Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2401 Punica granatum HOM05D007989 ORTHO05D010087 1.2e-74 283.1 146 100.0
Manes.13G097300 Manihot esculenta HOM05D007989 ORTHO05D010087 2.8e-23 112.5 163 43.6
TWI53G0073 Tripterygium wilfordii HOM05D007989 ORTHO05D010087 1.4e-22 110.2 155 41.9
Thecc.01G095100 Theobroma cacao HOM05D007989 ORTHO05D010087 3.4e-21 105.5 171 38.6
Nn1g05466 Nelumbo nucifera HOM05D007989 ORTHO05D010087 7.7e-21 104.4 178 36.0
QL06p047951 Quercus lobata HOM05D007989 ORTHO05D010087 1.3e-20 103.6 174 37.4
Cfa002588 Carpinus fangiana HOM05D007989 ORTHO05D010087 1.7e-20 103.2 159 39.0
COL.COLO4_27300 Corchorus olitorius HOM05D007989 ORTHO05D010087 2.2e-20 102.8 171 38.0
Gohir.D03G040900 Gossypium hirsutum HOM05D007989 ORTHO05D010087 3.8e-20 102.1 169 37.9
Haze_24825 Corylus avellana HOM05D007989 ORTHO05D010087 6.5e-20 101.3 162 38.9
Haze_24830 Corylus avellana HOM05D007989 ORTHO05D010087 6.5e-20 101.3 162 38.9
Gohir.A02G130000 Gossypium hirsutum HOM05D007989 ORTHO05D010087 8.5e-20 100.9 169 37.9
Gorai.003G041700 Gossypium raimondii HOM05D007989 ORTHO05D010087 8.5e-20 100.9 169 37.9
FAN23G0861 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.1e-19 100.5 162 42.0
FvH4_1g20210 Fragaria vesca HOM05D007989 ORTHO05D010087 2.5e-19 99.4 162 40.7
Prupe.6G193900 Prunus persica HOM05D007989 ORTHO05D010087 2.5e-19 99.4 179 36.3
FAN19G2348 Fragaria x ananassa HOM05D007989 ORTHO05D010087 3.2e-19 99.0 162 40.7
Duzib147G0239 Durio zibethinus HOM05D007989 ORTHO05D010087 4.2e-19 98.6 172 36.0
MD15G1317900 Malus domestica HOM05D007989 ORTHO05D010087 1.2e-18 97.1 169 39.6
Dinv08871 Davidia involucrata HOM05D007989 ORTHO05D010087 1.6e-18 96.7 164 37.2
FAN26G0087 Fragaria x ananassa HOM05D007989 ORTHO05D010087 1.6e-18 96.7 162 40.1
Phvul.001G254200 Phaseolus vulgaris HOM05D007989 ORTHO05D010087 2.1e-18 96.3 161 42.2
RcHm_v2.0_Chr2g0112271 Rosa chinensis HOM05D007989 ORTHO05D010087 2.1e-18 96.3 158 38.6
MD01G1036700 Malus domestica HOM05D007989 ORTHO05D010087 2.7e-18 95.9 171 36.8
Nitab4.5_0005930g0030 Nicotiana tabacum HOM05D007989 ORTHO05D010087 2.7e-18 95.9 166 38.0
PSO541G3922 Papaver somniferum HOM05D007989 ORTHO05D010087 6.1e-18 94.7 178 36.0
CiPaw.04G104100 Carya illinoinensis HOM05D007989 ORTHO05D010087 8.0e-18 94.4 179 35.2
Sabra05G0058400 Salix brachista HOM05D007989 ORTHO05D010087 2.3e-17 92.8 178 36.5
FAN28G0040 Fragaria x ananassa HOM05D007989 ORTHO05D010087 3.9e-17 92.0 152 40.8
Aqoxy6G00707 Aquilegia oxysepala HOM05D007989 ORTHO05D010087 5.2e-17 91.7 176 34.1
Potri.005G071400 Populus trichocarpa HOM05D007989 ORTHO05D010087 5.2e-17 91.7 177 37.3
PGSC0003DMG401016146 Solanum tuberosum HOM05D007989 ORTHO05D010087 6.7e-17 91.3 166 36.1
MBI06_g03317_MAGBIO Magnolia biondii HOM05D007989 ORTHO05D010087 8.8e-17 90.9 167 35.3
Atru.chr3.1338 Acer truncatum HOM05D007989 ORTHO05D010087 1.5e-16 90.1 162 35.8
TAR628G0250 Trochodendron aralioides HOM05D007989 ORTHO05D010087 1.5e-16 90.1 153 39.2
CANSAT01G0464 Cannabis sativa HOM05D007989 ORTHO05D010087 2.0e-16 89.7 164 36.6
CiPaw.03G146300 Carya illinoinensis HOM05D007989 ORTHO05D010087 2.0e-16 89.7 178 35.4
EL10Ac6g14814 Beta vulgaris HOM05D007989 ORTHO05D010087 2.6e-16 89.4 165 37.0
Sopen11g005100 Solanum pennellii HOM05D007989 ORTHO05D010087 4.4e-16 88.6 167 35.3
CAN.G905.6 Capsicum annuum HOM05D007989 ORTHO05D010087 5.7e-16 88.2 163 36.2
PSO675G2967 Papaver somniferum HOM05D007989 ORTHO05D010087 5.7e-16 88.2 181 32.6
TPR.G30536 Trifolium pratense HOM05D007989 ORTHO05D010087 5.7e-16 88.2 171 38.6
