Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 7.3e-75 283.9 150 100.0
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 1.9e-43 179.5 147 64.6
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 7.3e-43 177.6 138 68.1
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 7.3e-43 177.6 146 65.1
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.3e-42 176.8 148 63.5
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 1.6e-42 176.4 146 65.1
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 1.2e-40 170.2 146 62.3
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 1.2e-40 170.2 146 62.3
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 2.0e-40 169.5 146 61.6
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 4.5e-40 168.3 143 65.7
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 1.3e-39 166.8 144 61.1
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 1.3e-39 166.8 146 63.0
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 3.8e-39 165.2 137 67.2
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 2.4e-38 162.5 150 62.7
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 5.4e-38 161.4 148 64.2
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 9.3e-38 160.6 146 64.4
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.6e-37 159.8 138 65.2
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.1e-37 159.5 138 59.4
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 2.1e-37 159.5 139 65.5
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 4.6e-37 158.3 139 62.6
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 1.0e-36 157.1 138 60.1
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 1.8e-36 156.4 146 63.0
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.3e-36 156.0 137 62.8
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.3e-36 156.0 137 62.8
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 3.0e-36 155.6 137 62.8
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 8.7e-36 154.1 172 52.9
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 8.7e-36 154.1 139 61.9
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 8.7e-36 154.1 136 64.0
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 8.7e-36 154.1 139 61.2
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 1.1e-35 153.7 172 53.5
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 1.5e-35 153.3 137 62.0
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 1.5e-35 153.3 137 62.8
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 1.9e-35 152.9 138 60.1
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.9e-35 152.9 145 61.4
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.9e-35 152.9 144 59.0
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 2.5e-35 152.5 138 58.0
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.5e-35 152.5 137 59.9
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 5.6e-35 151.4 136 63.2
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 2.1e-34 149.4 146 60.3
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.1e-34 149.4 144 59.7
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 3.7e-34 148.7 133 62.4
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.7e-34 148.7 136 62.5
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 1.4e-33 146.7 139 57.6
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 4.0e-33 145.2 146 56.2
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 6.9e-33 144.4 136 59.6
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 6.9e-33 144.4 161 53.4
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 9.0e-33 144.1 139 58.3
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 1.2e-32 143.7 137 59.1
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 2.0e-32 142.9 140 60.7
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 4.5e-32 141.7 135 57.8
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 5.8e-32 141.4 145 60.0
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 9.9e-32 140.6 135 60.7
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 9.9e-32 140.6 138 58.7
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 1.3e-31 140.2 137 56.2
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 1.3e-31 140.2 138 57.2
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 2.2e-31 139.4 137 59.1
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 4.9e-31 138.3 135 60.7
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 6.4e-31 137.9 145 53.8
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 1.9e-30 136.3 138 58.7
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 5.5e-30 134.8 135 58.5
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 7.1e-30 134.4 137 57.7
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 1.2e-29 133.7 148 52.0
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 1.2e-29 133.7 146 53.4
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 1.6e-29 133.3 137 57.7
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 2.7e-29 132.5 135 52.6
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 6.0e-29 131.3 139 57.6
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 6.0e-29 131.3 142 55.6
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.0e-29 131.3 137 51.8
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 7.9e-29 131.0 139 53.2
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.3e-28 130.2 115 55.7
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 1.3e-28 130.2 123 56.1
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 3.0e-28 129.0 144 51.4
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 3.0e-28 129.0 145 55.2
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 6.7e-28 127.9 136 51.5
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 8.7e-28 127.5 90 76.7
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 3.3e-27 125.6 92 75.0
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 3.3e-27 125.6 105 67.6
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 3.3e-27 125.6 137 51.1
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 4.3e-27 125.2 139 53.2
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 7.4e-27 124.4 97 69.1
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 9.6e-27 124.0 125 58.4
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 1.3e-26 123.6 130 57.7
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.3e-26 123.6 123 55.3
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 1.3e-26 123.6 154 52.6
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.7e-26 122.1 122 54.1
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 3.7e-26 122.1 95 71.6
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 3.7e-26 122.1 90 72.2
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.1e-25 120.6 141 47.5
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 2.0e-24 116.3 113 59.3
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 2.0e-24 116.3 114 56.1
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.6e-24 115.9 134 53.0
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 2.6e-24 115.9 133 53.4
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 2.6e-24 115.9 133 53.4
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 3.4e-24 115.5 133 53.4
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 2.9e-23 112.5 133 52.6
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.9e-23 112.5 77 77.9
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 1.9e-22 109.8 133 51.9
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 2.5e-22 109.4 123 51.2
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 7.1e-22 107.8 115 54.8
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 3.5e-21 105.5 93 60.2
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 4.6e-21 105.1 96 60.4
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 6.0e-21 104.8 121 52.1
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 7.9e-21 104.4 77 74.0
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 7.9e-21 104.4 156 42.9
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 3.9e-20 102.1 169 40.2
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 6.7e-20 101.3 90 62.2
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 1.9e-19 99.8 132 51.5
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 1.6e-18 96.7 125 47.2
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 3.7e-18 95.5 110 58.2
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 8.2e-18 94.4 74 70.3
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 1.1e-17 94.0 141 43.3
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 1.8e-17 93.2 91 62.6
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 4.1e-17 92.0 129 45.0
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 9.0e-17 90.9 91 61.5
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 3.4e-16 89.0 124 49.2
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 4.5e-16 88.6 142 41.5
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 7.2e-14 81.3 78 50.0
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 9.3e-14 80.9 97 52.6
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.6e-13 80.1 87 54.0
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 1.4e-12 77.0 139 37.4
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 9.7e-11 70.9 142 33.1
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-10 70.5 89 50.6
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 1.3e-10 70.5 146 35.6
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 2.8e-10 69.3 83 51.8
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 1.1e-09 67.4 80 55.0
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.8e-09 66.6 144 33.3
C08p52130 Brassica napus HOM05D000117 ORTHO05D001036 2.4e-09 66.2 80 51.2
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 5.3e-09 65.1 133 33.1
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 4.5e-08 62.0 139 34.5
Peaxi162Scf00528g00417 Petunia axillaris HOM05D002103 ORTHO05D004020 5.9e-08 61.6 147 32.0
Pp3c12_23290 Physcomitrium patens HOM05D002103 ORTHO05D004020 5.9e-08 61.6 141 29.8
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 7.7e-08 61.2 133 33.8
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 1.0e-07 60.8 152 32.2
GSVIVG01009523001 Vitis vinifera HOM05D002103 ORTHO05D004020 3.8e-07 58.9 132 31.8
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 1.4e-06 57.0 143 30.1
Nn5g30229 Nelumbo nucifera HOM05D002103 ORTHO05D004020 1.4e-06 57.0 145 30.3
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 1.4e-06 57.0 144 33.3
SGA_v2.0_scaffold14G07034 Striga asiatica HOM05D002103 ORTHO05D004020 1.4e-06 57.0 137 27.7
BolC8t46926H Brassica oleracea HOM05D006603 ORTHO05D007786 1.9e-06 56.6 100 42.0
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 1.9e-06 56.6 146 29.5
MD15G1084700 Malus domestica HOM05D002103 ORTHO05D004020 3.2e-06 55.8 130 30.8
Manes.18G032500 Manihot esculenta HOM05D002103 ORTHO05D004020 4.2e-06 55.5 145 26.9
TAR381G0883 Trochodendron aralioides HOM05D002103 ORTHO05D004020 5.5e-06 55.1 132 29.5


User provided reference genes

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