Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1723 Punica granatum HOM05D001004 ORTHO05D000653 2.0e-36 155.2 77 100.0
PGR004G0366 Punica granatum HOM05D001004 ORTHO05D000653 1.5e-31 139.0 77 88.3
PGR004G0665 Punica granatum HOM05D001004 ORTHO05D000653 1.8e-29 132.1 77 85.7
PGR004G0546 Punica granatum HOM05D001004 ORTHO05D000653 4.9e-27 124.0 77 81.8
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 6.5e-11 70.5 77 57.1
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 1.9e-10 68.9 77 55.8
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 3.2e-10 68.2 77 55.8
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 3.2e-10 68.2 77 55.8
Duzib114G0743 Durio zibethinus HOM05D001004 ORTHO05D000653 1.6e-09 65.9 77 54.5
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 4.6e-09 64.3 77 53.2
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 6.1e-09 63.9 77 45.5
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 6.1e-09 63.9 77 53.2
TAR636G3448 Trochodendron aralioides HOM05D001004 ORTHO05D000653 6.1e-09 63.9 75 52.0
Dinv44642 Davidia involucrata HOM05D001004 ORTHO05D000653 7.9e-09 63.5 70 57.1
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 1.0e-08 63.2 77 53.2
Zm00001eb208560 Zea mays HOM05D014452 ORTHO05D000653 1.0e-08 63.2 75 45.3
CSS0028717 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 2.3e-08 62.0 76 50.0
Atru.chr4.2206 Acer truncatum HOM05D001004 ORTHO05D000653 3.9e-08 61.2 75 54.7
CSS0007138 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 3.9e-08 61.2 70 55.7
CSS0013364 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 3.9e-08 61.2 77 51.9
COL.COLO4_12161 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.9e-08 61.2 70 55.7
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 6.7e-08 60.5 77 53.2
GSVIVG01018137001 Vitis vinifera HOM05D001004 ORTHO05D000653 6.7e-08 60.5 70 55.7
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.5e-07 59.3 77 48.1
Gorai.009G312600 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.5e-07 59.3 77 51.9
GSVIVG01018139001 Vitis vinifera HOM05D001004 ORTHO05D000653 1.5e-07 59.3 70 54.3
CSS0031008 Camellia sinensis var. sinensis HOM05D001004 ORTHO05D000653 2.0e-07 58.9 75 53.3
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.0e-07 58.9 70 55.7
FAN12G2763 Fragaria x ananassa HOM05D001004 ORTHO05D000653 2.0e-07 58.9 68 54.4
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 2.0e-07 58.9 70 47.1
Nn3g18475 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.0e-07 58.9 70 52.9
AL4G36170 Arabidopsis lyrata HOM05D001004 ORTHO05D000653 2.6e-07 58.5 75 52.0
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.6e-07 58.5 70 51.4
Dinv44644 Davidia involucrata HOM05D001004 ORTHO05D000653 2.6e-07 58.5 75 52.0
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.6e-07 58.5 77 51.9
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 2.6e-07 58.5 70 54.3
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 3.3e-07 58.2 72 44.4
Ciclev10022909m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.3e-07 58.2 70 55.7
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.3e-07 58.2 77 46.8
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 3.3e-07 58.2 70 47.1
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 3.3e-07 58.2 70 52.9
Manes.01G200000 Manihot esculenta HOM05D000077 ORTHO05D000552 4.4e-07 57.8 71 53.5
THA.LOC109117082 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 4.4e-07 57.8 70 51.4
Haze_11313 Corylus avellana HOM05D001004 ORTHO05D000653 5.7e-07 57.4 73 50.7
FAN17G0323 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.7e-07 57.4 70 52.9
FAN17G0556 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.7e-07 57.4 70 52.9
FAN17G2832 Fragaria x ananassa HOM05D001004 ORTHO05D000653 5.7e-07 57.4 70 52.9
Hma1.2p1_0310F.1_g120940 Hydrangea macrophylla HOM05D001004 ORTHO05D000653 5.7e-07 57.4 75 46.7
CiPaw.01G189600 Carya illinoinensis HOM05D001004 ORTHO05D000653 7.4e-07 57.0 77 50.6
Thhalv10017502m.g Eutrema salsugineum HOM05D001004 ORTHO05D000653 7.4e-07 57.0 70 50.0
QL06p015901 Quercus lobata HOM05D001004 ORTHO05D000653 7.4e-07 57.0 76 52.6
THA.LOC104824172 Tarenaya hassleriana HOM05D001004 ORTHO05D000653 7.4e-07 57.0 70 51.4
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 7.4e-07 57.0 70 50.0
CARHR133600 Cardamine hirsuta HOM05D001004 ORTHO05D000653 9.7e-07 56.6 75 48.0
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 9.7e-07 56.6 70 51.4
FAN17G2232 Fragaria x ananassa HOM05D001004 ORTHO05D000653 9.7e-07 56.6 70 52.9
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 9.7e-07 56.6 70 54.3
