Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 4.8e-106 387.9 202 100.0
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 1.6e-61 240.0 198 60.6
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 4.0e-60 235.3 198 58.6
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 2.6e-59 232.6 200 62.5
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 3.7e-58 228.8 200 59.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 4.9e-58 228.4 199 58.8
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 7.1e-57 224.6 199 56.8
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.1e-56 223.0 199 57.8
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.3e-55 220.3 201 56.2
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.3e-55 220.3 199 57.3
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 5.1e-55 218.4 200 56.0
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.8e-53 212.6 198 55.1
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 6.2e-53 211.5 199 55.3
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.8e-52 209.9 199 54.8
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.3e-52 209.5 198 53.5
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 4.0e-52 208.8 198 55.6
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 6.8e-52 208.0 199 53.3
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 8.9e-52 207.6 200 53.5
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 8.9e-52 207.6 199 52.3
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-51 207.2 200 53.5
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.2e-51 207.2 200 53.5
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.5e-51 206.8 199 54.8
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 4.4e-51 205.3 199 53.3
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 5.8e-51 204.9 199 56.3
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 5.8e-51 204.9 200 51.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 7.6e-51 204.5 198 53.5
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 7.6e-51 204.5 198 52.5
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.2e-50 203.0 200 51.0
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.4e-49 200.3 198 52.5
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 4.1e-49 198.7 199 50.3
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 4.1e-49 198.7 199 51.8
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 9.2e-49 197.6 199 51.8
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 1.2e-48 197.2 199 48.7
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.6e-48 196.8 200 49.5
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.1e-48 196.4 198 51.5
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.5e-48 195.7 199 49.7
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 4.6e-48 195.3 187 55.1
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 7.8e-48 194.5 198 54.5
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.0e-47 194.1 200 51.5
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 1.3e-47 193.7 200 51.0
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.3e-47 193.7 199 50.3
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 8.6e-47 191.0 199 52.8
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 4.3e-46 188.7 194 52.6
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 7.3e-46 188.0 203 47.3
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.3e-42 177.2 200 46.5
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 8.4e-42 174.5 213 45.5
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.4e-41 173.7 199 47.2
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 7.1e-41 171.4 199 43.2
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 7.1e-41 171.4 199 44.7
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.6e-40 170.2 197 46.2
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.9e-39 165.6 199 41.7
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-38 164.1 199 44.2
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 2.5e-38 162.9 199 43.2
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 3.3e-38 162.5 199 41.2
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 5.6e-38 161.8 270 36.7
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 2.1e-37 159.8 193 45.1
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 3.6e-37 159.1 199 43.7
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 5.1e-31 138.7 199 36.7
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 6.6e-31 138.3 200 38.0
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 3.3e-30 136.0 196 38.8
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.6e-30 135.2 197 37.1
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 1.3e-29 134.0 107 66.4
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.6e-29 133.7 198 39.9
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 1.6e-29 133.7 107 62.6
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 2.1e-29 133.3 107 62.6
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 3.6e-29 132.5 182 40.7
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 3.1e-28 129.4 189 40.7
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 4.0e-28 129.0 199 36.7
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 4.0e-28 129.0 199 36.7
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 4.5e-27 125.6 199 35.7
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 4.5e-27 125.6 107 60.7
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 9.9e-27 124.4 198 37.9
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 2.2e-26 123.2 157 42.0
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 6.4e-26 121.7 113 58.4
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 1.4e-25 120.6 148 43.9
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.4e-25 119.8 200 35.5
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.4e-25 119.8 107 57.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 3.2e-25 119.4 200 36.5
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 3.2e-25 119.4 107 57.0
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 9.3e-25 117.9 163 41.7
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 1.2e-24 117.5 107 54.2
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.1e-24 116.7 107 57.0
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.7e-24 116.3 107 57.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 6.0e-24 115.2 107 57.0
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.0e-24 115.2 108 58.3
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 1.3e-23 114.0 200 36.0
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 1.8e-23 113.6 193 35.8
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 2.3e-23 113.2 107 56.1
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 3.9e-23 112.5 199 35.7
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 3.9e-23 112.5 143 44.1
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 8.7e-23 111.3 107 54.2
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 3.3e-22 109.4 92 54.3
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 7.4e-22 108.2 107 53.3
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.1e-21 106.7 107 53.3
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.8e-21 106.3 184 36.4
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.2e-21 105.1 107 52.3
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 2.4e-20 103.2 107 51.4
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 2.0e-19 100.1 107 50.5
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 4.5e-19 99.0 107 49.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 5.8e-19 98.6 86 55.8
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 5.8e-19 98.6 127 46.5
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 7.6e-19 98.2 107 48.6
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 1.3e-18 97.4 86 54.7
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.2e-18 96.7 73 63.0
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 2.9e-18 96.3 107 47.7
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.9e-17 93.6 100 50.0
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 1.9e-17 93.6 107 43.9
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.5e-17 93.2 100 50.0
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 5.5e-17 92.0 100 50.0
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.7e-16 89.7 84 57.1
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 4.6e-16 89.0 120 44.2
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 43.0
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 5.1e-15 85.5 165 33.9
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 8.7e-15 84.7 67 58.2
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 1.1e-14 84.3 137 36.5
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.5e-14 83.2 73 57.5
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 7.4e-14 81.6 91 39.6
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.6e-13 80.5 107 43.9
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 2.8e-13 79.7 80 46.2
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 3.7e-13 79.3 105 40.0
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 4.8e-13 79.0 61 59.0
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 6.2e-13 78.6 80 45.0
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 6.2e-13 78.6 58 62.1
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.1e-12 77.8 62 59.7
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.1e-12 77.8 196 26.5
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.1e-12 77.8 59 59.3
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.8e-12 77.0 57 59.6
HPP92_011366 Vanilla planifolia HOM05D004264 ORTHO05D004680 4.1e-12 75.9 107 41.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 5.3e-12 75.5 58 55.2
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.2e-11 74.3 87 39.1
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.5e-11 73.9 113 38.1
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 2.6e-11 73.2 107 37.4
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 5.8e-11 72.0 59 61.0
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.0e-10 71.2 184 27.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 2.2e-10 70.1 120 38.3
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 2.2e-10 70.1 120 38.3
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 3.8e-10 69.3 84 47.6
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 5.0e-10 68.9 61 55.7
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 8.4e-10 68.2 108 38.9
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.1e-09 67.8 59 57.6
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 48 62.5
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.6e-08 63.9 48 62.5
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.0e-07 61.2 105 36.2
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 2.3e-07 60.1 109 34.9
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 3.9e-07 59.3 108 35.2
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 3.9e-07 59.3 108 35.2
A03p61420 Brassica napus HOM05D004264 ORTHO05D004680 2.5e-06 56.6 100 33.0
C03p54850 Brassica napus HOM05D004264 ORTHO05D004680 9.7e-06 54.7 100 32.0


User provided reference genes

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