Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2278 Punica granatum HOM05D005218 ORTHO05D006657 1.2e-250 869.4 440 100.0
Eucgr.K01318 Eucalyptus grandis HOM05D005218 ORTHO05D006657 3.2e-203 711.8 440 79.3
Atru.chr8.19_Atru.chr8.20 Acer truncatum HOM05D005218 ORTHO05D006657 4.1e-203 711.4 438 79.0
Manes.08G165900 Manihot esculenta HOM05D005218 ORTHO05D006657 2.3e-201 705.7 437 79.6
Manes.09G119600 Manihot esculenta HOM05D005218 ORTHO05D006657 3.8e-196 688.3 438 77.4
Duzib268G1588 Durio zibethinus HOM05D005218 ORTHO05D006657 6.4e-196 687.6 433 77.8
CANSAT21G2189 Cannabis sativa HOM05D005218 ORTHO05D006657 3.2e-195 685.3 438 75.8
QL07p030229 Quercus lobata HOM05D005218 ORTHO05D006657 5.4e-195 684.5 436 76.6
Cfa016978 Carpinus fangiana HOM05D005218 ORTHO05D006657 2.7e-194 682.2 438 75.3
GSVIVG01029830001 Vitis vinifera HOM05D005218 ORTHO05D006657 7.8e-194 680.6 440 76.1
Prupe.6G300700 Prunus persica HOM05D005218 ORTHO05D006657 3.0e-193 678.7 436 77.1
Potri.016G143700 Populus trichocarpa HOM05D005218 ORTHO05D006657 1.1e-192 676.8 439 76.8
Thecc.04G061600 Theobroma cacao HOM05D005218 ORTHO05D006657 1.9e-192 676.0 433 76.2
Ciclev10011748m.g Citrus clementina HOM05D005218 ORTHO05D006657 3.3e-192 675.2 438 75.8
TWI74G0252 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 9.6e-192 673.7 438 74.4
TAR369G0292 Trochodendron aralioides HOM05D005218 ORTHO05D006657 2.1e-191 672.5 438 76.3
Hma1.2p1_1020F.1_g248500 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 4.7e-191 671.4 438 74.7
Gorai.005G001100 Gossypium raimondii HOM05D005218 ORTHO05D006657 2.4e-190 669.1 436 75.0
arahy.Tifrunner.gnm1.ann1.6F524X Arachis hypogaea HOM05D005218 ORTHO05D006657 3.1e-190 668.7 433 74.6
Dinv16915 Davidia involucrata HOM05D005218 ORTHO05D006657 3.1e-190 668.7 438 74.7
Gohir.A02G000400 Gossypium hirsutum HOM05D005218 ORTHO05D006657 4.0e-190 668.3 436 74.8
Peaxi162Scf00374g00623 Petunia axillaris HOM05D005218 ORTHO05D006657 1.5e-189 666.4 438 73.7
COL.COLO4_20050 Corchorus olitorius HOM05D005218 ORTHO05D006657 2.0e-189 666.0 437 73.7
Gohir.D02G000700 Gossypium hirsutum HOM05D005218 ORTHO05D006657 2.0e-189 666.0 436 74.5
MD04G1181300 Malus domestica HOM05D005218 ORTHO05D006657 2.0e-189 666.0 439 74.7
Phvul.010G060400 Phaseolus vulgaris HOM05D005218 ORTHO05D006657 3.4e-189 665.2 433 73.7
RcHm_v2.0_Chr3g0459311 Rosa chinensis HOM05D005218 ORTHO05D006657 3.4e-189 665.2 430 77.2
Solyc10g074690.2 Solanum lycopersicum HOM05D005218 ORTHO05D006657 9.9e-189 663.7 434 74.0
TWI77G0041 Tripterygium wilfordii HOM05D005218 ORTHO05D006657 3.8e-188 661.8 438 73.1
CSS0045446 Camellia sinensis var. sinensis HOM05D005218 ORTHO05D006657 8.4e-188 660.6 439 73.8
Sopen10g027170 Solanum pennellii HOM05D005218 ORTHO05D006657 8.4e-188 660.6 434 73.7
CAN.G455.1 Capsicum annuum HOM05D005218 ORTHO05D006657 1.4e-187 659.8 438 73.5
MD12G1196200 Malus domestica HOM05D005218 ORTHO05D006657 1.4e-187 659.8 439 74.7
arahy.Tifrunner.gnm1.ann1.M7CUXC Arachis hypogaea HOM05D005218 ORTHO05D006657 2.4e-187 659.1 433 73.9
VMungo0331G1207 Vigna mungo HOM05D005218 ORTHO05D006657 2.1e-186 656.0 433 72.5
