Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2302 Punica granatum HOM05D004817 ORTHO05D005790 1.1e-40 169.5 81 100.0
TPR.G12580 Trifolium pratense HOM05D004817 ORTHO05D005790 2.9e-25 118.2 80 70.0
Psat1g016600 Pisum sativum HOM05D004817 ORTHO05D005790 4.9e-25 117.5 80 73.8
Phvul.003G124400 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.1e-24 116.3 80 73.8
Phvul.009G221600 Phaseolus vulgaris HOM05D004817 ORTHO05D005790 1.1e-24 116.3 80 72.5
Glyma.09G077700 Glycine max HOM05D004817 ORTHO05D005790 2.4e-24 115.2 80 70.0
Glyma.15G185200 Glycine max HOM05D004817 ORTHO05D005790 5.4e-24 114.0 80 70.0
Medtr2g044940 Medicago truncatula HOM05D004817 ORTHO05D005790 1.6e-23 112.5 80 71.2
Ca_02320_v3 Cicer arietinum L. HOM05D004817 ORTHO05D005790 4.6e-23 110.9 80 68.8
Medtr4g124250 Medicago truncatula HOM05D004817 ORTHO05D005790 4.6e-23 110.9 81 69.1
Lalb_Chr12g0200501 Lupinus albus HOM05D004817 ORTHO05D005790 1.7e-22 109.0 80 68.8
Manes.03G213500 Manihot esculenta HOM05D004817 ORTHO05D005790 3.0e-22 108.2 80 71.2
Glyma.17G042600 Glycine max HOM05D004817 ORTHO05D005790 6.6e-22 107.1 81 70.4
Lj6g0012255 Lotus japonicus HOM05D004817 ORTHO05D005790 6.6e-22 107.1 80 70.0
Glyma.13G117300 Glycine max HOM05D004817 ORTHO05D005790 8.6e-22 106.7 82 69.5
Lalb_Chr08g0232961 Lupinus albus HOM05D004817 ORTHO05D005790 8.6e-22 106.7 79 68.4
TPR.G29237 Trifolium pratense HOM05D004817 ORTHO05D005790 1.1e-21 106.3 80 68.8
QL06p014718 Quercus lobata HOM05D004817 ORTHO05D005790 1.9e-21 105.5 80 67.5
Lalb_Chr23g0276121 Lupinus albus HOM05D004817 ORTHO05D005790 3.3e-21 104.8 79 65.8
Psat4g020640 Pisum sativum HOM05D004817 ORTHO05D005790 7.3e-21 103.6 71 70.4
CiPaw.01G127200 Carya illinoinensis HOM05D004817 ORTHO05D005790 9.5e-21 103.2 81 67.9
Ciclev10007149m.g Citrus clementina HOM05D004817 ORTHO05D005790 1.6e-20 102.4 83 66.3
Sed0022538 Sechium edule HOM05D004817 ORTHO05D005790 1.6e-20 102.4 71 74.6
Lalb_Chr13g0299061 Lupinus albus HOM05D004817 ORTHO05D005790 2.1e-20 102.1 71 71.8
SalBow6G6449 Salvia bowleyana HOM05D004817 ORTHO05D005790 2.1e-20 102.1 81 66.7
CANSAT25G3847 Cannabis sativa HOM05D004817 ORTHO05D005790 3.6e-20 101.3 84 64.3
Lj2g0017510 Lotus japonicus HOM05D004817 ORTHO05D005790 4.7e-20 100.9 79 65.8
COL.COLO4_25048 Corchorus olitorius HOM05D004817 ORTHO05D005790 1.1e-19 99.8 70 72.9
Atru.chr4.3187 Acer truncatum HOM05D004817 ORTHO05D005790 1.4e-19 99.4 81 65.4
Cfa015752 Carpinus fangiana HOM05D004817 ORTHO05D005790 1.4e-19 99.4 81 63.0
Dinv24730 Davidia involucrata HOM05D004817 ORTHO05D005790 1.8e-19 99.0 80 66.2
Duzib151G1168 Durio zibethinus HOM05D004817 ORTHO05D005790 1.8e-19 99.0 73 68.5
PGR031G2777 Punica granatum HOM05D004817 ORTHO05D005790 1.8e-19 99.0 83 66.3
Potri.010G004000 Populus trichocarpa HOM05D004817 ORTHO05D005790 2.3e-19 98.6 82 64.6
Prupe.1G208000 Prunus persica HOM05D004817 ORTHO05D005790 3.1e-19 98.2 80 65.0
Eucgr.H04140 Eucalyptus grandis HOM05D004817 ORTHO05D005790 4.0e-19 97.8 71 67.6
Gohir.A01G036400 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.0e-19 97.8 71 71.8
Gohir.D01G023700 Gossypium hirsutum HOM05D004817 ORTHO05D005790 4.0e-19 97.8 71 71.8
