Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 1.2e-191 672.9 331 100.0
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 1.4e-150 536.6 335 77.6
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 2.3e-150 535.8 334 77.8
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.4e-149 531.9 328 79.3
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 2.2e-148 529.3 339 75.5
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.4e-148 527.7 327 78.9
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 8.3e-148 527.3 330 79.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.1e-147 526.9 332 78.6
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 3.2e-147 525.4 333 77.2
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 7.1e-147 524.2 330 77.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.7e-146 522.3 331 76.1
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 6.0e-146 521.2 346 74.6
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.0e-145 520.4 327 77.4
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 1.7e-145 519.6 333 76.3
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 5.1e-145 518.1 331 75.2
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 8.6e-145 517.3 330 76.4
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.5e-144 516.5 335 76.4
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.5e-144 516.5 336 75.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 9.5e-144 513.8 328 76.8
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-143 511.5 332 74.4
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-143 511.5 332 74.4
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 6.2e-143 511.1 327 76.8
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-142 510.4 333 73.3
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.8e-142 509.6 332 73.8
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 4.0e-142 508.4 330 74.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.2e-142 508.1 330 76.1
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 1.2e-141 506.9 330 75.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.4e-141 505.0 333 72.7
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 7.6e-141 504.2 326 74.5
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.9e-140 502.3 330 75.2
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 1.4e-139 500.0 329 72.6
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.4e-139 500.0 333 71.8
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.4e-139 499.2 331 74.0
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 3.2e-139 498.8 302 78.5
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 3.2e-139 498.8 330 73.6
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 4.1e-139 498.4 328 72.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 4.1e-139 498.4 331 73.4
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 5.4e-139 498.0 328 74.1
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 7.1e-139 497.7 333 73.9
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 1.2e-138 496.9 329 73.3
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.1e-138 496.1 341 72.1
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.7e-138 495.7 270 84.4
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 4.6e-138 495.0 325 74.8
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 4.6e-138 495.0 325 74.8
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 4.6e-138 495.0 327 72.8
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 4.6e-138 495.0 333 73.3
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 6.0e-138 494.6 272 84.6
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 7.8e-138 494.2 265 86.4
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.8e-138 494.2 331 73.7
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 7.8e-138 494.2 334 74.3
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 1.0e-137 493.8 334 73.4
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.7e-137 493.0 331 72.2
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.7e-137 493.0 335 73.1
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 3.9e-137 491.9 327 74.3
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 1.1e-136 490.3 270 83.7
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.1e-136 490.3 330 73.6
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.5e-136 489.2 317 74.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 3.3e-136 488.8 330 73.6
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 3.3e-136 488.8 330 73.6
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 4.3e-136 488.4 327 73.7
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 4.3e-136 488.4 330 73.6
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 4.3e-136 488.4 326 75.8
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 4.3e-136 488.4 341 71.3
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 5.6e-136 488.0 331 72.5
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 5.6e-136 488.0 296 77.4
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 9.6e-136 487.3 326 75.5
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 9.6e-136 487.3 329 72.0
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.2e-135 486.9 333 71.5
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 1.2e-135 486.9 272 83.8
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.6e-135 486.5 347 70.3
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 2.8e-135 485.7 326 75.2
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 4.7e-135 485.0 334 70.7
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 6.2e-135 484.6 331 73.1
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 6.2e-135 484.6 332 72.9
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 8.1e-135 484.2 337 71.2
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-134 483.8 330 73.6
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 1.1e-134 483.8 304 76.0
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 1.8e-134 483.0 287 78.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 5.2e-134 481.5 327 71.3
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 5.2e-134 481.5 330 72.1
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 6.8e-134 481.1 331 71.6
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 6.8e-134 481.1 330 72.1
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 6.8e-134 481.1 330 72.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.5e-133 479.9 330 72.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 2.0e-133 479.6 261 84.7
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 3.4e-133 478.8 330 73.0
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 4.4e-133 478.4 301 75.7
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 9.9e-133 477.2 297 76.1
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.3e-132 476.9 272 82.4
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.2e-132 476.1 272 82.4
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 2.9e-132 475.7 272 82.0
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 2.9e-132 475.7 333 71.8
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.8e-132 475.3 297 76.1
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 4.9e-132 474.9 325 71.7
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 4.9e-132 474.9 325 71.7
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 4.9e-132 474.9 311 74.3
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.4e-132 474.2 327 70.3
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.4e-131 473.4 265 82.6
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 4.2e-131 471.9 327 71.9
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 9.3e-131 470.7 325 72.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.2e-130 470.3 273 80.6
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.2e-130 470.3 331 70.1
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.6e-130 469.9 333 70.3
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.7e-130 469.2 327 72.2
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 2.7e-130 469.2 331 71.3
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 3.5e-130 468.8 333 70.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 7.8e-130 467.6 262 81.7
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.3e-129 466.8 331 70.1
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.8e-127 459.1 242 88.0
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 3.6e-127 458.8 327 69.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 1.8e-126 456.4 285 76.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 2.0e-125 453.0 286 76.2
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 2.6e-125 452.6 267 79.4
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 2.6e-125 452.6 340 65.6
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.2e-122 443.7 242 84.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 8.7e-121 437.6 233 86.3
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 1.5e-120 436.8 263 78.7
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.9e-120 436.4 270 76.7
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 5.3e-118 428.3 335 65.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 5.8e-117 424.9 333 63.4
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 4.9e-116 421.8 240 85.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 2.1e-114 416.4 216 87.0
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 1.8e-113 413.3 216 85.2
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.6e-112 408.3 218 85.8
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 3.7e-111 405.6 221 84.6
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.1e-110 404.1 216 84.3
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.4e-110 403.7 336 61.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.5e-109 400.2 228 81.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 3.8e-108 395.6 267 70.8
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.9e-106 387.9 334 60.2
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 9.6e-104 380.9 208 84.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 5.9e-101 371.7 216 77.3
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 2.3e-97 359.8 331 56.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 7.4e-96 354.8 305 60.7
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 2.6e-93 346.3 296 61.1
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.8e-86 323.6 245 67.3
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 5.0e-84 315.5 290 54.8
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.5e-77 292.4 154 86.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.7e-77 291.6 160 85.0
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 7.5e-72 275.0 216 65.3
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 7.5e-72 275.0 207 68.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.2e-71 273.5 239 61.5
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 2.7e-69 266.5 209 65.6
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.9e-68 263.1 162 75.9
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.7e-66 255.8 218 62.4
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 9.8e-56 221.5 128 78.9
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 5.6e-51 205.7 145 67.6
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.2e-39 167.2 176 55.1
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 9.6e-19 98.6 110 56.4
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 8.1e-18 95.5 83 57.8
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 2.4e-17 94.0 111 52.3
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 4.4e-16 89.7 112 46.4
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 3.2e-14 83.6 49 71.4


User provided reference genes

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