Hund19374 Selenicereus undatus HOM05D005218 ORTHO05D006657 1.3e-185 653.3 431 75.2
Cc06_g00030 Coffea canephora HOM05D005218 ORTHO05D006657 3.9e-185 651.7 433 72.5
Ca_23103_v3 Cicer arietinum L. HOM05D005218 ORTHO05D006657 1.5e-184 649.8 432 72.2
FAN02G3856 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.5e-184 649.8 439 73.8
Glyma.16G222300 Glycine max HOM05D005218 ORTHO05D006657 5.6e-184 647.9 433 72.5
Glyma.03G000700 Glycine max HOM05D005218 ORTHO05D006657 7.3e-184 647.5 437 72.3
Ah.04g166670 Amaranthus hybridus HOM05D005218 ORTHO05D006657 4.8e-183 644.8 432 73.6
Migut.J00001 Erythranthe guttata HOM05D005218 ORTHO05D006657 1.1e-182 643.7 430 72.6
AL6G10010 Arabidopsis lyrata HOM05D005218 ORTHO05D006657 3.1e-182 642.1 430 72.8
AT5G01010 Arabidopsis thaliana HOM05D005218 ORTHO05D006657 9.0e-182 640.6 430 72.8
MSTRG.5474 Avicennia marina HOM05D005218 ORTHO05D006657 3.4e-181 638.6 429 73.0
THA.LOC104816146 Tarenaya hassleriana HOM05D005218 ORTHO05D006657 4.5e-181 638.3 447 71.1
Rhsim04G0119400 Rhododendron simsii HOM05D005218 ORTHO05D006657 1.9e-179 632.9 476 67.4
CARHR212360 Cardamine hirsuta HOM05D005218 ORTHO05D006657 3.2e-179 632.1 431 71.9
Carub.0024s0001 Capsella rubella HOM05D005218 ORTHO05D006657 1.6e-178 629.8 433 71.1
Aqoxy2G00608 Aquilegia oxysepala HOM05D005218 ORTHO05D006657 2.1e-178 629.4 433 71.4
Thhalv10013603m.g Eutrema salsugineum HOM05D005218 ORTHO05D006657 2.1e-178 629.4 430 71.6
Sabra06G0088900 Salix brachista HOM05D005218 ORTHO05D006657 2.1e-178 629.4 434 72.6
MELO3C025278.2 Cucumis melo HOM05D005218 ORTHO05D006657 2.7e-178 629.0 436 70.4
Nn5g26729 Nelumbo nucifera HOM05D005218 ORTHO05D006657 3.5e-178 628.6 432 70.6
Sp6g41230 Schrenkiella parvula HOM05D005218 ORTHO05D006657 3.5e-178 628.6 430 71.9
Lj2A53G27 Lonicera japonica HOM05D005218 ORTHO05D006657 1.0e-177 627.1 462 69.0
ECA236G4239 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.8e-177 626.3 435 69.2
BcaB01g06261 Brassica carinata HOM05D005218 ORTHO05D006657 2.3e-177 625.9 431 71.7
Sed0017962 Sechium edule HOM05D005218 ORTHO05D006657 2.3e-177 625.9 436 70.2
Lsat_1_v5_gn_8_108900 Lactuca sativa HOM05D005218 ORTHO05D006657 3.0e-177 625.5 440 70.0
CsaV3_4G013540 Cucumis sativus L. HOM05D005218 ORTHO05D006657 3.9e-177 625.2 436 70.0
Sabra04G0159600 Salix brachista HOM05D005218 ORTHO05D006657 6.7e-177 624.4 443 71.3
MBI15_g33472_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 5.6e-176 621.3 433 69.7
Lalb_Chr13g0290271 Lupinus albus HOM05D005218 ORTHO05D006657 1.3e-175 620.2 435 70.6
HanXRQChr11g0329321 Helianthus annuus HOM05D005218 ORTHO05D006657 2.8e-175 619.0 426 70.7
BcaC03g13099 Brassica carinata HOM05D005218 ORTHO05D006657 4.8e-175 618.2 429 70.6
unitig_699.g19018 Utricularia gibba HOM05D005218 ORTHO05D006657 6.2e-175 617.8 429 69.7
HanXRQChr14g0445831 Helianthus annuus HOM05D005218 ORTHO05D006657 2.6e-173 612.5 442 69.5
Aa31LG5G11280 Aethionema arabicum HOM05D005218 ORTHO05D006657 5.8e-173 611.3 415 71.3
BraA03t09386Z Brassica rapa HOM05D005218 ORTHO05D006657 3.8e-172 608.6 472 65.5
BraA02t04669Z Brassica rapa HOM05D005218 ORTHO05D006657 6.0e-170 601.3 474 63.9