Gorai.002G032200 Gossypium raimondii HOM05D004817 ORTHO05D005790 4.0e-19 97.8 71 71.8
Lalb_Chr07g0181551 Lupinus albus HOM05D004817 ORTHO05D005790 4.0e-19 97.8 80 63.8
Cpa.g.sc146.7 Carica papaya HOM05D004817 ORTHO05D005790 5.2e-19 97.4 89 59.6
ClCG05G006950 Citrullus lanatus HOM05D004817 ORTHO05D005790 5.2e-19 97.4 79 65.8
Migut.J01631 Erythranthe guttata HOM05D004817 ORTHO05D005790 5.2e-19 97.4 73 68.5
Eucgr.B02200 Eucalyptus grandis HOM05D004817 ORTHO05D005790 5.2e-19 97.4 81 65.4
CsaV3_3G015620 Cucumis sativus L. HOM05D004817 ORTHO05D005790 8.9e-19 96.7 80 65.0
MD13G1137200 Malus domestica HOM05D004817 ORTHO05D005790 1.5e-18 95.9 82 65.9
Lj4g0003186 Lotus japonicus HOM05D004817 ORTHO05D005790 2.0e-18 95.5 79 63.3
Sabra10G0003400 Salix brachista HOM05D004817 ORTHO05D005790 2.6e-18 95.1 82 64.6
RcHm_v2.0_Chr4g0427991 Rosa chinensis HOM05D004817 ORTHO05D005790 5.8e-18 94.0 82 64.6
MD16G1133100 Malus domestica HOM05D004817 ORTHO05D005790 7.5e-18 93.6 82 63.4
Sed0023994 Sechium edule HOM05D004817 ORTHO05D005790 9.8e-18 93.2 71 69.0
arahy.Tifrunner.gnm1.ann1.E7NGHZ Arachis hypogaea HOM05D004817 ORTHO05D005790 1.3e-17 92.8 81 65.4
EL10Ac3g06222 Beta vulgaris HOM05D004817 ORTHO05D005790 3.7e-17 91.3 82 61.0
Lalb_Chr11g0073761 Lupinus albus HOM05D004817 ORTHO05D005790 4.9e-17 90.9 80 60.0
Hund12264 Selenicereus undatus HOM05D004817 ORTHO05D005790 6.4e-17 90.5 80 62.5
GSVIVG01017708001 Vitis vinifera HOM05D004817 ORTHO05D005790 6.4e-17 90.5 81 63.0
arahy.Tifrunner.gnm1.ann1.XTK2NM Arachis hypogaea HOM05D004817 ORTHO05D005790 1.1e-16 89.7 81 64.2
Solyc05g053180.3 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.1e-16 89.7 74 64.9
Sopen05g031690 Solanum pennellii HOM05D004817 ORTHO05D005790 1.1e-16 89.7 74 64.9
Aqoxy5G02845 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 1.4e-16 89.4 71 66.2
Nn4g25286 Nelumbo nucifera HOM05D004817 ORTHO05D005790 1.4e-16 89.4 79 62.0
CAN.G305.33 Capsicum annuum HOM05D004817 ORTHO05D005790 1.9e-16 89.0 74 64.9
Cc03_g00010 Coffea canephora HOM05D004817 ORTHO05D005790 1.9e-16 89.0 73 65.8
PGSC0003DMG400027147 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.9e-16 89.0 74 64.9
FvH4_4g21760 Fragaria vesca HOM05D004817 ORTHO05D005790 4.1e-16 87.8 82 63.4
FAN07G2633 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.1e-16 87.8 82 63.4
FAN12G2725 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.1e-16 87.8 82 63.4
FAN17G1578 Fragaria x ananassa HOM05D004817 ORTHO05D005790 4.1e-16 87.8 82 63.4
Thecc.04G314800 Theobroma cacao HOM05D004817 ORTHO05D005790 4.1e-16 87.8 81 61.7
Nitab4.5_0000745g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 5.4e-16 87.4 72 66.7
arahy.Tifrunner.gnm1.ann1.WNQ9XL Arachis hypogaea HOM05D004817 ORTHO05D005790 7.0e-16 87.0 84 57.1
TAR362G1300 Trochodendron aralioides HOM05D004817 ORTHO05D005790 7.0e-16 87.0 83 60.2
Nitab4.5_0001769g0110 Nicotiana tabacum HOM05D004817 ORTHO05D005790 9.2e-16 86.7 73 65.8
Oeu022716.1 Olea europaea HOM05D004817 ORTHO05D005790 1.6e-15 85.9 70 64.3
Aqoxy2G02458 Aquilegia oxysepala HOM05D004817 ORTHO05D005790 2.0e-15 85.5 81 55.6
