Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2260 Punica granatum HOM05D005994 ORTHO05D007322 4.5e-52 207.6 101 100.0
arahy.Tifrunner.gnm1.ann1.CR688Y Arachis hypogaea HOM05D005994 ORTHO05D007322 1.2e-49 199.5 100 95.0
arahy.Tifrunner.gnm1.ann1.R43TP7 Arachis hypogaea HOM05D005994 ORTHO05D007322 1.2e-49 199.5 100 95.0
ClCG01G010630 Citrullus lanatus HOM05D005994 ORTHO05D007322 3.5e-49 198.0 101 95.0
Sed0000308 Sechium edule HOM05D005994 ORTHO05D007322 3.5e-49 198.0 101 94.1
MELO3C025540.2 Cucumis melo HOM05D005994 ORTHO05D007322 7.9e-49 196.8 101 94.1
Glyma.09G011900 Glycine max HOM05D005994 ORTHO05D007322 1.0e-48 196.4 100 93.0
Glyma.15G116500 Glycine max HOM05D005994 ORTHO05D007322 1.0e-48 196.4 100 93.0
Aqoxy4G02214 Aquilegia oxysepala HOM05D005994 ORTHO05D007322 1.8e-48 195.7 100 94.0
EL10Ac4g07614 Beta vulgaris HOM05D005994 ORTHO05D007322 1.8e-48 195.7 100 93.0
Sed0000190 Sechium edule HOM05D005994 ORTHO05D007322 1.8e-48 195.7 101 93.1
VMungo0540G2179 Vigna mungo HOM05D005994 ORTHO05D007322 2.3e-48 195.3 100 92.0
HanXRQChr08g0213481 Helianthus annuus HOM05D005994 ORTHO05D007322 3.0e-48 194.9 101 93.1
Cc05_g14690 Coffea canephora HOM05D005994 ORTHO05D007322 3.9e-48 194.5 100 93.0
Lj6g0002817 Lotus japonicus HOM05D005994 ORTHO05D007322 5.1e-48 194.1 100 92.0
Haze_06972 Corylus avellana HOM05D005994 ORTHO05D007322 6.7e-48 193.7 101 90.1
Gorai.010G249300 Gossypium raimondii HOM05D005994 ORTHO05D007322 6.7e-48 193.7 100 91.0
MD00G1058600 Malus domestica HOM05D005994 ORTHO05D007322 6.7e-48 193.7 101 92.1
Sc03g0008000 Simmondsia chinensis HOM05D005994 ORTHO05D007322 6.7e-48 193.7 100 92.0
Gohir.D06G216900 Gossypium hirsutum HOM05D005994 ORTHO05D007322 8.7e-48 193.4 100 91.0
Prupe.4G007400 Prunus persica HOM05D005994 ORTHO05D007322 8.7e-48 193.4 101 92.1
Duzib235G0800 Durio zibethinus HOM05D005994 ORTHO05D007322 1.1e-47 193.0 100 91.0
Phvul.006G141600 Phaseolus vulgaris HOM05D005994 ORTHO05D007322 1.1e-47 193.0 100 91.0
TPR.G10599 Trifolium pratense HOM05D005994 ORTHO05D007322 1.5e-47 192.6 100 92.0
Ah.06g181210 Amaranthus hybridus HOM05D005994 ORTHO05D007322 1.9e-47 192.2 100 91.0
TWI63G1647 Tripterygium wilfordii HOM05D005994 ORTHO05D007322 1.9e-47 192.2 100 91.0
AUR62017059 Chenopodium quinoa HOM05D005994 ORTHO05D007322 2.5e-47 191.8 100 90.0
Gohir.A06G204600 Gossypium hirsutum HOM05D005994 ORTHO05D007322 2.5e-47 191.8 100 90.0
MD10G1336200 Malus domestica HOM05D005994 ORTHO05D007322 2.5e-47 191.8 101 91.1
Thecc.06G236600 Theobroma cacao HOM05D005994 ORTHO05D007322 2.5e-47 191.8 100 90.0
MSTRG.14470 Avicennia marina HOM05D005994 ORTHO05D007322 3.3e-47 191.4 101 91.1
GSVIVG01037779001 Vitis vinifera HOM05D005994 ORTHO05D007322 3.3e-47 191.4 101 91.1
CANSAT56G3985 Cannabis sativa HOM05D005994 ORTHO05D007322 4.3e-47 191.0 101 90.1