Medtr8g005040 Medicago truncatula HOM05D005218 ORTHO05D006657 7.9e-170 600.9 433 68.6
BNapus_Darmor_BZH_scaffold_209p00020 Brassica napus HOM05D005218 ORTHO05D006657 8.7e-169 597.4 415 70.1
BolC2t05996H Brassica oleracea HOM05D005218 ORTHO05D006657 1.1e-168 597.0 473 64.1
ECA248G3767 Erigeron canadensis HOM05D005218 ORTHO05D006657 1.5e-168 596.7 432 67.6
SGA_v2.0_scaffold85G26585 Striga asiatica HOM05D005218 ORTHO05D006657 9.6e-168 594.0 525 58.3
PSO384G1586 Papaver somniferum HOM05D005218 ORTHO05D006657 1.1e-166 590.5 438 65.8
Nitab4.5_0003037g0020 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.0e-164 583.9 438 67.6
CDE06G0216 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 1.3e-164 583.6 436 65.8
Zm00001eb284640 Zea mays HOM05D005218 ORTHO05D006657 1.3e-164 583.6 436 66.5
DCAR_023955 Daucus carota HOM05D005218 ORTHO05D006657 1.4e-163 580.1 518 58.5
Nitab4.5_0002139g0070 Nicotiana tabacum HOM05D005218 ORTHO05D006657 1.9e-163 579.7 438 66.9
Os05g0306000 Oryza sativa ssp. japonica HOM05D005218 ORTHO05D006657 1.0e-161 573.9 438 66.7
Sabra04G0159700 Salix brachista HOM05D005218 ORTHO05D006657 1.9e-160 569.7 428 69.2
EL10Ac4g10395 Beta vulgaris HOM05D005218 ORTHO05D006657 7.4e-160 567.8 421 67.9
FAN05G1148 Fragaria x ananassa HOM05D005218 ORTHO05D006657 2.8e-159 565.8 442 67.2
PSO339G0748 Papaver somniferum HOM05D005218 ORTHO05D006657 2.6e-157 559.3 453 62.5
ClCG04G005100 Citrullus lanatus HOM05D005218 ORTHO05D006657 7.7e-157 557.8 436 64.7
Actinidia20812 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.7e-156 556.6 375 73.3
FvH4_6g09090 Fragaria vesca HOM05D005218 ORTHO05D006657 1.8e-153 546.6 380 73.2
FAN14G0475 Fragaria x ananassa HOM05D005218 ORTHO05D006657 4.3e-152 542.0 380 72.6
Sc02g0000100 Simmondsia chinensis HOM05D005218 ORTHO05D006657 4.3e-152 542.0 379 70.7
Lj3g0026233 Lotus japonicus HOM05D005218 ORTHO05D006657 5.7e-152 541.6 376 71.0
Hma1.2p1_1020F.1_g248520 Hydrangea macrophylla HOM05D005218 ORTHO05D006657 7.7e-149 531.2 362 72.9
Haze_21230 Corylus avellana HOM05D005218 ORTHO05D006657 2.5e-147 526.2 456 60.7
TPR.G30733 Trifolium pratense HOM05D005218 ORTHO05D006657 1.0e-145 520.8 728 42.7
Psat2g191240 Pisum sativum HOM05D005218 ORTHO05D006657 7.7e-141 504.6 362 69.9
Lsat_1_v5_gn_5_153501 Lactuca sativa HOM05D005218 ORTHO05D006657 4.7e-138 495.4 430 60.2
vmacro08964 Vaccinium macrocarpon HOM05D005218 ORTHO05D006657 2.8e-135 486.1 700 42.4
AagrBONN_evm.TU.Sc2ySwM_228.4747 Anthoceros agrestis HOM05D005218 ORTHO05D006657 1.0e-129 467.6 448 54.7
SMO198G0089 Selaginella moellendorffii HOM05D005218 ORTHO05D006657 1.0e-124 451.1 432 51.9
FAN09G2324 Fragaria x ananassa HOM05D005218 ORTHO05D006657 1.7e-124 450.3 317 73.2
QL07p030634 Quercus lobata HOM05D005218 ORTHO05D006657 1.7e-124 450.3 300 74.7
BolC3t12584H Brassica oleracea HOM05D005218 ORTHO05D006657 7.2e-123 444.9 339 66.7
Mapoly0045s0012 Marchantia polymorpha HOM05D005218 ORTHO05D006657 1.2e-122 444.1 444 50.5
BcaB01g06128 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-120 436.8 341 64.8
Oeu027654.1 Olea europaea HOM05D005218 ORTHO05D006657 1.5e-112 410.6 295 69.5
