Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2736.8 1383 100.0
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2600.5 1383 93.7
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2594.3 1383 93.6
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2588.9 1383 93.2
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2578.1 1383 92.5
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2572.3 1382 93.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2567.7 1383 92.3
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2567.3 1383 92.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2560.8 1385 92.0
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2560.0 1383 92.0
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2558.1 1384 92.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2556.9 1383 92.5
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2554.2 1385 91.2
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2553.5 1384 91.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2553.1 1383 90.9
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2550.8 1383 91.5
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2548.1 1388 91.6
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2546.9 1385 91.0
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2545.8 1384 91.3
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2543.8 1388 91.5
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2543.8 1383 92.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2542.7 1386 91.1
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2541.9 1384 91.1
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2539.6 1399 90.6
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1398 90.3
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2535.4 1383 90.6
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2535.4 1383 91.2
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2533.8 1385 90.8
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2531.9 1383 90.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2531.1 1384 90.6
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2529.2 1384 90.3
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2528.8 1384 90.5
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2527.3 1384 90.7
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2526.1 1384 90.7
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2525.7 1383 89.8
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2523.0 1383 90.2
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2522.3 1382 90.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2521.9 1383 90.9
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1384 89.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2518.4 1384 90.1
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1383 90.0
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2511.5 1383 90.4
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2510.7 1384 89.5
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2503.8 1383 90.8
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1385 89.3
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1383 89.2
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2502.6 1386 89.3
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2502.6 1384 89.2
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1385 89.2
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2501.9 1384 89.7
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1383 89.3
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2499.5 1385 89.3
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2493.0 1386 88.5
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2488.8 1383 89.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1384 89.0
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2487.6 1394 88.5
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2487.2 1384 88.7
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1385 89.0
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2486.8 1383 89.3
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1383 89.4
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2485.7 1384 89.2
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2484.9 1385 89.0
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2482.6 1383 88.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1383 88.6
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1383 88.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2476.8 1383 88.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2475.7 1383 89.6
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2474.9 1384 88.2
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2470.7 1383 88.4
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1385 87.8
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2468.0 1386 88.1
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2466.8 1384 88.1
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2466.0 1384 87.9
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1335 91.3
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2464.9 1446 84.7
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2460.3 1410 86.7
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2450.2 1384 87.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2448.3 1384 87.7
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2447.2 1383 88.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2446.0 1384 87.9
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2443.7 1384 87.7
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2439.5 1384 87.4
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2438.7 1384 87.4
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2437.9 1384 87.4
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.5
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.5
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2432.9 1384 87.5
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1385 87.6
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1385 87.6
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2429.4 1353 88.5
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2420.2 1384 87.4
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2382.4 1386 85.9
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2381.3 1383 86.0
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2368.2 1385 85.1
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2362.8 1382 84.7
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2362.8 1384 85.1
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2352.8 1409 84.6
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2322.4 1259 91.5
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2319.7 1258 91.9
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2300.4 1331 84.3
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2255.7 1262 88.9
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2228.8 1347 83.4
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2194.9 1341 79.2
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2193.3 1334 80.3
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2185.6 1334 79.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2162.1 1333 78.2
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2161.0 1352 78.0
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2161.0 1352 78.0
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2001.9 1381 75.8
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1999.9 1121 88.0
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1976.1 1109 87.8
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1939.5 1401 74.3
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1885.5 1332 69.1
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1859.7 1349 67.8
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1714.1 913 93.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1704.1 914 91.7
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1650.2 898 91.0
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1529.6 809 93.4
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1526.9 808 93.7
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1161.7 690 84.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1115.9 675 82.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 6.9e-305 1051.2 669 79.7
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 4.5e-296 1021.9 571 86.0
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 4.1e-265 919.1 1199 43.9
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.3e-263 913.3 588 78.6
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.1e-236 824.7 471 86.2
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.2e-235 821.2 472 86.0
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 2.9e-234 816.6 471 85.1
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 3.9e-223 779.6 472 84.3
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 7.4e-206 722.2 400 87.8
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 2.5e-177 627.5 1409 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 4.0e-159 567.0 1469 30.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 6.4e-109 400.2 1279 27.7
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-89 336.3 175 94.9
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.4e-66 259.6 147 85.7
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.6e-59 236.1 123 92.7
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.5e-46 191.4 107 90.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 5.2e-42 177.9 174 59.2
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 4.9e-32 144.8 140 52.1
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.5e-28 132.5 99 69.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.0e-26 125.2 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.5e-20 105.9 61 85.2


User provided reference genes

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