FAN25G0933 Fragaria x ananassa HOM05D005994 ORTHO05D007322 4.3e-47 191.0 101 89.1
RcHm_v2.0_Chr5g0000881 Rosa chinensis HOM05D005994 ORTHO05D007322 5.6e-47 190.7 101 89.1
Hund23128 Selenicereus undatus HOM05D005994 ORTHO05D007322 5.6e-47 190.7 100 90.0
COL.COLO4_07784 Corchorus olitorius HOM05D005994 ORTHO05D007322 9.6e-47 189.9 100 89.0
Lalb_Chr03g0035721 Lupinus albus HOM05D005994 ORTHO05D007322 1.3e-46 189.5 101 90.1
FAN21G1761 Fragaria x ananassa HOM05D005994 ORTHO05D007322 1.6e-46 189.1 101 88.1
ECA246G1213 Erigeron canadensis HOM05D005994 ORTHO05D007322 2.1e-46 188.7 101 90.1
Manes.09G081660 Manihot esculenta HOM05D005994 ORTHO05D007322 2.1e-46 188.7 100 90.0
vmacro11561 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 2.1e-46 188.7 101 90.1
CSS0045306 Camellia sinensis var. sinensis HOM05D005994 ORTHO05D007322 2.8e-46 188.3 100 91.0
AUR62040659 Chenopodium quinoa HOM05D005994 ORTHO05D007322 2.8e-46 188.3 100 89.0
Duzib192G0253 Durio zibethinus HOM05D005994 ORTHO05D007322 2.8e-46 188.3 100 89.0
PSO063G2191 Papaver somniferum HOM05D005994 ORTHO05D007322 2.8e-46 188.3 100 89.0
MSTRG.13010 Avicennia marina HOM05D005994 ORTHO05D007322 3.7e-46 188.0 100 88.0
CiPaw.10G079600 Carya illinoinensis HOM05D005994 ORTHO05D007322 3.7e-46 188.0 95 93.7
Migut.M01676 Erythranthe guttata HOM05D005994 ORTHO05D007322 3.7e-46 188.0 101 88.1
Peaxi162Scf00955g00216 Petunia axillaris HOM05D005994 ORTHO05D007322 3.7e-46 188.0 100 89.0
Sopen07g033490 Solanum pennellii HOM05D005994 ORTHO05D007322 3.7e-46 188.0 99 91.9
CARHR222840 Cardamine hirsuta HOM05D005994 ORTHO05D007322 4.8e-46 187.6 100 89.0
Medtr2g026500 Medicago truncatula HOM05D005994 ORTHO05D007322 4.8e-46 187.6 100 89.0
Nitab4.5_0000461g0100 Nicotiana tabacum HOM05D005994 ORTHO05D007322 4.8e-46 187.6 99 90.9
Sabra06G0011700 Salix brachista HOM05D005994 ORTHO05D007322 4.8e-46 187.6 100 89.0
ATR0564G257 Amborella trichopoda HOM05D005994 ORTHO05D007322 6.2e-46 187.2 101 88.1
Potri.006G016300 Populus trichocarpa HOM05D005994 ORTHO05D007322 6.2e-46 187.2 100 89.0
Rhsim06G0226700 Rhododendron simsii HOM05D005994 ORTHO05D007322 6.2e-46 187.2 101 89.1
PGSC0003DMG400022186 Solanum tuberosum HOM05D005994 ORTHO05D007322 6.2e-46 187.2 99 90.9
THA.LOC104810390 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 6.2e-46 187.2 100 90.0
Actinidia05033 Actinidia chinensis HOM05D005994 ORTHO05D007322 8.1e-46 186.8 101 89.1
CDE12G0176 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 8.1e-46 186.8 101 88.1
Eucgr.D00619 Eucalyptus grandis HOM05D005994 ORTHO05D007322 8.1e-46 186.8 99 87.9
Nitab4.5_0000163g0320 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.1e-46 186.8 100 89.0
Nitab4.5_0001750g0060 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.1e-46 186.8 100 89.0
vmacro09668 Vaccinium macrocarpon HOM05D005994 ORTHO05D007322 8.1e-46 186.8 101 89.1