CBR_g279 Chara braunii HOM05D005218 ORTHO05D006657 2.6e-112 409.8 436 50.0
Pp3c6_1360 Physcomitrium patens HOM05D005218 ORTHO05D006657 9.2e-102 374.8 352 53.7
Cpa.g.sc1919.1 Carica papaya HOM05D005218 ORTHO05D006657 7.1e-94 348.6 223 78.5
MBI03_g45858_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 8.3e-87 325.1 247 68.8
AUR62006464 Chenopodium quinoa HOM05D005218 ORTHO05D006657 2.5e-83 313.5 219 71.7
RcHm_v2.0_Chr4g0423451 Rosa chinensis HOM05D005218 ORTHO05D006657 1.1e-75 288.1 237 66.2
RcHm_v2.0_Chr3g0481991 Rosa chinensis HOM05D005218 ORTHO05D006657 1.3e-68 264.6 215 66.5
RcHm_v2.0_Chr2g0142661 Rosa chinensis HOM05D005218 ORTHO05D006657 6.6e-68 262.3 283 54.1
PRCOL_00004779 Prasinoderma coloniale HOM05D005218 ORTHO05D006657 9.9e-64 248.4 429 34.0
CiPaw.09G224300 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.3e-63 248.1 161 77.0
Actinidia35793 Actinidia chinensis HOM05D005218 ORTHO05D006657 1.6e-61 241.1 140 81.4
Actinidia32581 Actinidia chinensis HOM05D005218 ORTHO05D006657 2.8e-58 230.3 439 36.4
SEGI_33787 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 6.9e-57 225.7 159 70.4
CDE07G0921 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 6.0e-53 212.6 131 79.4
CiPaw.09G224400 Carya illinoinensis HOM05D005218 ORTHO05D006657 1.6e-50 204.5 140 68.6
AUR62029820 Chenopodium quinoa HOM05D005218 ORTHO05D006657 1.0e-47 195.3 141 68.1
Cre02.g117950 Chlamydomonas reinhardtii HOM05D005218 ORTHO05D006657 3.7e-42 176.8 318 34.0
CDE07G0273 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 9.4e-38 162.2 149 51.7
A07p02820 Brassica napus HOM05D005218 ORTHO05D006657 6.1e-37 159.5 200 48.0
BraA07t28080Z Brassica rapa HOM05D005218 ORTHO05D006657 2.3e-36 157.5 193 48.7
Sabra12G0043200 Salix brachista HOM05D005218 ORTHO05D006657 1.5e-27 128.3 146 51.4
RcHm_v2.0_Chr3g0494831 Rosa chinensis HOM05D005218 ORTHO05D006657 2.8e-26 124.0 97 61.9
CDE07G0892 Ceratophyllum demersum HOM05D005218 ORTHO05D006657 4.1e-25 120.2 120 54.2
Carub.0005s0002 Capsella rubella HOM05D005218 ORTHO05D006657 8.0e-21 105.9 55 83.6
Lsat_1_v5_gn_2_39840 Lactuca sativa HOM05D000613 ORTHO05D000446 1.8e-17 94.7 71 63.4
Lsat_1_v5_gn_8_9201 Lactuca sativa HOM05D005218 ORTHO05D000446 1.2e-16 92.0 71 63.4
Lsat_1_v5_gn_8_105921 Lactuca sativa HOM05D005218 ORTHO05D002018 5.9e-16 89.7 79 54.4
Lsat_1_v5_gn_4_157281 Lactuca sativa HOM05D005218 ORTHO05D000446 7.7e-16 89.4 71 62.0
SEGI_25208 Sequoiadendron giganteum HOM05D005218 ORTHO05D006657 1.9e-14 84.7 85 43.5
BcaB01g06129 Brassica carinata HOM05D005218 ORTHO05D006657 2.0e-11 74.7 54 68.5
Duzib151G1109 Durio zibethinus HOM05D005218 ORTHO05D000596 6.3e-10 69.7 43 69.8
MBI07_g27400_MAGBIO Magnolia biondii HOM05D005218 ORTHO05D006657 6.3e-10 69.7 47 66.0
Lsat_1_v5_gn_5_172481 Lactuca sativa HOM05D001702 ORTHO05D001791 6.5e-07 59.7 42 61.9
RcHm_v2.0_Chr2g0163341 Rosa chinensis HOM05D005218 ORTHO05D006657 6.5e-07 59.7 39 74.4
MBI15_g23976_MAGBIO Magnolia biondii HOM05D003694 ORTHO05D004212 7.2e-06 56.2 39 74.4


User provided reference genes

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