Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 2.2e-133 479.2 279 100.0
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 3.4e-78 295.8 237 65.4
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 1.4e-74 283.9 202 70.8
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 1.4e-71 273.9 228 64.5
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 3.4e-70 269.2 202 69.8
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 1.0e-69 267.7 199 70.9
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 8.5e-69 264.6 233 62.2
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 2.5e-68 263.1 203 70.0
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 1.2e-67 260.8 236 61.9
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.7e-67 259.6 202 67.8
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 3.6e-67 259.2 202 67.8
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 7.9e-67 258.1 231 61.0
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 6.7e-66 255.0 204 66.7
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 8.8e-66 254.6 230 61.3
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 1.1e-65 254.2 235 61.7
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 7.4e-65 251.5 230 60.4
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 9.7e-65 251.1 199 62.8
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 1.4e-63 247.3 203 66.0
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 5.3e-63 245.4 202 62.4
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 7.0e-63 245.0 206 62.6
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 9.1e-63 244.6 202 62.4
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.0e-62 243.4 225 57.3
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 4.5e-62 242.3 202 61.9
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 7.7e-62 241.5 199 62.3
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 1.7e-61 240.4 201 62.7
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.7e-61 240.4 202 61.4
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 1.7e-61 240.4 204 63.7
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 2.2e-61 240.0 206 61.7
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 6.5e-61 238.4 211 58.3
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 1.2e-59 234.2 231 57.1
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 1.8e-58 230.3 198 60.6
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.3e-57 226.1 211 59.2
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 4.8e-56 222.2 246 55.7
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 6.3e-56 221.9 209 56.5
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.1e-55 221.1 211 58.3
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.1e-55 221.1 244 53.3
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 1.4e-55 220.7 225 55.1
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 9.1e-55 218.0 229 54.6
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 2.0e-54 216.9 207 57.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 4.5e-54 215.7 202 55.9
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 7.7e-54 214.9 242 51.2
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 7.7e-54 214.9 204 56.9
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 2.9e-53 213.0 232 53.0
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 3.8e-53 212.6 204 57.4
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 3.8e-53 212.6 208 56.7
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 5.0e-53 212.2 200 56.5
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 6.5e-53 211.8 208 57.2
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 1.1e-52 211.1 210 56.2
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 1.5e-52 210.7 211 56.9
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 1.9e-52 210.3 210 56.7
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 2.5e-52 209.9 227 52.4
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 3.2e-52 209.5 205 56.1
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 5.5e-52 208.8 243 49.4
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 9.4e-52 208.0 208 56.7
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 9.4e-52 208.0 227 50.7
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 1.2e-51 207.6 214 53.7
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 1.6e-51 207.2 212 57.1
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 3.6e-51 206.1 227 50.7
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 3.6e-51 206.1 227 50.7
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 4.7e-51 205.7 211 55.0
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 4.7e-51 205.7 202 55.9
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 4.7e-51 205.7 202 55.9
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 1.0e-50 204.5 239 49.0
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.0e-50 204.5 247 49.0
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 1.8e-50 203.8 215 53.5
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 1.5e-49 200.7 212 51.4
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 1.5e-49 200.7 209 53.6
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 2.0e-49 200.3 242 50.0
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.3e-48 197.6 240 49.2
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 2.2e-48 196.8 213 50.7
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 8.3e-48 194.9 213 52.1
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 1.1e-47 194.5 239 48.5
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.8e-47 193.7 228 48.2
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 2.4e-47 193.4 205 52.2
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 3.1e-47 193.0 213 50.7
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 2.0e-46 190.3 211 54.0
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 4.5e-46 189.1 208 52.4
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 2.3e-45 186.8 204 54.4
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 2.5e-44 183.3 220 46.8
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 3.4e-41 172.9 211 46.9
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 1.8e-39 167.2 220 48.6
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 3.1e-39 166.4 133 63.2
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.7e-37 160.6 216 46.3
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 8.6e-37 158.3 216 45.8
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 8.6e-37 158.3 221 43.4
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.5e-33 147.5 143 62.2
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 2.4e-31 140.2 265 34.7
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 2.0e-30 137.1 197 46.7
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 1.0e-29 134.8 266 35.3
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 3.0e-29 133.3 214 43.0
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 1.1e-28 131.3 166 50.6
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 9.5e-28 128.3 313 32.6
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 2.3e-26 123.6 111 57.7
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.2e-25 121.3 111 56.8
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 2.6e-25 120.2 107 55.1
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.9e-24 116.7 123 54.5
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 7.3e-20 102.1 201 33.8
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 3.6e-19 99.8 74 70.3
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 6.2e-19 99.0 96 56.2
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 6.8e-18 95.5 179 36.3
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 1.3e-16 91.3 71 62.0
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 3.4e-09 66.6 94 46.8
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 4.4e-09 66.2 223 27.4
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 7.8e-06 55.5 111 34.2


User provided reference genes

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