Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2266 Punica granatum HOM05D007104 ORTHO05D008851 0.0e+00 1251.1 779 100.0
CiPaw.09G181900 Carya illinoinensis HOM05D007104 ORTHO05D008851 1.4e-207 727.2 802 65.5
GSVIVG01025541001 Vitis vinifera HOM05D007104 ORTHO05D008851 4.3e-201 705.7 785 62.0
Thecc.05G052200 Theobroma cacao HOM05D007104 ORTHO05D008851 4.2e-196 689.1 802 61.6
Gohir.A04G077100 Gossypium hirsutum HOM05D007104 ORTHO05D008851 3.6e-195 686.0 803 59.9
Gorai.009G420800 Gossypium raimondii HOM05D007104 ORTHO05D008851 2.3e-194 683.3 804 59.7
Duzib128G0648 Durio zibethinus HOM05D007104 ORTHO05D008851 4.8e-192 675.6 801 59.9
Hma1.2p1_0111F.1_g053700 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 4.8e-192 675.6 799 59.1
Cfa017487 Carpinus fangiana HOM05D007104 ORTHO05D008851 4.1e-191 672.5 784 63.4
MD12G1126500 Malus domestica HOM05D007104 ORTHO05D008851 2.5e-188 663.3 802 59.4
TAR633G1446 Trochodendron aralioides HOM05D007104 ORTHO05D008851 4.2e-188 662.5 803 59.4
Ciclev10011055m.g Citrus clementina HOM05D007104 ORTHO05D008851 2.7e-187 659.8 770 60.1
Manes.08G001800 Manihot esculenta HOM05D007104 ORTHO05D008851 6.7e-186 655.2 780 60.3
Haze_20670 Corylus avellana HOM05D007104 ORTHO05D008851 1.1e-185 654.4 805 59.8
QL07p045556 Quercus lobata HOM05D007104 ORTHO05D008851 3.3e-185 652.9 799 61.1
Dinv35696 Davidia involucrata HOM05D007104 ORTHO05D008851 4.8e-184 649.0 799 59.7
RcHm_v2.0_Chr3g0468421 Rosa chinensis HOM05D007104 ORTHO05D008851 4.8e-184 649.0 794 58.6
Potri.006G132700 Populus trichocarpa HOM05D007104 ORTHO05D008851 2.0e-182 643.7 780 58.5
Sabra06G0104200 Salix brachista HOM05D007104 ORTHO05D008851 1.0e-181 641.3 777 57.5
FAN14G4814 Fragaria x ananassa HOM05D007104 ORTHO05D008851 2.5e-180 636.7 794 57.6
Actinidia05278 Actinidia chinensis HOM05D007104 ORTHO05D008851 4.2e-180 636.0 793 61.0
FAN05G0960 Fragaria x ananassa HOM05D007104 ORTHO05D008851 7.2e-180 635.2 794 57.7
FvH4_6g15120 Fragaria vesca HOM05D007104 ORTHO05D008851 2.6e-177 626.7 794 57.2
COL.COLO4_27102 Corchorus olitorius HOM05D007104 ORTHO05D008851 1.7e-176 624.0 693 64.1
CSS0009185 Camellia sinensis var. sinensis HOM05D007104 ORTHO05D008851 1.8e-175 620.5 792 59.6
Sopen09g002070 Solanum pennellii HOM05D007104 ORTHO05D008851 2.0e-174 617.1 793 58.4
Solyc09g007200.4 Solanum lycopersicum HOM05D007104 ORTHO05D008851 2.6e-174 616.7 791 58.5
Sc01g0003660 Simmondsia chinensis HOM05D007104 ORTHO05D008851 4.5e-174 615.9 742 59.4
Peaxi162Scf00005g05111 Petunia axillaris HOM05D007104 ORTHO05D008851 1.7e-173 614.0 799 57.1
DCAR_017721 Daucus carota HOM05D007104 ORTHO05D008851 2.2e-173 613.6 791 60.1
Sed0027238 Sechium edule HOM05D007104 ORTHO05D008851 2.5e-172 610.1 773 58.3
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 3.2e-172 609.8 784 50.3
Thhalv10012661m.g Eutrema salsugineum HOM05D007104 ORTHO05D008851 7.2e-172 608.6 791 50.3
Nitab4.5_0000848g0180 Nicotiana tabacum HOM05D007104 ORTHO05D008851 1.6e-171 607.4 795 52.8
Gohir.D04G116200 Gossypium hirsutum HOM05D007104 ORTHO05D008851 1.4e-170 604.4 688 61.8
