344 Lotus japonicus HOM05D007895 ORTHO05D010017 3.4e-275 951.4 604 74.3
Cc09_g01830 Coffea canephora HOM05D007895 ORTHO05D010017 1.1e-265 919.8 633 68.7
DCAR_004211 Daucus carota HOM05D007895 ORTHO05D010017 1.9e-265 919.1 633 66.0
Ah.09g235010 Amaranthus hybridus HOM05D007895 ORTHO05D010017 2.8e-261 905.2 623 67.4
ATR0752G052 Amborella trichopoda HOM05D007895 ORTHO05D010017 4.5e-243 844.7 645 62.6
THA.LOC104806298 Tarenaya hassleriana HOM05D007895 ORTHO05D010017 6.5e-242 840.9 637 63.0
Lsat_1_v5_gn_7_17681 Lactuca sativa HOM05D007895 ORTHO05D010017 8.8e-239 830.5 634 62.0
CDE02G0632 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 4.5e-235 818.1 634 62.5
BraA01t01263Z Brassica rapa HOM05D007895 ORTHO05D010017 1.8e-231 806.2 636 60.8
BcaC09g51191 Brassica carinata HOM05D007895 ORTHO05D010017 6.7e-231 804.3 634 60.1
C01p15890 Brassica napus HOM05D007895 ORTHO05D010017 6.7e-231 804.3 634 60.1
BcaNung02255 Brassica carinata HOM05D007895 ORTHO05D010017 1.2e-230 803.5 637 60.1
BolC1t01543H Brassica oleracea HOM05D007895 ORTHO05D010017 1.5e-230 803.1 636 60.2
Aqoxy1G03251 Aquilegia oxysepala HOM05D007895 ORTHO05D010017 1.0e-223 780.4 534 68.9
Carub.0007s1948 Capsella rubella HOM05D007895 ORTHO05D010017 1.0e-223 780.4 648 58.6
Sp7g20040 Schrenkiella parvula HOM05D007895 ORTHO05D010017 7.0e-220 767.7 642 57.5
CDE05G3159 Ceratophyllum demersum HOM05D007895 ORTHO05D010017 3.5e-219 765.4 544 65.6
A01p13190 Brassica napus HOM05D007895 ORTHO05D010017 4.7e-216 755.0 636 58.0
Mapoly0063s0045 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.5e-185 653.7 640 51.4
AagrBONN_evm.TU.Sc2ySwM_117.3222 Anthoceros agrestis HOM05D007895 ORTHO05D010017 5.1e-178 628.6 641 48.8
SMO351G0184 Selaginella moellendorffii HOM05D007895 ORTHO05D010017 3.8e-173 612.5 643 48.7
GSVIVG01002953001 Vitis vinifera HOM05D007895 ORTHO05D010017 1.2e-171 607.4 389 73.3
Mapoly0021s0002 Marchantia polymorpha HOM05D007895 ORTHO05D010017 1.6e-131 474.2 737 37.3
CiPaw.09G090200 Carya illinoinensis HOM05D007895 ORTHO05D010017 6.7e-130 468.8 304 71.7
MSTRG.7225 Avicennia marina HOM05D007895 ORTHO05D010017 4.4e-113 412.9 272 70.2
CANSAT56G1122 Cannabis sativa HOM05D007895 ORTHO05D010017 9.1e-111 405.2 273 68.5
Cpa.g.sc189.18 Carica papaya HOM05D007895 ORTHO05D010017 1.4e-106 391.3 244 74.6
Cc00_g03030 Coffea canephora HOM05D007895 ORTHO05D010017 6.5e-101 372.5 248 67.7
Lalb_Chr15g0087521 Lupinus albus HOM05D007895 ORTHO05D010017 3.3e-100 370.2 224 76.3