CARHR037950 Cardamine hirsuta HOM05D004817 ORTHO05D005790 2.7e-15 85.1 71 56.3
Thhalv10011909m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 3.5e-15 84.7 71 56.3
Oeu002212.1 Olea europaea HOM05D004817 ORTHO05D005790 3.5e-15 84.7 74 62.2
Haze_00750 Corylus avellana HOM05D004817 ORTHO05D005790 6.0e-15 84.0 60 71.7
arahy.Tifrunner.gnm1.ann1.V5CRDX Arachis hypogaea HOM05D004817 ORTHO05D005790 7.8e-15 83.6 86 54.7
BcaC07g37143 Brassica carinata HOM05D004817 ORTHO05D005790 7.8e-15 83.6 71 54.9
A08p04790 Brassica napus HOM05D004817 ORTHO05D005790 7.8e-15 83.6 71 54.9
C08p05160 Brassica napus HOM05D004817 ORTHO05D005790 7.8e-15 83.6 71 54.9
BraA08t32509Z Brassica rapa HOM05D004817 ORTHO05D005790 7.8e-15 83.6 71 54.9
AL1G54940 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
BcaB07g33764 Brassica carinata HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
A05p21090 Brassica napus HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
BolC5t32277H Brassica oleracea HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
BraA05t21012Z Brassica rapa HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
Carub.0001s3746 Capsella rubella HOM05D004817 ORTHO05D005790 1.0e-14 83.2 74 56.8
Sp1g35290 Schrenkiella parvula HOM05D004817 ORTHO05D005790 1.0e-14 83.2 71 54.9
THA.LOC104821815 Tarenaya hassleriana HOM05D004817 ORTHO05D005790 1.3e-14 82.8 80 58.8
BcaB04g17438 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-14 82.4 71 54.9
BcaC08g43030 Brassica carinata HOM05D004817 ORTHO05D005790 1.7e-14 82.4 71 53.5
C06p02830 Brassica napus HOM05D004817 ORTHO05D005790 1.7e-14 82.4 71 53.5
BolC6t35412H Brassica oleracea HOM05D004817 ORTHO05D005790 1.7e-14 82.4 71 53.5
AT1G48330 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 2.3e-14 82.0 71 56.3
MBI18_g46513_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 2.3e-14 82.0 72 59.7
BcaC05g27577 Brassica carinata HOM05D004817 ORTHO05D005790 3.0e-14 81.6 71 53.5
C05p35610 Brassica napus HOM05D004817 ORTHO05D005790 3.0e-14 81.6 71 53.5
CARHR092890 Cardamine hirsuta HOM05D004817 ORTHO05D005790 3.0e-14 81.6 71 57.7
BcaB06g25835 Brassica carinata HOM05D004817 ORTHO05D005790 3.9e-14 81.3 73 58.9
C05p48800 Brassica napus HOM05D004817 ORTHO05D005790 3.9e-14 81.3 75 58.7
BolC5t33617H Brassica oleracea HOM05D004817 ORTHO05D005790 3.9e-14 81.3 75 58.7
AL3G30650 Arabidopsis lyrata HOM05D004817 ORTHO05D005790 5.0e-14 80.9 74 59.5
AT3G17580 Arabidopsis thaliana HOM05D004817 ORTHO05D005790 5.0e-14 80.9 74 59.5
BraA06t23656Z Brassica rapa HOM05D004817 ORTHO05D005790 5.0e-14 80.9 71 53.5
Carub.0003s1729 Capsella rubella HOM05D004817 ORTHO05D005790 5.0e-14 80.9 73 58.9
unitig_746.g26894 Utricularia gibba HOM05D004817 ORTHO05D005790 5.0e-14 80.9 77 55.8
BcaC05g28773 Brassica carinata HOM05D004817 ORTHO05D005790 6.6e-14 80.5 75 57.3
A05p32270 Brassica napus HOM05D004817 ORTHO05D005790 8.6e-14 80.1 75 57.3
BraA05t22056Z Brassica rapa HOM05D004817 ORTHO05D005790 8.6e-14 80.1 75 57.3
CDE02G4689 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 8.6e-14 80.1 72 59.7