Sp6g39750 Schrenkiella parvula HOM05D007104 ORTHO05D008851 1.5e-169 600.9 778 55.9
Prupe.6G243100 Prunus persica HOM05D007104 ORTHO05D008851 2.6e-169 600.1 797 56.8
Carub.0006s0163 Capsella rubella HOM05D007104 ORTHO05D008851 4.4e-169 599.4 780 56.4
Nitab4.5_0006316g0040 Nicotiana tabacum HOM05D007104 ORTHO05D008851 4.4e-169 599.4 731 62.8
BcaC06g32013 Brassica carinata HOM05D007104 ORTHO05D008851 9.7e-169 598.2 788 55.5
C09p73820 Brassica napus HOM05D007104 ORTHO05D008851 1.7e-168 597.4 787 54.9
BolC9t60116H Brassica oleracea HOM05D007104 ORTHO05D008851 1.7e-168 597.4 787 54.9
Nn2g12960 Nelumbo nucifera HOM05D007104 ORTHO05D008851 1.7e-168 597.4 787 56.3
AL6G12100 Arabidopsis lyrata HOM05D007104 ORTHO05D008851 2.8e-168 596.7 773 56.4
A10p32890 Brassica napus HOM05D007104 ORTHO05D008851 1.1e-167 594.7 778 56.2
BraA10t45326Z Brassica rapa HOM05D007104 ORTHO05D008851 1.1e-167 594.7 778 56.2
THA.LOC104826989 Tarenaya hassleriana HOM05D007104 ORTHO05D008851 2.4e-167 593.6 778 55.7
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 9.1e-167 591.7 740 58.2
MSTRG.19128 Avicennia marina HOM05D007104 ORTHO05D008851 2.0e-166 590.5 780 57.2
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 3.5e-166 589.7 730 58.6
AT5G02830 Arabidopsis thaliana HOM05D007104 ORTHO05D008851 7.7e-166 588.6 769 55.9
Glyma.19G177700 Glycine max HOM05D007104 ORTHO05D008851 7.7e-166 588.6 767 57.6
TWI18G0316 Tripterygium wilfordii HOM05D007104 ORTHO05D008851 7.7e-166 588.6 779 60.1
vmacro08689 Vaccinium macrocarpon HOM05D007104 ORTHO05D008851 1.3e-165 587.8 797 56.2
VMungo1383G0332 Vigna mungo HOM05D007104 ORTHO05D008851 2.2e-165 587.0 770 59.5
Migut.J00404 Erythranthe guttata HOM05D007104 ORTHO05D008851 5.0e-165 585.9 792 55.4
Lj1g0014647 Lotus japonicus HOM05D007104 ORTHO05D008851 5.0e-165 585.9 786 55.9
AUR62040527 Chenopodium quinoa HOM05D007104 ORTHO05D008851 1.1e-164 584.7 783 50.1
Phvul.001G174000 Phaseolus vulgaris HOM05D007104 ORTHO05D008851 1.2e-163 581.3 793 55.6
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 2.1e-163 580.5 765 56.6
arahy.Tifrunner.gnm1.ann1.Z3T1FA Arachis hypogaea HOM05D007104 ORTHO05D008851 3.6e-163 579.7 783 48.0
arahy.Tifrunner.gnm1.ann1.UD3AFU Arachis hypogaea HOM05D007104 ORTHO05D008851 6.1e-163 578.9 783 47.9
FAN09G1206 Fragaria x ananassa HOM05D007104 ORTHO05D008851 4.0e-162 576.2 794 55.0
CAN.G350.45 Capsicum annuum HOM05D007104 ORTHO05D008851 6.8e-162 575.5 699 62.1
Lj3C977G16 Lonicera japonica HOM05D007104 ORTHO05D008851 1.7e-160 570.9 783 56.2
Lalb_Chr20g0112911 Lupinus albus HOM05D007104 ORTHO05D008851 6.3e-160 568.9 696 61.1
CsaV3_4G024380 Cucumis sativus L. HOM05D007104 ORTHO05D008851 1.1e-159 568.2 770 57.1
ATR0594G196 Amborella trichopoda HOM05D007104 ORTHO05D008851 1.8e-159 567.4 804 53.2
Aa31LG1G22070 Aethionema arabicum HOM05D007104 ORTHO05D008851 4.5e-158 562.8 810 46.4
CANSAT80G1630 Cannabis sativa HOM05D007104 ORTHO05D008851 5.0e-157 559.3 793 53.5
Cc06_g03420 Coffea canephora HOM05D007104 ORTHO05D008851 6.6e-157 558.9 796 55.3
SalBow3G1198 Salvia bowleyana HOM05D007104 ORTHO05D008851 2.1e-155 553.9 816 48.0
