Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 5.2e-145 517.7 261 100.0
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 5.2e-145 517.7 261 100.0
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 2.1e-138 495.7 261 94.3
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 6.2e-138 494.2 261 93.9
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 8.1e-138 493.8 260 93.5
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 8.1e-138 493.8 261 93.1
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.4e-137 493.0 261 93.5
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 1.8e-137 492.7 261 94.6
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 3.1e-137 491.9 261 92.7
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 5.2e-137 491.1 261 93.1
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 94.3
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 6.8e-137 490.7 261 93.5
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 8.9e-137 490.3 261 93.5
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.5e-136 489.6 261 92.7
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 1.5e-136 489.6 260 93.1
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 93.1
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 2.6e-136 488.8 261 92.3
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 93.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 4.4e-136 488.0 261 93.1
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 7.5e-136 487.3 261 92.7
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 9.8e-136 486.9 261 93.1
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.3e-135 486.5 261 91.6
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.3e-135 486.5 260 93.8
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.2e-135 485.7 261 93.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 92.7
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.9e-135 485.3 261 93.1
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 93.1
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 3.7e-135 485.0 261 93.1
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 91.6
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.9e-135 484.6 261 91.6
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 92.3
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.4e-135 484.2 261 91.6
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 92.0
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 91.2
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 8.3e-135 483.8 261 91.6
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.1e-134 483.4 261 92.3
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 1.4e-134 483.0 260 92.3
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-134 482.6 261 91.6
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.9e-134 482.6 258 92.6
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 90.8
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.4e-134 482.3 261 92.7
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.2e-134 481.9 260 91.5
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 92.0
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 3.2e-134 481.9 261 90.4
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.4
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 4.1e-134 481.5 260 91.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 4.1e-134 481.5 261 90.4
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 90.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 5.4e-134 481.1 261 91.6
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 9.2e-134 480.3 261 90.8
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 91.2
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.2e-133 479.9 261 92.0
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 1.6e-133 479.6 261 91.2
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 91.6
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.1e-133 479.2 261 91.6
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 2.7e-133 478.8 261 92.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 91.2
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 91.2
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 91.2
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 3.5e-133 478.4 261 92.0
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.6
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.6
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 4.6e-133 478.0 261 91.2
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 6.0e-133 477.6 261 91.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 6.0e-133 477.6 265 89.4
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.8
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 90.8
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 7.8e-133 477.2 261 91.6
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.0e-132 476.9 269 88.8
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 90.8
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 1.0e-132 476.9 261 91.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.7e-132 476.1 261 90.8
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.4
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.4
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 90.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.3e-132 475.7 261 91.2
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 89.3
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 3.0e-132 475.3 261 90.0
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 6.6e-132 474.2 261 90.0
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 1.1e-131 473.4 259 91.1
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 1.1e-131 473.4 256 91.4
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.5e-131 473.0 261 90.0
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 90.0
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 2.5e-131 472.2 261 90.0
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 4.3e-131 471.5 261 90.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.2e-130 469.9 261 89.3
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.8e-130 468.8 261 89.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 6.2e-130 467.6 285 84.6
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 87.7
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.3e-129 465.7 261 89.3
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 88.9
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 86.6
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 86.6
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 5.8e-128 461.1 264 87.9
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 86.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.3e-127 459.9 260 88.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.4
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.4
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.3e-127 459.9 261 87.7
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 87.0
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.2e-127 459.1 260 88.1
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.2e-127 459.1 260 88.1
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 87.7
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 87.7
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 85.4
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.4
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 87.7
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 85.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 85.4
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 87.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 86.2
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 88.5
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.9e-126 456.1 259 88.0
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.9e-126 456.1 259 88.0
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-126 456.1 277 84.1
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 4.1e-126 454.9 260 87.3
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 86.6
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 4.6e-125 451.4 261 87.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 7.8e-125 450.7 261 85.4
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 6.6e-124 447.6 240 93.3
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 1.1e-123 446.8 261 85.1
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.1e-123 446.8 256 86.3
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 84.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 84.7
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 7.6e-120 434.1 241 89.2
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-119 433.0 276 80.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.2e-119 432.6 241 88.8
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 3.8e-119 431.8 261 83.1
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-116 422.9 261 83.1
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 2.5e-115 419.1 261 76.6
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 7.3e-115 417.5 261 79.7
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 3.6e-114 415.2 261 80.1
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 3.6e-114 415.2 261 80.1
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 8.1e-114 414.1 261 78.9
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 5.8e-112 407.9 266 78.2
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 5.4e-110 401.4 261 80.1
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.1e-110 401.0 261 79.3
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.6e-109 399.8 213 91.5
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 1.9e-107 392.9 222 89.2
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-106 390.2 337 63.2
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 4.8e-106 388.3 309 69.3
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 9.0e-105 384.0 201 92.0
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 1.2e-104 383.6 254 77.6
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 3.8e-103 378.6 240 79.6
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.9e-99 366.3 200 91.0
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 2.1e-98 362.8 195 88.7
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 6.0e-93 344.7 256 73.8
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.3e-91 339.0 260 64.2
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 4.2e-86 322.0 177 87.0
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 4.5e-80 302.0 161 89.4
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 5.9e-72 275.0 229 60.7
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 1.7e-66 256.9 240 58.8
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.6e-61 240.4 135 89.6
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 6.3e-58 228.4 142 83.1
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 8.2e-58 228.0 143 82.5
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.7e-55 220.3 113 92.9
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 1.6e-48 197.2 98 94.9
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 3.6e-45 186.0 111 83.8
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 1.8e-44 183.7 271 47.2
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 1.3e-42 177.6 196 53.1
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.5e-38 163.3 108 76.9
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 1.0e-36 157.9 135 62.2
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.5e-35 154.1 92 82.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 2.6e-35 153.3 195 47.7
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 6.4e-34 148.7 100 79.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.9e-30 137.1 81 85.2
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.0e-28 131.3 92 70.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.0e-23 114.8 111 59.5
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.8e-20 104.0 64 82.8
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 3.6e-13 79.7 81 54.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 1.7e-10 70.9 56 69.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.9e-09 67.4 59 59.3
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.6e-08 64.3 35 85.7
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 2.7e-08 63.5 62 59.7
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 4.6e-08 62.8 85 43.5
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 4.6e-08 62.8 52 65.4
BcaC05g26689 Brassica carinata HOM05D003943 ORTHO05D004753 7.8e-08 62.0 38 73.7
C04p30500 Brassica napus HOM05D002284 ORTHO05D033292 1.7e-07 60.8 34 82.4
BolC4t24585H Brassica oleracea HOM05D002284 ORTHO05D033292 3.3e-06 56.6 34 76.5


User provided reference genes

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