AUR62021973 Chenopodium quinoa HOM05D007895 ORTHO05D010017 5.5e-100 369.4 272 62.9
Lalb_Chr15g0087511 Lupinus albus HOM05D007895 ORTHO05D010017 8.0e-99 365.5 240 70.0
AUR62012684 Chenopodium quinoa HOM05D007895 ORTHO05D010017 1.8e-98 364.4 272 62.1
Thhalv10026963m.g Eutrema salsugineum HOM05D007895 ORTHO05D010017 3.0e-98 363.6 257 66.1
AT4G21890 Arabidopsis thaliana HOM05D007895 ORTHO05D010017 5.2e-98 362.8 253 68.0
CARHR228650 Cardamine hirsuta HOM05D007895 ORTHO05D010017 5.7e-97 359.4 257 66.1
Sc05g0009090 Simmondsia chinensis HOM05D007895 ORTHO05D010017 2.2e-88 330.9 253 61.7
Aa31LG6G3880 Aethionema arabicum HOM05D007895 ORTHO05D010017 3.0e-85 320.5 254 57.9
Duzib160G0114 Durio zibethinus HOM05D007895 ORTHO05D010017 1.0e-69 268.9 256 57.0
SalBow8G0130 Salvia bowleyana HOM05D007895 ORTHO05D010017 1.3e-56 225.3 170 61.8
Lalb_Chr15g0087501 Lupinus albus HOM05D007895 ORTHO05D010017 1.8e-50 204.9 130 76.2
Rhsim13G0155300 Rhododendron simsii HOM05D007895 ORTHO05D013379 1.2e-41 175.6 190 54.2
arahy.Tifrunner.gnm1.ann1.2TJ8DU Arachis hypogaea HOM05D001404 ORTHO05D009009 2.7e-38 164.5 381 32.3
SMO091G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.8e-37 161.8 357 31.1
Ciclev10031837m.g Citrus clementina HOM05D001404 ORTHO05D009009 3.0e-37 161.0 372 31.5
Mapoly0056s0134 Marchantia polymorpha HOM05D001404 ORTHO05D009009 3.9e-37 160.6 372 32.0
THA.LOC104822951 Tarenaya hassleriana HOM05D001404 ORTHO05D009009 8.7e-37 159.5 372 32.8
Os07g0481000 Oryza sativa ssp. japonica HOM05D001404 ORTHO05D009009 1.5e-36 158.7 372 31.5
Carub.0002s1684 Capsella rubella HOM05D001404 ORTHO05D009009 2.5e-36 157.9 378 29.6
BraA07t31231Z Brassica rapa HOM05D001404 ORTHO05D009009 3.3e-36 157.5 381 31.0
Potri.010G037600 Populus trichocarpa HOM05D001404 ORTHO05D009009 3.3e-36 157.5 388 31.2
Hund25295 Selenicereus undatus HOM05D001404 ORTHO05D009009 3.3e-36 157.5 367 32.7
A07p36630 Brassica napus HOM05D001404 ORTHO05D009009 4.3e-36 157.1 381 31.0
CANSAT01G0136 Cannabis sativa HOM05D001404 ORTHO05D009009 5.6e-36 156.8 373 31.1
CARHR063240 Cardamine hirsuta HOM05D001404 ORTHO05D002309 7.4e-36 156.4 378 30.4
HanXRQChr17g0570291 Helianthus annuus HOM05D001404 ORTHO05D009009 9.6e-36 156.0 390 31.5
PGR119G0405 Punica granatum HOM05D001404 ORTHO05D009009 9.6e-36 156.0 373 31.6
CiPaw.05G145400 Carya illinoinensis HOM05D001404 ORTHO05D009009 1.3e-35 155.6 376 31.6
Ca_24163_v3 Cicer arietinum L. HOM05D001404 ORTHO05D002309 2.1e-35 154.8 368 31.5