Prupe.1G032000 Prunus persica HOM05D001004 ORTHO05D000653 9.7e-07 56.6 70 52.9
Sp4g21250 Schrenkiella parvula HOM05D001004 ORTHO05D000653 9.7e-07 56.6 75 50.7
TPR.G9059 Trifolium pratense HOM05D001004 ORTHO05D000653 9.7e-07 56.6 70 47.1
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.3e-06 56.2 77 46.8
Gorai.009G297300 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.3e-06 56.2 69 47.8
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 1.7e-06 55.8 70 51.4
Ciclev10006680m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.7e-06 55.8 70 50.0
FvH4_4g02860 Fragaria vesca HOM05D001004 ORTHO05D000653 1.7e-06 55.8 68 52.9
HanXRQChr13g0424391 Helianthus annuus HOM05D001004 ORTHO05D000653 1.7e-06 55.8 73 50.7
HanXRQChr13g0424431 Helianthus annuus HOM05D001004 ORTHO05D000653 1.7e-06 55.8 73 50.7
BcaB01g03622 Brassica carinata HOM05D001004 ORTHO05D000653 2.2e-06 55.5 75 48.0
COL.COLO4_05579 Corchorus olitorius HOM05D001004 ORTHO05D000653 2.2e-06 55.5 71 45.1
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 2.2e-06 55.5 70 51.4
Nitab4.5_0000302g0080 Nicotiana tabacum HOM05D001004 ORTHO05D000653 2.2e-06 55.5 70 50.0
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 2.2e-06 55.5 73 47.9
Thecc.05G233200 Theobroma cacao HOM05D001004 ORTHO05D000653 2.2e-06 55.5 71 50.7
Gohir.D05G283088 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.8e-06 55.1 69 46.4
Gorai.009G297200 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.8e-06 55.1 69 46.4
Gorai.009G297400 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.8e-06 55.1 69 46.4
HanXRQChr01g0007291 Helianthus annuus HOM05D001004 ORTHO05D000653 2.8e-06 55.1 72 47.2
Medtr5g045470 Medicago truncatula HOM05D001004 ORTHO05D000653 2.8e-06 55.1 70 50.0
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.8e-06 55.1 70 48.6
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 2.8e-06 55.1 70 48.6
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 2.8e-06 55.1 70 51.4
RcHm_v2.0_Chr4g0390841 Rosa chinensis HOM05D001004 ORTHO05D000653 2.8e-06 55.1 70 52.9
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 3.7e-06 54.7 77 48.1
Gohir.A05G281700 Gossypium hirsutum HOM05D001004 ORTHO05D000653 3.7e-06 54.7 69 46.4
TPR.G31261 Trifolium pratense HOM05D001004 ORTHO05D000653 3.7e-06 54.7 77 49.4
TWI09G1179 Tripterygium wilfordii HOM05D001004 ORTHO05D000653 3.7e-06 54.7 72 48.6
CARHR181290 Cardamine hirsuta HOM05D001004 ORTHO05D000653 4.8e-06 54.3 75 46.7
Haze_19482 Corylus avellana HOM05D001004 ORTHO05D000653 4.8e-06 54.3 77 48.1
HanXRQChr01g0014541 Helianthus annuus HOM05D001004 ORTHO05D000653 4.8e-06 54.3 73 45.2
PSO384G3535 Papaver somniferum HOM05D001004 ORTHO05D000653 4.8e-06 54.3 71 46.5
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 6.3e-06 53.9 74 45.9
EL10Ac5g10440 Beta vulgaris HOM05D001004 ORTHO05D000653 6.3e-06 53.9 69 44.9
C03p25690 Brassica napus HOM05D001004 ORTHO05D000653 6.3e-06 53.9 70 50.0
COL.COLO4_12159 Corchorus olitorius HOM05D001004 ORTHO05D000653 6.3e-06 53.9 77 49.4
HanXRQChr01g0014531 Helianthus annuus HOM05D001004 ORTHO05D000653 6.3e-06 53.9 70 50.0
Lj5g0018869 Lotus japonicus HOM05D001004 ORTHO05D000653 6.3e-06 53.9 70 45.7
Manes.05G086390 Manihot esculenta HOM05D001004 ORTHO05D000653 6.3e-06 53.9 70 48.6
Nitab4.5_0006346g0020 Nicotiana tabacum HOM05D001004 ORTHO05D000653 6.3e-06 53.9 75 48.0
AT5G43580 Arabidopsis thaliana HOM05D001004 ORTHO05D000653 8.2e-06 53.5 78 50.0
CiPaw.01G189500 Carya illinoinensis HOM05D001004 ORTHO05D000653 8.2e-06 53.5 70 52.9
COL.COLO4_05581 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.2e-06 53.5 75 42.7
DCAR_027284 Daucus carota HOM05D001004 ORTHO05D000653 8.2e-06 53.5 70 48.6
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 8.2e-06 53.5 70 50.0
Duzib114G0002 Durio zibethinus HOM05D001004 ORTHO05D000653 8.2e-06 53.5 69 44.9
FAN17G0682 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.2e-06 53.5 68 51.5
FAN17G1164 Fragaria x ananassa HOM05D001004 ORTHO05D000653 8.2e-06 53.5 68 51.5
Gohir.A05G281850 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.2e-06 53.5 69 47.8
Gohir.D11G134200 Gossypium hirsutum HOM05D001004 ORTHO05D000653 8.2e-06 53.5 71 49.3
Gorai.007G143500 Gossypium raimondii HOM05D001004 ORTHO05D000653 8.2e-06 53.5 71 49.3
Manes.05G086408 Manihot esculenta HOM05D001004 ORTHO05D000653 8.2e-06 53.5 70 48.6
Medtr1g075380 Medicago truncatula HOM05D001004 ORTHO05D000653 8.2e-06 53.5 77 49.4
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 8.2e-06 53.5 70 47.1


User provided reference genes

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