Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.3e-97 359.8 193 100.0
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 5.3e-86 321.2 197 87.3
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 5.3e-86 321.2 197 87.3
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 5.8e-85 317.8 191 88.5
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 5.8e-85 317.8 187 89.3
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 1.3e-84 316.6 191 87.4
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.9e-84 315.5 197 86.8
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 2.9e-84 315.5 194 87.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 4.9e-84 314.7 187 87.7
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.2e-83 312.0 190 87.4
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.2e-83 311.6 191 84.3
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.2e-83 311.6 191 84.3
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 7.1e-83 310.8 193 85.5
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.1e-82 309.3 187 86.6
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.1e-82 309.3 190 86.3
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 2.7e-82 308.9 189 85.2
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.3e-81 306.6 190 85.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.3e-81 305.8 185 87.0
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.1e-81 304.7 193 82.9
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 8.7e-81 303.9 191 83.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.5e-80 303.1 191 82.7
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 1.5e-80 303.1 187 85.6
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 3.3e-80 302.0 189 84.1
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 3.3e-80 302.0 190 83.7
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 7.4e-80 300.8 187 85.0
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 9.7e-80 300.4 187 85.0
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.3e-79 300.1 190 83.2
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 1.6e-79 299.7 189 83.1
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 1.6e-79 299.7 187 84.0
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.6e-79 299.7 196 83.2
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.2e-79 299.3 173 89.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.2e-79 299.3 187 83.4
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.8e-79 298.9 190 84.2
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 2.8e-79 298.9 193 82.4
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 3.7e-79 298.5 195 83.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 3.7e-79 298.5 193 81.9
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 3.7e-79 298.5 187 84.5
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 3.7e-79 298.5 185 84.9
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 4.8e-79 298.1 195 83.6
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 4.8e-79 298.1 186 82.3
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 8.2e-79 297.4 189 80.4
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 1.1e-78 297.0 202 77.2
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.4e-78 296.6 185 83.8
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 1.4e-78 296.6 184 84.2
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 1.8e-78 296.2 186 83.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 2.4e-78 295.8 194 80.9
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 3.1e-78 295.4 189 79.4
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 3.1e-78 295.4 180 86.1
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 4.1e-78 295.0 185 82.2
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 5.3e-78 294.7 189 79.4
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 5.3e-78 294.7 191 82.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 6.9e-78 294.3 183 84.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 1.2e-77 293.5 189 78.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.2e-77 293.5 201 79.1
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 1.2e-77 293.5 187 82.9
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.5e-77 293.1 192 81.8
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.5e-77 293.1 188 83.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 4.5e-77 291.6 187 80.7
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 5.9e-77 291.2 195 80.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 7.7e-77 290.8 197 80.2
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.3e-76 290.0 185 82.2
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.3e-76 290.0 196 77.0
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.3e-76 290.0 196 77.0
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 2.2e-76 289.3 196 80.6
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.2e-76 289.3 193 79.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 81.7
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 3.8e-76 288.5 186 81.7
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 5.0e-76 288.1 183 82.5
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 5.0e-76 288.1 187 79.1
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 5.0e-76 288.1 186 81.7
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 8.5e-76 287.3 195 79.5
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 8.5e-76 287.3 187 80.7
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 8.5e-76 287.3 172 86.0
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 1.9e-75 286.2 186 81.7
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.5e-75 285.8 190 76.8
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 186 80.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 77.2
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.2e-75 285.4 189 77.2
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 5.5e-75 284.6 189 77.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.5e-75 284.6 174 84.5
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 5.5e-75 284.6 205 75.1
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 7.2e-75 284.3 189 77.2
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 7.2e-75 284.3 195 79.0
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.2e-74 283.5 187 79.1
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.6e-74 283.1 223 70.9
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 76.2
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 76.2
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 76.2
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 2.1e-74 282.7 189 76.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.7e-74 282.3 193 78.2
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.7e-74 282.3 174 83.9
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 2.7e-74 282.3 191 78.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 3.6e-74 282.0 178 82.0
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 4.6e-74 281.6 185 78.9
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 7.9e-74 280.8 179 79.9
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 1.0e-73 280.4 191 78.5
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.0e-73 280.4 175 84.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 1.0e-73 280.4 185 80.0
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 1.4e-73 280.0 231 69.3
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 1.8e-73 279.6 184 78.8
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.0e-73 278.9 191 78.5
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.9e-73 278.5 195 77.9
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 6.7e-73 277.7 183 79.8
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 8.8e-73 277.3 232 67.7
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 1.1e-72 276.9 179 81.0
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 1.3e-71 273.5 183 79.8
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.1e-70 268.9 236 65.7
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 1.2e-69 266.9 185 76.2
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 4.5e-69 265.0 183 77.6
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 8.5e-68 260.8 155 88.4
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 1.2e-66 256.9 249 58.2
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.4e-65 253.4 159 83.6
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 9.7e-64 247.3 162 80.2
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.8e-63 245.0 190 73.2
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.5e-61 240.0 185 72.4
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 7.7e-61 237.7 171 70.8
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.9e-60 235.7 184 67.4
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 5.0e-60 235.0 182 67.6
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.2e-59 231.9 136 87.5
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.0e-57 227.3 130 90.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-57 226.5 140 82.9
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 8.8e-57 224.2 139 82.0
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.7e-55 218.8 130 86.9
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.2e-52 209.5 182 59.9
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 1.1e-51 207.2 176 58.0
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 3.2e-51 205.7 136 80.1
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.8e-49 199.9 123 85.4
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 3.0e-49 199.1 204 60.3
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 4.0e-49 198.7 140 75.7
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 4.0e-49 198.7 132 81.8
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 5.2e-49 198.4 142 75.4
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 2.0e-45 186.4 110 89.1
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 2.9e-44 182.6 128 73.4
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.2e-39 166.4 115 77.4
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.7e-39 165.6 109 80.7
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.8e-38 163.3 102 81.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 9.1e-38 161.0 99 84.8
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 5.9e-37 158.3 103 83.5
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 4.7e-34 148.7 171 46.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.2e-33 145.2 99 75.8
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 1.5e-32 143.7 89 86.5
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 1.3e-31 140.6 92 79.3
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 4.9e-31 138.7 102 73.5
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.4e-30 136.3 167 44.3
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.6e-29 132.1 82 84.1
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.0e-28 131.0 170 41.8
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 5.6e-27 125.2 102 67.6
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.1e-26 123.2 104 68.3
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.8e-26 122.9 179 38.5
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 8.0e-26 121.3 101 66.3
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 2.3e-25 119.8 75 81.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 5.8e-24 115.2 88 63.6
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.6e-18 97.1 63 76.2
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-16 90.5 60 73.3
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 9.2e-14 81.3 64 71.9
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 4.6e-13 79.0 47 80.9
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.6e-12 74.7 111 50.5
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-11 72.8 113 44.2
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 3.3e-11 72.8 111 45.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.2e-10 70.9 113 43.4
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.6e-10 70.5 113 43.4
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 2.9e-07 59.7 114 42.1
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 4.1e-06 55.8 36 77.8


User provided reference genes

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