Psat3g045920 Pisum sativum HOM05D007104 ORTHO05D008851 1.4e-154 551.2 750 56.3
MELO3C003069.2 Cucumis melo HOM05D007104 ORTHO05D008851 4.0e-154 549.7 784 46.2
PSO339G1446 Papaver somniferum HOM05D007104 ORTHO05D008851 8.3e-152 542.0 794 53.8
Lsat_1_v5_gn_2_109900 Lactuca sativa HOM05D007104 ORTHO05D008851 4.1e-151 539.7 799 52.9
ClCG04G008780 Citrullus lanatus HOM05D007104 ORTHO05D008851 7.0e-151 538.9 776 55.2
Hund12063 Selenicereus undatus HOM05D007104 ORTHO05D008851 9.2e-151 538.5 808 46.7
HanXRQChr05g0129241 Helianthus annuus HOM05D007104 ORTHO05D008851 3.5e-150 536.6 796 53.3
PSO384G2670 Papaver somniferum HOM05D007104 ORTHO05D008851 7.8e-150 535.4 793 54.2
MBI05_g33311_MAGBIO Magnolia biondii HOM05D007104 ORTHO05D008851 6.6e-149 532.3 771 54.9
ECA238G4406 Erigeron canadensis HOM05D001465 ORTHO05D001434 1.2e-147 528.1 814 48.6
SGA_v2.0_scaffold126G33879 Striga asiatica HOM05D007104 ORTHO05D008851 4.7e-147 526.2 761 54.5
Eucgr.K03203 Eucalyptus grandis HOM05D007104 ORTHO05D008851 3.9e-141 506.5 573 67.5
AUR62042917 Chenopodium quinoa HOM05D007104 ORTHO05D008851 2.9e-136 490.3 777 42.7
Os03g0284900 Oryza sativa ssp. japonica HOM05D007104 ORTHO05D008851 1.2e-123 448.4 766 43.2
HPP92_003603 Vanilla planifolia HOM05D007104 ORTHO05D008851 4.2e-119 433.3 731 48.7
Glyma.03G177000 Glycine max HOM05D007104 ORTHO05D008851 2.1e-107 394.4 522 64.8
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 5.3e-106 389.8 791 43.5
Aqoxy2G01885 Aquilegia oxysepala HOM05D007104 ORTHO05D008851 2.0e-97 361.3 492 53.7
Cpa.g.sc45.26 Carica papaya HOM05D007104 ORTHO05D008851 5.8e-89 333.2 520 59.4
Oeu034822.1 Olea europaea HOM05D007104 ORTHO05D008851 6.3e-83 313.2 409 60.4
Atru.chr8.2537 Acer truncatum HOM05D007104 ORTHO05D008851 2.2e-80 304.7 408 63.2
Pp3c22_3070 Physcomitrium patens HOM05D007104 ORTHO05D008851 6.1e-78 296.6 780 40.9
Zm00001eb397200 Zea mays HOM05D007104 ORTHO05D008851 7.4e-76 289.7 653 32.5
Mapoly0039s0098 Marchantia polymorpha HOM05D007104 ORTHO05D008851 1.0e-69 269.2 758 41.4
Pp3c21_12360 Physcomitrium patens HOM05D007104 ORTHO05D008851 3.0e-69 267.7 777 39.0
Atru.chr8.2538 Acer truncatum HOM05D007104 ORTHO05D008851 1.1e-58 232.6 233 45.9
CARHR210500 Cardamine hirsuta HOM05D007104 ORTHO05D008851 1.5e-47 195.7 225 52.4
unitig_16.g32855 Utricularia gibba HOM05D007104 ORTHO05D008851 4.2e-47 194.1 222 51.8
SMO351G0222 Selaginella moellendorffii HOM05D007104 ORTHO05D008851 5.2e-45 187.2 495 34.5
CDE02G1389 Ceratophyllum demersum HOM05D007104 ORTHO05D008851 7.7e-41 173.3 306 51.0
Pp3c22_3080 Physcomitrium patens HOM05D007104 ORTHO05D008851 1.7e-24 119.0 209 36.8
Oeu027653.1 Olea europaea HOM05D007104 ORTHO05D008851 1.5e-23 115.9 159 37.7
Rhsim04G0181000 Rhododendron simsii HOM05D007104 ORTHO05D008851 4.0e-21 107.8 119 59.7
Hma1.2p1_0111F.1_g053720 Hydrangea macrophylla HOM05D007104 ORTHO05D008851 7.5e-20 103.6 129 39.5
RcHm_v2.0_Chr3g0468351 Rosa chinensis HOM05D007104 ORTHO05D008851 3.9e-16 91.3 74 60.8
CBR_g39241 Chara braunii HOM05D007104 ORTHO05D008851 1.4e-10 72.8 172 56.4


User provided reference genes

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