Lj2g0007192 Lotus japonicus HOM05D001404 ORTHO05D009009 2.8e-35 154.5 373 31.9
QL03p067270 Quercus lobata HOM05D001404 ORTHO05D009009 3.7e-35 154.1 377 31.6
AL2G29430 Arabidopsis lyrata HOM05D001404 ORTHO05D009009 1.1e-34 152.5 371 30.5
RcHm_v2.0_Chr4g0444821 Rosa chinensis HOM05D001404 ORTHO05D009009 1.4e-34 152.1 368 31.0
CSS0043132 Camellia sinensis var. sinensis HOM05D001404 ORTHO05D002309 1.8e-34 151.8 372 31.2
Actinidia08188 Actinidia chinensis HOM05D001404 ORTHO05D009009 2.4e-34 151.4 372 33.1
Thhalv10018717m.g Eutrema salsugineum HOM05D001404 ORTHO05D009009 2.4e-34 151.4 373 30.3
Peaxi162Scf00828g00020 Petunia axillaris HOM05D001404 ORTHO05D009009 2.4e-34 151.4 367 32.2
Sp5g25260 Schrenkiella parvula HOM05D001404 ORTHO05D009009 5.3e-34 150.2 373 30.6
Lalb_Chr05g0217271 Lupinus albus HOM05D001404 ORTHO05D009009 6.9e-34 149.8 370 31.1
C06p44030 Brassica napus HOM05D001404 ORTHO05D009009 1.2e-33 149.1 369 30.4
BolC6t39476H Brassica oleracea HOM05D001404 ORTHO05D009009 1.2e-33 149.1 369 30.4
AagrBONN_evm.TU.Sc2ySwM_368.625 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-33 148.7 398 30.2
Pp3c9_21180 Physcomitrium patens HOM05D001404 ORTHO05D009009 1.5e-33 148.7 376 30.9
Manes.01G195300 Manihot esculenta HOM05D001404 ORTHO05D009009 2.0e-33 148.3 368 32.3
Thecc.02G239700 Theobroma cacao HOM05D001404 ORTHO05D009009 2.6e-33 147.9 380 31.1
TAR374G0908 Trochodendron aralioides HOM05D001404 ORTHO05D009009 3.4e-33 147.5 371 31.5
Eucgr.B02570 Eucalyptus grandis HOM05D001404 ORTHO05D009009 4.5e-33 147.1 374 30.5
Medtr5g036470 Medicago truncatula HOM05D001404 ORTHO05D009009 7.6e-33 146.4 367 31.1
FAN12G1952 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.0e-32 146.0 370 29.7
AT1G70150 Arabidopsis thaliana HOM05D001404 ORTHO05D009009 1.3e-32 145.6 373 29.2
Glyma.01G037400 Glycine max HOM05D001404 ORTHO05D009009 1.3e-32 145.6 373 31.4
Sed0021588 Sechium edule HOM05D001404 ORTHO05D009009 1.3e-32 145.6 399 30.3
Sc14g0008480 Simmondsia chinensis HOM05D001355 ORTHO05D003368 1.7e-32 145.2 372 31.2
Oeu028546.1 Olea europaea HOM05D001404 ORTHO05D009009 2.2e-32 144.8 370 31.6
Duzib268G0371 Durio zibethinus HOM05D001404 ORTHO05D009009 2.9e-32 144.4 380 30.5
FvH4_4g35220 Fragaria vesca HOM05D001404 ORTHO05D009009 3.8e-32 144.1 376 29.5
Lsat_1_v5_gn_4_6141 Lactuca sativa HOM05D001404 ORTHO05D009009 3.8e-32 144.1 371 30.7
MD16G1084700 Malus domestica HOM05D001404 ORTHO05D009009 3.8e-32 144.1 377 31.8
Psat2g112600 Pisum sativum HOM05D001404 ORTHO05D009009 4.9e-32 143.7 373 30.8
