Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.8e-90 335.9 168 100.0
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 6.7e-37 157.9 121 71.9
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.4e-36 155.2 121 68.6
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 9.7e-36 154.1 121 66.9
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 2.8e-35 152.5 121 66.1
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 6.3e-35 151.4 121 66.1
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 8.2e-35 151.0 121 67.8
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.4e-34 150.2 121 64.5
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 2.4e-34 149.4 121 66.9
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.1e-34 149.1 121 64.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 3.1e-34 149.1 121 66.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 4.1e-34 148.7 121 64.5
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.1e-34 148.7 121 65.3
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 4.1e-34 148.7 121 65.3
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 4.1e-34 148.7 121 65.3
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 4.1e-34 148.7 121 66.1
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 5.3e-34 148.3 121 66.1
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 5.3e-34 148.3 121 66.1
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 65.3
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 62.8
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 64.5
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 66.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 65.3
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 7.0e-34 147.9 121 63.6
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 9.1e-34 147.5 121 63.6
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 9.1e-34 147.5 121 66.1
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 65.3
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 65.3
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 63.6
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 66.1
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 62.8
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 1.2e-33 147.1 121 65.3
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 66.1
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 64.5
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 62.8
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 65.3
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 64.5
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.6e-33 146.7 121 62.8
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 2.0e-33 146.4 121 65.3
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.0e-33 146.4 121 65.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 2.0e-33 146.4 121 65.3
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 2.0e-33 146.4 121 64.5
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 2.0e-33 146.4 121 63.6
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.0e-33 146.4 121 64.5
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 3.5e-33 145.6 121 65.3
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 62.0
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 64.5
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 64.5
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 64.5
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 64.5
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 4.5e-33 145.2 121 62.8
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 5.9e-33 144.8 121 65.3
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 7.7e-33 144.4 121 64.5
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.0e-32 144.1 121 63.6
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.0e-32 144.1 121 62.8
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 1.0e-32 144.1 121 63.6
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.0e-32 144.1 121 63.6
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.0e-32 144.1 121 62.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 1.3e-32 143.7 121 63.6
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.3e-32 143.7 121 62.0
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.3e-32 143.7 121 63.6
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 1.7e-32 143.3 121 62.0
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.7e-32 143.3 121 63.6
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.7e-32 143.3 121 62.8
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 2.2e-32 142.9 121 63.6
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.2e-32 142.9 121 62.8
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.9e-32 142.5 121 63.6
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 2.9e-32 142.5 121 62.8
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.9e-32 142.5 121 63.6
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 2.9e-32 142.5 130 61.5
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 2.9e-32 142.5 121 62.8
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 5.0e-32 141.7 121 62.0
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 5.0e-32 141.7 121 63.6
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 5.0e-32 141.7 121 66.1
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 6.5e-32 141.4 121 62.0
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 6.5e-32 141.4 121 60.3
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 6.5e-32 141.4 121 62.8
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 8.5e-32 141.0 121 59.5
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.1e-31 140.6 121 60.3
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 1.5e-31 140.2 121 60.3
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 1.5e-31 140.2 121 64.5
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 1.9e-31 139.8 121 60.3
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.5e-31 139.4 121 61.2
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.2e-31 139.0 121 59.5
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.2e-31 139.0 121 62.0
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 5.5e-31 138.3 121 61.2
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 9.4e-31 137.5 122 62.3
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 9.4e-31 137.5 121 61.2
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 2.1e-30 136.3 121 60.3
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.1e-30 136.3 121 61.2
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 3.6e-30 135.6 121 57.9
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 3.6e-30 135.6 121 57.9
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.0e-29 134.0 121 57.0
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.4e-29 133.7 121 57.0
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 57.9
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.8e-29 133.3 121 57.0
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 57.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.8e-29 133.3 121 57.0
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 57.9
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 57.0
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 57.0
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.8e-29 133.3 121 56.2
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.3e-29 132.9 121 57.0
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 2.3e-29 132.9 121 57.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 2.3e-29 132.9 121 57.0
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 2.3e-29 132.9 121 57.0
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 3.0e-29 132.5 121 57.0
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.0e-29 132.1 107 64.5
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 1.7e-27 126.7 151 51.7
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 4.8e-27 125.2 121 54.5
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 8.3e-27 124.4 116 55.2
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 8.3e-27 124.4 116 55.2
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.2e-25 120.6 121 53.7
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 1.5e-23 113.6 137 46.0
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 4.2e-23 112.1 121 47.9
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 4.2e-23 112.1 121 46.3
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 1.2e-22 110.5 137 44.5
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 2.3e-21 106.3 65 75.4
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 2.6e-20 102.8 61 78.7
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 3.4e-20 102.4 61 82.0
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.7e-19 100.1 126 53.2
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 4.9e-19 98.6 112 46.4
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.1e-18 97.4 104 51.0
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 2.7e-17 92.8 121 41.3
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.3e-13 79.7 106 41.5
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 3.0e-13 79.3 41 82.9
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 5.2e-13 78.6 121 38.8
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 6.8e-13 78.2 113 43.4
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.2e-06 57.4 38 71.1


User provided reference genes

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