Ciclev10026467m.g Citrus clementina HOM05D007989 ORTHO05D010087 7.4e-16 87.8 161 34.2
Potri.007G097400 Populus trichocarpa HOM05D007989 ORTHO05D010087 7.4e-16 87.8 177 36.7
Migut.H02322 Erythranthe guttata HOM05D007989 ORTHO05D010087 9.7e-16 87.4 155 39.4
AUR62027199 Chenopodium quinoa HOM05D007989 ORTHO05D010087 2.8e-15 85.9 153 35.9
Solyc11g010320.1 Solanum lycopersicum HOM05D007989 ORTHO05D010087 3.7e-15 85.5 160 35.0
Glyma.18G014700 Glycine max HOM05D007989 ORTHO05D010087 6.3e-15 84.7 158 39.9
Nitab4.5_0000241g0120 Nicotiana tabacum HOM05D007989 ORTHO05D010087 1.1e-14 84.0 167 34.7
Cpa.g.sc55.66 Carica papaya HOM05D007989 ORTHO05D010087 1.4e-14 83.6 175 34.3
VMungo1383G0535 Vigna mungo HOM05D007989 ORTHO05D010087 1.8e-14 83.2 169 38.5
Medtr3g086760 Medicago truncatula HOM05D007989 ORTHO05D010087 2.4e-14 82.8 180 36.1
Rhsim10G0168900 Rhododendron simsii HOM05D007989 ORTHO05D010087 2.4e-14 82.8 126 42.1
Lj6g0026253 Lotus japonicus HOM05D007989 ORTHO05D010087 3.1e-14 82.4 161 40.4
Psat1g083960 Pisum sativum HOM05D007989 ORTHO05D010087 1.6e-13 80.1 160 38.1
Ca_30637_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 2.0e-13 79.7 164 37.8
Sabra07G0080700 Salix brachista HOM05D007989 ORTHO05D010087 2.6e-13 79.3 176 33.0
vmacro12990 Vaccinium macrocarpon HOM05D007989 ORTHO05D010087 5.9e-13 78.2 143 37.1
Zm00001eb033460 Zea mays HOM05D007989 ORTHO05D010087 7.7e-13 77.8 133 36.1
Hma1.2p1_0019F.1_g013880 Hydrangea macrophylla HOM05D007989 ORTHO05D010087 2.9e-12 75.9 119 40.3
arahy.Tifrunner.gnm1.ann1.92LXSJ Arachis hypogaea HOM05D007989 ORTHO05D010087 1.9e-11 73.2 179 34.6
Glyma.11G242400 Glycine max HOM05D007989 ORTHO05D010087 2.5e-11 72.8 158 36.7
CsaV3_4G009020 Cucumis sativus L. HOM05D007989 ORTHO05D010087 5.5e-11 71.6 139 36.0
HPP92_002319 Vanilla planifolia HOM05D007989 ORTHO05D010087 1.2e-10 70.5 134 35.8
MELO3C018999.2 Cucumis melo HOM05D007989 ORTHO05D010087 2.1e-10 69.7 141 34.8
Actinidia06535 Actinidia chinensis HOM05D007989 ORTHO05D010087 2.7e-10 69.3 135 36.3
arahy.Tifrunner.gnm1.ann1.FU6RJX Arachis hypogaea HOM05D007989 ORTHO05D010087 2.7e-10 69.3 122 40.2
Oeu002158.1 Olea europaea HOM05D007989 ORTHO05D010087 1.0e-09 67.4 117 39.3
Carub.0001s0097 Capsella rubella HOM05D002476 ORTHO05D002652 4.0e-09 65.5 183 26.8
Ca_16505_v3 Cicer arietinum L. HOM05D007989 ORTHO05D010087 5.2e-09 65.1 130 39.2
ClCG10G008400 Citrullus lanatus HOM05D007989 ORTHO05D010087 5.2e-09 65.1 91 46.2
Aa31LG1G10610 Aethionema arabicum HOM05D002476 ORTHO05D002652 1.5e-08 63.5 162 26.5
Lalb_Chr08g0230941 Lupinus albus HOM05D007989 ORTHO05D010087 3.3e-08 62.4 112 39.3
AT1G01240 Arabidopsis thaliana HOM05D002476 ORTHO05D002652 9.7e-08 60.8 183 25.1
Sc16g0000320 Simmondsia chinensis HOM05D007989 ORTHO05D010087 2.8e-07 59.3 119 37.8
AL1G11220 Arabidopsis lyrata HOM05D002476 ORTHO05D002652 4.8e-07 58.5 183 24.6
BraA09t42240Z Brassica rapa HOM05D002476 ORTHO05D002652 6.3e-07 58.2 185 25.9
CARHR001220 Cardamine hirsuta HOM05D002476 ORTHO05D002652 6.3e-07 58.2 182 25.8
BolC8t52874H Brassica oleracea HOM05D002476 ORTHO05D002652 2.4e-06 56.2 186 25.8
Os08g0483100 Oryza sativa ssp. japonica HOM05D007989 ORTHO05D010087 2.4e-06 56.2 159 28.9
Sp1g01040 Schrenkiella parvula HOM05D002476 ORTHO05D002652 2.4e-06 56.2 187 23.5
BraA10t42344Z Brassica rapa HOM05D002476 ORTHO05D002652 5.3e-06 55.1 180 25.0
Aa31LG1G27930 Aethionema arabicum HOM05D002476 ORTHO05D002652 7.0e-06 54.7 165 27.3


User provided reference genes

Program Settings