Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 3.3e-110 403.7 790 100.0
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 7.3e-33 146.7 178 51.7
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 4.4e-30 137.5 182 48.4
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 9.9e-30 136.3 184 48.4
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 9.9e-30 136.3 182 46.7
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 1.9e-28 132.1 124 58.1
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.4e-28 131.7 125 55.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 3.2e-28 131.3 159 50.3
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 9.2e-28 129.8 183 45.9
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.2e-28 129.8 183 45.9
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 6.0e-27 127.1 189 43.9
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 1.3e-26 125.9 181 45.3
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 3.9e-26 124.4 162 46.3
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 6.6e-26 123.6 182 45.1
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 5.6e-25 120.6 182 44.5
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 7.3e-25 120.2 118 55.9
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 9.6e-25 119.8 119 53.8
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.6e-24 119.0 125 52.0
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 2.2e-21 108.6 165 61.2
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 2.9e-21 108.2 151 43.0
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.7e-19 101.7 175 41.7
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 3.5e-19 101.3 94 58.5
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 6.0e-19 100.5 168 36.9
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 1.7e-18 99.0 171 42.1
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 2.3e-18 98.6 171 62.0
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 3.0e-18 98.2 126 44.4
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 5.1e-18 97.4 131 37.4
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 8.7e-18 96.7 148 43.2
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 1.1e-17 96.3 132 44.7
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 2.5e-17 95.1 105 51.4
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 7.3e-17 93.6 113 46.0
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 1.3e-16 92.8 126 39.7
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 8.1e-16 90.1 119 41.2
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 8.1e-16 90.1 170 62.9
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 1.1e-15 89.7 153 39.9
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 1.1e-15 89.7 155 40.0
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.1e-15 89.7 170 59.4
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 1.4e-15 89.4 173 60.7
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 1.4e-15 89.4 132 42.4
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.4e-15 88.6 173 54.9
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 2.4e-15 88.6 178 38.8
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 4.0e-15 87.8 181 38.7
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 9.0e-15 86.7 92 52.2
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 9.0e-15 86.7 118 43.2
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.2e-14 86.3 118 48.3
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 2.0e-14 85.5 179 39.7
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 2.0e-14 85.5 119 42.9
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 3.4e-14 84.7 172 35.5
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 3.4e-14 84.7 160 35.0
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 5.8e-14 84.0 118 41.5
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 5.8e-14 84.0 118 40.7
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 9.9e-14 83.2 166 59.0
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 9.9e-14 83.2 152 35.5
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.3e-13 82.8 158 38.6
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.3e-13 82.8 105 46.7
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.3e-13 82.8 106 46.2
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 1.3e-13 82.8 106 46.2
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.7e-13 82.4 120 40.8
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 1.7e-13 82.4 157 36.9
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 2.2e-13 82.0 119 41.2
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.2e-13 82.0 165 36.4
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 1.4e-12 79.3 121 39.7
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 1.4e-12 79.3 111 45.0
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 2.4e-12 78.6 111 44.1
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 2.4e-12 78.6 118 38.1
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 5.4e-12 77.4 111 43.2
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 7.1e-12 77.0 123 39.0
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 1.2e-11 76.3 124 36.3
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 1.6e-11 75.9 162 55.6
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 1.6e-11 75.9 120 39.2
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 2.1e-11 75.5 162 54.9
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 2.1e-11 75.5 113 38.1
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 3.5e-11 74.7 145 38.6
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 2.3e-10 72.0 161 57.1
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 2.3e-10 72.0 149 59.1
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 1.5e-09 69.3 159 56.0
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 1.5e-09 69.3 159 55.3
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 1.5e-09 69.3 120 36.7
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.5e-09 68.6 118 36.4
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 2.5e-09 68.6 120 34.2
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 3.3e-09 68.2 114 36.0
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 7.4e-09 67.0 159 54.7
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 2.1e-08 65.5 118 34.7
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 2.8e-08 65.1 162 51.9
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 3.1e-07 61.6 56 51.8
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 9.0e-07 60.1 169 31.4
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 1.2e-06 59.7 165 59.4
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 1.5e-06 59.3 61 44.3
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 5.8e-06 57.4 159 53.5
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 9.9e-06 56.6 166 57.2


User provided reference genes

Program Settings