TWI36G0457 Tripterygium wilfordii HOM05D001404 ORTHO05D009009 4.9e-32 143.7 397 30.0
Aa31LG4G10750 Aethionema arabicum HOM05D001404 ORTHO05D009009 6.5e-32 143.3 385 28.8
HPP92_001781 Vanilla planifolia HOM05D007895 ORTHO05D010017 1.4e-31 142.1 130 57.7
GSVIVG01020147001 Vitis vinifera HOM05D001404 ORTHO05D009009 1.4e-31 142.1 385 29.1
FAN07G0845 Fragaria x ananassa HOM05D001404 ORTHO05D009009 1.9e-31 141.7 371 30.5
Gorai.005G187100 Gossypium raimondii HOM05D001404 ORTHO05D009009 1.9e-31 141.7 381 30.2
VMungo1215G3058 Vigna mungo HOM05D001404 ORTHO05D009009 1.9e-31 141.7 369 30.9
EL10Ac6g13111 Beta vulgaris HOM05D001404 ORTHO05D009009 5.5e-31 140.2 373 30.0
SHI05275 Sapria himalayana HOM05D001404 ORTHO05D009009 7.1e-31 139.8 371 29.9
BcaC08g46464 Brassica carinata HOM05D001404 ORTHO05D009009 9.3e-31 139.4 369 29.0
ClCG05G024960 Citrullus lanatus HOM05D001404 ORTHO05D009009 2.1e-30 138.3 357 31.1
Migut.L01385 Erythranthe guttata HOM05D001404 ORTHO05D009009 4.6e-30 137.1 366 30.1
ECA234G1431 Erigeron canadensis HOM05D001404 ORTHO05D002309 6.0e-30 136.7 377 29.2
Gohir.A03G143500 Gossypium hirsutum HOM05D001404 ORTHO05D009009 6.0e-30 136.7 381 29.4
Prupe.1G261400 Prunus persica HOM05D001404 ORTHO05D009009 1.0e-29 136.0 374 29.7
SMO238G0008 Selaginella moellendorffii HOM05D001404 ORTHO05D009009 1.0e-29 136.0 339 29.2
PGSC0003DMG401022613 Solanum tuberosum HOM05D001404 ORTHO05D009009 2.3e-29 134.8 381 29.1
Sopen05g002340 Solanum pennellii HOM05D001404 ORTHO05D009009 5.1e-29 133.7 382 28.8
vmacro01204 Vaccinium macrocarpon HOM05D001404 ORTHO05D009009 6.7e-29 133.3 392 29.6
FAN22G1682 Fragaria x ananassa HOM05D001404 ORTHO05D009009 8.7e-29 132.9 371 29.9
SalBow2G3155 Salvia bowleyana HOM05D001404 ORTHO05D009009 8.7e-29 132.9 374 30.5
Solyc05g006410.3 Solanum lycopersicum HOM05D001404 ORTHO05D009009 8.7e-29 132.9 378 29.4
Cc11_g14260 Coffea canephora HOM05D001404 ORTHO05D009009 1.9e-28 131.7 373 30.8
SalBow2G3257 Salvia bowleyana HOM05D001404 ORTHO05D009009 2.5e-28 131.3 364 30.5
Aqoxy3G00874 Aquilegia oxysepala HOM05D001404 ORTHO05D009009 4.3e-28 130.6 393 28.2
CDE10G0936 Ceratophyllum demersum HOM05D001404 ORTHO05D009009 4.3e-28 130.6 372 29.8
MSTRG.7858 Avicennia marina HOM05D001404 ORTHO05D009009 7.4e-28 129.8 366 30.1
CAN.G159.8 Capsicum annuum HOM05D001404 ORTHO05D009009 7.4e-28 129.8 376 29.3
COL.COLO4_36283 Corchorus olitorius HOM05D001404 ORTHO05D002309 7.4e-28 129.8 366 30.9
HPP92_002468 Vanilla planifolia HOM05D001404 ORTHO05D009009 1.6e-27 128.6 302 32.1