BcaNung00192 Brassica carinata HOM05D005994 ORTHO05D007322 1.1e-45 186.4 100 88.0
A01p21090 Brassica napus HOM05D005994 ORTHO05D007322 1.1e-45 186.4 100 88.0
C01p26360 Brassica napus HOM05D005994 ORTHO05D007322 1.1e-45 186.4 100 88.0
Cfa000074 Carpinus fangiana HOM05D005994 ORTHO05D007322 1.1e-45 186.4 101 87.1
Lalb_Chr19g0129971 Lupinus albus HOM05D005994 ORTHO05D007322 1.1e-45 186.4 101 87.1
Actinidia00094 Actinidia chinensis HOM05D005994 ORTHO05D007322 1.4e-45 186.0 101 88.1
unitig_747.g21642 Utricularia gibba HOM05D005994 ORTHO05D007322 1.4e-45 186.0 100 88.0
Oeu005493.1 Olea europaea HOM05D005994 ORTHO05D007322 1.8e-45 185.7 100 88.0
QL05p068624 Quercus lobata HOM05D005994 ORTHO05D007322 1.8e-45 185.7 100 86.0
QL05p068978 Quercus lobata HOM05D005994 ORTHO05D007322 1.8e-45 185.7 100 86.0
DCAR_013214 Daucus carota HOM05D005994 ORTHO05D007322 2.4e-45 185.3 100 86.0
Oeu005968.1 Olea europaea HOM05D005994 ORTHO05D007322 2.4e-45 185.3 100 87.0
Os08g0431500 Oryza sativa ssp. japonica HOM05D005994 ORTHO05D007322 2.4e-45 185.3 99 87.9
PSO832G1566 Papaver somniferum HOM05D005994 ORTHO05D007322 2.4e-45 185.3 100 88.0
BcaC06g33480 Brassica carinata HOM05D005994 ORTHO05D007322 3.1e-45 184.9 100 87.0
Thhalv10026636m.g Eutrema salsugineum HOM05D005994 ORTHO05D007322 3.1e-45 184.9 100 87.0
AL7G38530 Arabidopsis lyrata HOM05D005994 ORTHO05D007322 4.0e-45 184.5 100 88.0
BcaC09g50351 Brassica carinata HOM05D005994 ORTHO05D007322 4.0e-45 184.5 100 87.0
BolC1t02582H Brassica oleracea HOM05D005994 ORTHO05D007322 4.0e-45 184.5 100 87.0
Carub.0007s2505 Capsella rubella HOM05D005994 ORTHO05D007322 4.0e-45 184.5 100 88.0
Sp7g15010 Schrenkiella parvula HOM05D005994 ORTHO05D007322 4.0e-45 184.5 100 87.0
CsaV3_1G017030 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.3e-45 184.1 94 92.6
CsaV3_UNG053450 Cucumis sativus L. HOM05D005994 ORTHO05D007322 5.3e-45 184.1 94 92.6
Solyc07g065275.1 Solanum lycopersicum HOM05D005994 ORTHO05D007322 5.3e-45 184.1 100 88.0
Ca_00743_v3 Cicer arietinum L. HOM05D005994 ORTHO05D007322 6.9e-45 183.7 100 86.0
THA.LOC104815483 Tarenaya hassleriana HOM05D005994 ORTHO05D007322 6.9e-45 183.7 101 89.1
Aa31LG2G12530 Aethionema arabicum HOM05D005994 ORTHO05D007322 1.2e-44 183.0 100 87.0
SGA_v2.0_scaffold168G38531 Striga asiatica HOM05D005994 ORTHO05D007322 1.2e-44 183.0 101 86.1
Zm00001eb179550 Zea mays HOM05D005994 ORTHO05D007322 1.5e-44 182.6 99 86.9
CDE01G0018 Ceratophyllum demersum HOM05D005994 ORTHO05D007322 2.0e-44 182.2 101 87.1
A03p49850 Brassica napus HOM05D005994 ORTHO05D007322 2.6e-44 181.8 96 89.6
C07p47910 Brassica napus HOM05D005994 ORTHO05D007322 2.6e-44 181.8 96 89.6
BolC7t45314H Brassica oleracea HOM05D005994 ORTHO05D007322 2.6e-44 181.8 96 89.6
BraA03t14080Z Brassica rapa HOM05D005994 ORTHO05D007322 2.6e-44 181.8 96 89.6
AT4G16450 Arabidopsis thaliana HOM05D005994 ORTHO05D007322 3.4e-44 181.4 100 87.0
