Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 3.3e-181 638.3 322 100.0
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 9.4e-96 354.4 322 59.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 4.8e-92 342.0 315 60.6
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 6.3e-92 341.7 322 58.7
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 5.3e-91 338.6 322 58.4
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 2.7e-90 336.3 322 58.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 3.5e-90 335.9 318 59.1
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 7.7e-90 334.7 320 58.4
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.2e-89 333.2 318 57.2
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 2.9e-89 332.8 318 58.8
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.0e-89 332.0 333 56.2
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 6.5e-89 331.6 318 57.5
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 6.5e-89 331.6 322 57.5
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.1e-88 330.9 317 56.8
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.5e-88 330.5 322 56.5
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.5e-88 330.5 351 55.3
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.5e-88 330.5 327 56.3
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 3.2e-88 329.3 316 58.5
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 4.2e-88 328.9 351 55.0
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 9.4e-88 327.8 322 58.4
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 8.0e-87 324.7 324 57.1
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.0e-86 322.8 322 58.4
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 3.4e-85 319.3 319 56.7
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.8e-84 316.2 324 54.6
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 6.3e-84 315.1 330 54.5
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 6.3e-84 315.1 316 54.4
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 8.3e-84 314.7 324 57.7
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 1.4e-83 313.9 324 55.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.4e-83 313.2 324 55.2
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 3.1e-83 312.8 316 56.3
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 1.2e-82 310.8 320 54.7
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.7e-81 307.0 324 54.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.7e-81 307.0 313 55.9
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 2.9e-81 306.2 326 55.2
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 5.0e-81 305.4 320 54.1
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.5e-81 305.1 319 53.9
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.2e-80 302.4 328 54.0
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 5.5e-80 302.0 318 55.0
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 9.4e-80 301.2 314 53.5
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 6.1e-79 298.5 314 53.5
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 1.4e-78 297.4 322 53.1
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.8e-78 297.0 314 55.1
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 4.0e-78 295.8 314 51.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 5.2e-78 295.4 322 53.1
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 6.8e-78 295.0 323 57.3
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.2e-77 294.3 315 53.7
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-77 294.3 323 56.3
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 2.0e-77 293.5 325 55.1
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.6e-77 293.1 323 57.0
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 2.6e-77 293.1 341 52.5
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 2.6e-77 293.1 325 52.6
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 4.4e-77 292.4 323 52.6
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 5.7e-77 292.0 324 52.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-76 290.4 324 52.5
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.2e-76 290.0 338 52.7
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 2.8e-76 289.7 323 55.7
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 4.9e-76 288.9 328 50.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 8.3e-76 288.1 314 52.9
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.4e-75 287.3 332 52.7
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 2.4e-75 286.6 316 53.5
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 2.4e-75 286.6 314 52.9
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.4e-75 286.6 332 52.1
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 5.4e-75 285.4 323 52.6
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-74 282.0 312 52.9
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 1.0e-73 281.2 329 51.1
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 1.7e-73 280.4 325 53.5
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.3e-73 280.0 324 52.5
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 3.8e-73 279.3 324 51.2
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 8.6e-73 278.1 323 52.3
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.5e-72 276.6 322 48.8
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 2.5e-72 276.6 322 50.6
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 3.3e-72 276.2 327 49.2
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 4.3e-72 275.8 317 49.8
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.6e-71 272.7 314 49.7
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.1e-71 271.9 330 50.9
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 8.0e-71 271.6 326 49.1
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 8.0e-71 271.6 323 49.5
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.4e-70 270.8 323 49.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 8.9e-70 268.1 313 50.8
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.5e-69 267.3 313 50.8
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 1.5e-69 267.3 303 52.5
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 7.5e-69 265.0 313 50.5
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-68 264.2 313 50.5
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.3e-68 264.2 313 50.5
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.7e-68 263.8 319 51.4
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 3.7e-68 262.7 299 52.2
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 1.6e-66 257.3 316 50.3
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 3.5e-66 256.1 307 49.8
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 6.6e-65 251.9 273 53.1
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 8.6e-65 251.5 322 48.8
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 3.1e-62 243.0 320 48.1
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.9e-60 236.5 313 46.6
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 3.2e-59 233.0 318 45.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.7e-58 229.9 265 55.1
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.3e-57 226.9 327 45.6
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 2.3e-57 226.9 319 46.4
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 3.9e-57 226.1 403 37.2
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.9e-57 226.1 314 45.5
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 9.5e-56 221.5 334 43.7
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 2.8e-55 219.9 320 44.4
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.6e-55 219.5 339 43.7
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 4.7e-55 219.2 320 43.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 1.1e-54 218.0 327 44.6
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.3e-54 216.9 334 43.4
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 8.9e-54 214.9 327 44.3
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 8.9e-54 214.9 247 50.2
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.3e-52 211.1 312 41.7
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.2e-50 204.5 311 43.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 7.8e-50 201.8 351 41.6
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 7.3e-48 195.3 305 43.0
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 9.9e-45 184.9 323 41.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 6.4e-44 182.2 312 43.3
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.9e-43 180.6 325 41.8
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 2.1e-42 177.2 372 38.2
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 4.6e-42 176.0 182 51.1
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 2.3e-41 173.7 298 41.6
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.9e-41 172.9 275 41.8
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.3e-40 169.5 319 40.1
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 2.6e-37 160.2 182 54.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.4e-36 155.2 148 53.4
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 5.1e-33 146.0 211 42.7
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 1.3e-31 141.4 143 53.8
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.1e-31 140.6 177 45.2
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.8e-31 140.2 170 46.5
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.8e-31 140.2 170 46.5
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 1.1e-30 138.3 154 46.8
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 4.0e-30 136.3 253 41.1
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-29 134.8 119 58.8
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 3.4e-29 133.3 165 44.8
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 4.5e-29 132.9 294 37.1
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.5e-29 132.9 164 48.2
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.2e-28 130.6 165 46.1
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 3.8e-28 129.8 112 58.9
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 6.4e-28 129.0 127 60.6
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.4e-27 127.1 170 44.7
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 5.4e-27 125.9 119 54.6
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 9.3e-27 125.2 296 38.2
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.6e-26 124.4 178 46.1
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 2.1e-26 124.0 296 37.8
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.7e-26 123.6 296 37.8
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-25 120.2 108 58.3
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 1.6e-23 114.4 146 45.9
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 9.0e-22 108.6 131 51.1
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 5.8e-21 105.9 133 45.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 9.9e-21 105.1 111 56.8
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.5e-16 91.3 256 33.6
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.1e-14 85.1 101 44.6
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 1.2e-13 81.6 82 56.1
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 7.6e-13 79.0 71 60.6
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 3.8e-12 76.6 192 37.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.1e-11 75.1 103 49.5
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.1e-10 70.9 52 71.2
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 2.5e-08 63.9 57 54.4
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 1.8e-06 57.8 59 50.8


User provided reference genes

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