Zm00001eb321400 Zea mays HOM05D001404 ORTHO05D009009 3.7e-27 127.5 347 30.8
Haze_12124 Corylus avellana HOM05D001404 ORTHO05D002309 8.2e-27 126.3 312 32.1
Cpa.g.sc1960.1 Carica papaya HOM05D001404 ORTHO05D009009 5.3e-26 123.6 331 29.3
CAN.G328.16 Capsicum annuum HOM05D007895 ORTHO05D010017 9.0e-26 122.9 152 42.8
Gohir.D02G166800 Gossypium hirsutum HOM05D001404 ORTHO05D009009 2.6e-25 121.3 311 30.5
FAN17G2278 Fragaria x ananassa HOM05D001404 ORTHO05D009009 4.5e-25 120.6 251 33.1
Nitab4.5_0003602g0020 Nicotiana tabacum HOM05D001404 ORTHO05D009009 4.5e-25 120.6 415 28.2
PSO161G0115 Papaver somniferum HOM05D001404 ORTHO05D009009 7.7e-25 119.8 371 28.6
SGA_v2.0_scaffold8G04270 Striga asiatica HOM05D001404 ORTHO05D009009 1.3e-24 119.0 379 28.5
arahy.Tifrunner.gnm1.ann1.VUK41S Arachis hypogaea HOM05D001404 ORTHO05D009009 1.7e-24 118.6 249 32.9
Nitab4.5_0002312g0090 Nicotiana tabacum HOM05D001404 ORTHO05D009009 1.7e-24 118.6 317 30.0
TPR.G17319 Trifolium pratense HOM05D001404 ORTHO05D009009 5.0e-24 117.1 330 29.1
Lj6A799T78 Lonicera japonica HOM05D001404 ORTHO05D009009 4.2e-23 114.0 375 29.1
Sabra10G0028400 Salix brachista HOM05D001404 ORTHO05D009009 4.2e-23 114.0 325 29.5
CBR_g72156 Chara braunii HOM05D001404 ORTHO05D009009 5.5e-23 113.6 292 27.7
Nn4g22934 Nelumbo nucifera HOM05D001404 ORTHO05D009009 6.1e-22 110.2 364 28.6
CsaV3_5G031930 Cucumis sativus L. HOM05D001404 ORTHO05D009009 3.1e-18 97.8 300 28.3
Rhsim12G0051800 Rhododendron simsii HOM05D001404 ORTHO05D009009 9.1e-18 96.3 224 32.6
Glyma.02G027500 Glycine max HOM05D001404 ORTHO05D009009 1.5e-17 95.5 254 30.3
Phvul.002G076800 Phaseolus vulgaris HOM05D001404 ORTHO05D009009 1.3e-16 92.4 232 33.6
unitig_749.g13260 Utricularia gibba HOM05D001404 ORTHO05D009009 1.3e-16 92.4 368 24.7
Dinv24916 Davidia involucrata HOM05D001404 ORTHO05D009009 8.5e-16 89.7 224 30.8
AUR62026309 Chenopodium quinoa HOM05D001404 ORTHO05D009009 1.4e-15 89.0 241 30.7
MCO10G058 Micromonas commoda HOM05D001404 ORTHO05D009009 3.6e-14 84.3 431 24.4
ATR0712G045 Amborella trichopoda HOM05D001404 ORTHO05D009009 8.8e-13 79.7 216 27.3
AagrBONN_evm.TU.Sc2ySwM_117.3431 Anthoceros agrestis HOM05D001404 ORTHO05D009009 1.5e-12 79.0 160 35.6
Atru.chr11.1937 Acer truncatum HOM05D001404 ORTHO05D002309 1.7e-08 65.5 96 40.6
SalBow2G0480 Salvia bowleyana HOM05D001404 ORTHO05D009009 6.5e-08 63.5 300 25.3


User provided reference genes

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