CAN.G337.28 Capsicum annuum HOM05D005994 ORTHO05D007322 4.5e-44 181.0 99 87.9
Ah.04g166430 Amaranthus hybridus HOM05D000063 ORTHO05D000906 5.8e-44 180.6 94 90.4
FvH4_3g00660 Fragaria vesca HOM05D005994 ORTHO05D007322 5.8e-44 180.6 94 89.4
Psat1g178480 Pisum sativum HOM05D005994 ORTHO05D007322 7.6e-44 180.3 95 88.4
Lsat_1_v5_gn_5_8041 Lactuca sativa HOM05D000063 ORTHO05D000906 2.2e-43 178.7 97 87.6
Sabra16G0013400 Salix brachista HOM05D005994 ORTHO05D007322 2.2e-43 178.7 95 88.4
Potri.016G009600 Populus trichocarpa HOM05D005994 ORTHO05D007322 1.9e-42 175.6 100 84.0
Ciclev10016738m.g Citrus clementina HOM05D005994 ORTHO05D007322 2.1e-41 172.2 124 70.2
MBI04_g07210_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 2.1e-41 172.2 97 84.5
HPP92_013264 Vanilla planifolia HOM05D005994 ORTHO05D007322 1.0e-40 169.9 99 79.8
Peaxi162Scf00285g00824 Petunia axillaris HOM05D005994 ORTHO05D007322 9.0e-37 156.8 97 80.4
Atru.chr1.2350 Acer truncatum HOM05D005994 ORTHO05D007322 1.8e-32 142.5 100 73.0
MBI04_g36325_MAGBIO Magnolia biondii HOM05D005994 ORTHO05D007322 6.7e-32 140.6 101 72.3
SEGI_25373 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 9.0e-29 130.2 77 79.2
Mapoly0008s0024 Marchantia polymorpha HOM05D005994 ORTHO05D007322 7.2e-26 120.6 92 65.2
Pp3c6_28950 Physcomitrium patens HOM05D005994 ORTHO05D007322 1.6e-25 119.4 92 62.0
SEGI_29999 Sequoiadendron giganteum HOM05D005994 ORTHO05D007322 1.4e-24 116.3 94 58.5
AagrBONN_evm.TU.Sc2ySwM_117.3129 Anthoceros agrestis HOM05D005994 ORTHO05D007322 2.8e-22 108.6 90 58.9
AagrBONN_evm.TU.Sc2ySwM_368.698 Anthoceros agrestis HOM05D005994 ORTHO05D007322 2.8e-22 108.6 90 55.6
CBR_g41406 Chara braunii HOM05D005994 ORTHO05D007322 8.2e-22 107.1 90 55.6
Medtr2g097750 Medicago truncatula HOM05D005994 ORTHO05D007322 9.1e-21 103.6 59 84.7
MCO11G626 Micromonas commoda HOM05D005994 ORTHO05D007322 1.0e-19 100.1 87 57.5
TAR626G0394 Trochodendron aralioides HOM05D005994 ORTHO05D007322 3.8e-19 98.2 51 92.2
Cpa.g.sc3096.1 Carica papaya HOM05D005994 ORTHO05D007322 5.0e-19 97.8 59 76.3
Nn5g27130 Nelumbo nucifera HOM05D005994 ORTHO05D007322 2.5e-18 95.5 52 86.5
HanXRQChr17g0564261 Helianthus annuus HOM05D005994 ORTHO05D007322 6.1e-17 90.9 50 86.0
SMO223G0003 Selaginella moellendorffii HOM05D005994 ORTHO05D007322 6.1e-17 90.9 87 52.9
Nitab4.5_0000607g0040 Nicotiana tabacum HOM05D006135 ORTHO05D007533 1.3e-14 83.2 51 76.5
Dinv10313 Davidia involucrata HOM05D005994 ORTHO05D007322 2.8e-14 82.0 94 52.1
Nitab4.5_0005540g0030 Nicotiana tabacum HOM05D005994 ORTHO05D007322 8.2e-14 80.5 52 75.0
Zm00001eb041720 Zea mays HOM05D005994 ORTHO05D007322 5.3e-13 77.8 55 67.3
TAR627G0003 Trochodendron aralioides HOM05D005994 ORTHO05D007322 8.5e-11 70.5 43 79.1


User provided reference genes

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