Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 2.0e-184 649.0 356 100.0
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 1.3e-45 188.0 331 42.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 1.3e-45 188.0 346 40.8
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-45 188.0 337 44.8
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.1e-44 184.9 328 45.1
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 4.1e-44 183.0 327 44.3
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 5.4e-44 182.6 341 45.7
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 7.1e-44 182.2 366 43.2
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 1.2e-43 181.4 333 43.2
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 6.0e-43 179.1 361 39.3
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.0e-42 178.3 332 41.6
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 3.0e-42 176.8 332 41.0
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 8.6e-42 175.3 347 42.1
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 8.6e-42 175.3 341 45.2
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.1e-41 174.9 342 43.3
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.9e-41 174.1 334 42.8
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 2.5e-41 173.7 345 43.2
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.5e-41 173.7 341 42.5
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.5e-41 173.7 367 40.9
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 7.3e-41 172.2 324 40.7
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 9.6e-41 171.8 355 39.4
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-40 171.4 338 46.2
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.6e-40 171.0 333 42.6
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 4.7e-40 169.5 338 42.9
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 4.7e-40 169.5 338 42.9
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 8.1e-40 168.7 362 40.6
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 1.1e-39 168.3 356 42.1
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 1.8e-39 167.5 398 39.9
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.1e-39 166.8 345 41.2
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 4.0e-39 166.4 338 42.3
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 4.0e-39 166.4 360 43.3
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 5.2e-39 166.0 363 38.3
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 6.8e-39 165.6 348 41.4
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 2.0e-38 164.1 342 43.0
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.0e-38 164.1 361 41.8
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 3.4e-38 163.3 325 41.2
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.4e-38 163.3 326 41.4
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 4.4e-38 162.9 325 41.2
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.4e-38 162.9 322 38.2
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 5.8e-38 162.5 328 42.4
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.8e-38 162.5 363 43.3
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.3e-37 161.4 340 41.8
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.3e-37 161.4 340 40.0
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.7e-37 161.0 325 41.8
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.7e-37 161.0 331 41.1
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 2.2e-37 160.6 365 37.8
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.2e-37 160.6 351 44.4
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 2.9e-37 160.2 324 41.4
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 2.9e-37 160.2 353 43.3
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 2.9e-37 160.2 360 43.3
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.9e-37 160.2 360 39.2
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 3.8e-37 159.8 323 39.0
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-37 159.8 339 41.3
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 3.8e-37 159.8 322 41.3
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 4.9e-37 159.5 323 39.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 4.9e-37 159.5 317 39.4
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 6.4e-37 159.1 321 40.8
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.1e-36 158.3 368 37.5
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.9e-36 157.5 346 40.2
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-36 157.5 326 41.4
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 1.9e-36 157.5 326 41.4
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 1.9e-36 157.5 326 41.4
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.9e-36 157.5 349 40.4
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 1.9e-36 157.5 332 41.0
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 1.9e-36 157.5 345 40.6
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.9e-36 157.5 356 41.0
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.9e-36 157.5 326 38.3
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.4e-36 157.1 336 44.0
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 4.2e-36 156.4 316 42.7
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 9.3e-36 155.2 354 39.0
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 6.0e-35 152.5 344 38.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.0e-35 152.5 340 41.2
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 7.8e-35 152.1 353 41.4
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 7.8e-35 152.1 327 37.0
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 1.0e-34 151.8 368 38.0
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.0e-34 151.8 354 42.4
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 2.3e-34 150.6 370 38.6
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 3.0e-34 150.2 325 38.8
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 3.0e-34 150.2 258 43.4
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 1.1e-33 148.3 341 39.3
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.1e-33 148.3 327 38.2
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.5e-33 147.9 328 38.7
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.5e-33 147.9 368 39.9
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 4.3e-33 146.4 348 37.9
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 4.3e-33 146.4 326 41.1
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 7.3e-33 145.6 351 37.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 4.8e-32 142.9 337 40.9
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 8.1e-32 142.1 347 40.9
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 8.1e-32 142.1 333 39.9
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 8.1e-32 142.1 331 37.2
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 1.1e-31 141.7 334 40.4
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 1.4e-31 141.4 345 38.0
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.8e-31 141.0 313 41.2
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 4.0e-31 139.8 321 42.1
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 6.9e-31 139.0 338 39.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 6.9e-31 139.0 286 45.5
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 2.0e-30 137.5 342 38.3
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 2.0e-30 137.5 346 41.0
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 5.8e-30 136.0 291 37.5
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 1.3e-29 134.8 343 38.8
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 2.9e-29 133.7 316 38.6
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 6.4e-29 132.5 302 43.7
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 1.1e-28 131.7 319 39.5
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.4e-28 131.3 355 38.3
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 1.9e-28 131.0 417 33.8
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.9e-28 131.0 345 35.9
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.4e-28 130.6 223 43.5
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 7.1e-28 129.0 347 37.2
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 2.1e-27 127.5 379 35.9
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 2.7e-27 127.1 322 37.3
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.7e-27 127.1 340 36.2
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 3.5e-27 126.7 293 44.0
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.6e-27 126.3 320 35.6
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 4.6e-27 126.3 340 37.4
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.0e-27 125.9 281 40.6
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.3e-26 124.8 374 35.8
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.9e-26 123.2 291 39.5
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 3.9e-26 123.2 320 36.2
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 3.9e-26 123.2 355 39.2
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 6.7e-26 122.5 335 34.6
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.7e-26 122.1 344 37.5
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 1.9e-25 120.9 257 40.1
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.5e-25 120.6 430 32.1
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.5e-25 120.6 332 33.7
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 4.0e-23 113.2 363 37.7
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 6.9e-23 112.5 330 36.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 1.7e-21 107.8 333 36.0
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.2e-21 107.5 326 35.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.8e-21 106.7 326 35.6
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 2.7e-19 100.5 178 40.4
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.7e-19 100.5 371 36.7
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.5e-19 100.1 240 42.1
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.3e-18 97.4 248 40.7
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 5.1e-18 96.3 151 41.7
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 6.7e-18 95.9 338 36.4
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.9e-17 94.4 347 35.7
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.5e-17 94.0 345 34.8
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.1e-16 90.9 335 33.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 4.8e-16 89.7 228 34.2
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.2e-16 89.4 166 39.8
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 6.2e-16 89.4 319 31.0
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.1e-15 87.0 306 35.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 5.3e-15 86.3 219 38.8
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 1.7e-13 81.3 155 36.8
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 2.1e-11 74.3 151 35.8
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 3.5e-11 73.6 182 34.1
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.0e-10 70.5 342 30.7
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.1e-09 68.6 283 29.7
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.3e-09 66.6 282 33.3
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.3e-08 65.1 176 35.2
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.7e-08 63.5 95 41.1
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 3.7e-08 63.5 341 26.4
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 1.4e-07 61.6 318 33.6
Os01g0922100 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 5.3e-07 59.7 168 31.5
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.6e-06 55.8 312 30.1


User provided reference genes

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