Thhalv10022414m.g Eutrema salsugineum HOM05D004817 ORTHO05D005790 8.6e-14 80.1 82 53.7
Peaxi162Scf00323g00924 Petunia axillaris HOM05D004817 ORTHO05D005790 8.6e-14 80.1 71 59.2
unitig_744.g24175 Utricularia gibba HOM05D004817 ORTHO05D005790 8.6e-14 80.1 78 56.4
Aa31LG10G5430 Aethionema arabicum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 76 55.3
PGSC0003DMG400004597 Solanum tuberosum HOM05D004817 ORTHO05D005790 1.1e-13 79.7 71 57.7
Solyc12g098880.2 Solanum lycopersicum HOM05D004817 ORTHO05D005790 1.5e-13 79.3 71 56.3
Aa31LG8G4450 Aethionema arabicum HOM05D004817 ORTHO05D005790 2.5e-13 78.6 78 55.1
BcaC09g48714 Brassica carinata HOM05D004817 ORTHO05D005790 4.3e-13 77.8 77 55.8
DCAR_023420 Daucus carota HOM05D004817 ORTHO05D005790 4.3e-13 77.8 81 54.3
Sp3g15710 Schrenkiella parvula HOM05D004817 ORTHO05D005790 4.3e-13 77.8 75 57.3
MBI18_g40079_MAGBIO Magnolia biondii HOM05D004817 ORTHO05D005790 5.6e-13 77.4 72 56.9
BcaB04g20835 Brassica carinata HOM05D004817 ORTHO05D005790 7.3e-13 77.0 76 53.9
BcaC01g03751 Brassica carinata HOM05D004817 ORTHO05D005790 7.3e-13 77.0 75 57.3
BolC3t17174H Brassica oleracea HOM05D004817 ORTHO05D005790 7.3e-13 77.0 75 57.3
BcaB04g18952 Brassica carinata HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 57.3
A01p36770 Brassica napus HOM05D004817 ORTHO05D005790 9.5e-13 76.6 78 53.8
A03p40250 Brassica napus HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 57.3
C03p48950 Brassica napus HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 57.3
BraA01t03738Z Brassica rapa HOM05D004817 ORTHO05D005790 9.5e-13 76.6 78 53.8
BraA03t13178Z Brassica rapa HOM05D004817 ORTHO05D005790 9.5e-13 76.6 75 57.3
PSO761G0543 Papaver somniferum HOM05D004817 ORTHO05D005790 9.5e-13 76.6 73 60.3
Eucgr.H01515 Eucalyptus grandis HOM05D004817 ORTHO05D005790 1.2e-12 76.3 79 57.0
Sopen12g033630 Solanum pennellii HOM05D004817 ORTHO05D005790 1.2e-12 76.3 69 56.5
DCAR_026926 Daucus carota HOM05D004817 ORTHO05D005790 2.8e-12 75.1 72 55.6
DCAR_030417 Daucus carota HOM05D004817 ORTHO05D005790 3.6e-12 74.7 94 48.9
DCAR_002559 Daucus carota HOM05D004817 ORTHO05D005790 8.1e-12 73.6 80 51.2
unitig_21.g20684 Utricularia gibba HOM05D004817 ORTHO05D005790 8.1e-12 73.6 81 53.1
Nitab4.5_0000978g0020 Nicotiana tabacum HOM05D004817 ORTHO05D005790 1.4e-11 72.8 74 55.4
ATR0796G174 Amborella trichopoda HOM05D004817 ORTHO05D005790 4.0e-11 71.2 76 51.3
CDE08G0719 Ceratophyllum demersum HOM05D004817 ORTHO05D005790 4.0e-11 71.2 71 54.9
Nitab4.5_0003998g0090 Nicotiana tabacum HOM05D004817 ORTHO05D005790 6.8e-11 70.5 74 54.1
Zm00001eb332330 Zea mays HOM05D004817 ORTHO05D005790 1.2e-10 69.7 76 48.7
CANSAT78G0586 Cannabis sativa HOM05D004817 ORTHO05D005790 4.4e-10 67.8 82 48.8
Zm00001eb129600 Zea mays HOM05D004817 ORTHO05D005790 3.7e-09 64.7 75 46.7
Os01g0288200 Oryza sativa ssp. japonica HOM05D004817 ORTHO05D005790 8.3e-09 63.5 75 50.7
Zm00001eb354550 Zea mays HOM05D004817 ORTHO05D005790 6.0e-07 57.4 94 41.5
TAR365G0774 Trochodendron aralioides HOM05D004817 ORTHO05D005790 3.0e-06 55.1 81 44.4


User provided reference genes

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