Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1649 Punica granatum HOM05D006882 ORTHO05D008688 3.9e-57 224.6 112 100.0
CiPaw.03G088500 Carya illinoinensis HOM05D006882 ORTHO05D008688 7.9e-34 147.1 110 63.6
QL02p067584 Quercus lobata HOM05D006882 ORTHO05D008688 4.8e-31 137.9 109 60.6
Dinv34941 Davidia involucrata HOM05D006882 ORTHO05D008688 5.9e-29 131.0 108 61.1
Haze_14430 Corylus avellana HOM05D006882 ORTHO05D008688 1.4e-27 126.3 110 59.1
Eucgr.I02034 Eucalyptus grandis HOM05D006882 ORTHO05D008688 4.2e-27 124.8 121 59.5
MD17G1059700 Malus domestica HOM05D006882 ORTHO05D008688 4.2e-27 124.8 98 64.3
VMungo0464G1672 Vigna mungo HOM05D006882 ORTHO05D008688 1.2e-26 123.2 110 57.3
Cfa007668 Carpinus fangiana HOM05D006882 ORTHO05D008688 2.1e-26 122.5 110 58.2
Sabra17G0083000 Salix brachista HOM05D006882 ORTHO05D008688 1.0e-25 120.2 106 59.4
GSVIVG01032906001 Vitis vinifera HOM05D006882 ORTHO05D008688 3.9e-25 118.2 111 58.6
Prupe.3G254900 Prunus persica HOM05D006882 ORTHO05D008688 6.7e-25 117.5 105 62.9
Potri.017G094200 Populus trichocarpa HOM05D006882 ORTHO05D008688 8.8e-25 117.1 106 56.6
COL.COLO4_04934 Corchorus olitorius HOM05D006882 ORTHO05D008688 3.3e-24 115.2 111 55.9
MD09G1066800 Malus domestica HOM05D006882 ORTHO05D008688 3.3e-24 115.2 93 62.4
Phvul.004G037300 Phaseolus vulgaris HOM05D006882 ORTHO05D008688 4.4e-24 114.8 115 53.9
TPR.G10007 Trifolium pratense HOM05D006882 ORTHO05D008688 1.7e-23 112.8 117 53.0
Glyma.19G030100 Glycine max HOM05D006882 ORTHO05D008688 2.2e-23 112.5 109 53.2
CANSAT64G2010 Cannabis sativa HOM05D006882 ORTHO05D008688 2.8e-23 112.1 112 57.1
Atru.chr8.430 Acer truncatum HOM05D006882 ORTHO05D008688 6.3e-23 110.9 101 59.4
Glyma.13G056500 Glycine max HOM05D006882 ORTHO05D008688 8.2e-23 110.5 103 58.3
Thecc.04G095700 Theobroma cacao HOM05D006882 ORTHO05D008688 8.2e-23 110.5 110 55.5
arahy.Tifrunner.gnm1.ann1.YR6PCG Arachis hypogaea HOM05D006882 ORTHO05D008688 1.1e-22 110.2 107 56.1
Manes.01G096000 Manihot esculenta HOM05D006882 ORTHO05D008688 1.1e-22 110.2 105 58.1
TAR371G1018 Trochodendron aralioides HOM05D006882 ORTHO05D008688 1.4e-22 109.8 99 55.6
arahy.Tifrunner.gnm1.ann1.PJ6ZH1 Arachis hypogaea HOM05D006882 ORTHO05D008688 2.4e-22 109.0 107 55.1
Lj2g0004633 Lotus japonicus HOM05D006882 ORTHO05D008688 2.4e-22 109.0 105 52.4
vmacro05638 Vaccinium macrocarpon HOM05D006882 ORTHO05D008688 4.1e-22 108.2 109 51.4
Duzib187G0261 Durio zibethinus HOM05D006882 ORTHO05D008688 7.0e-22 107.5 110 53.6
Duzib147G0673 Durio zibethinus HOM05D006882 ORTHO05D008688 9.1e-22 107.1 113 54.0
Manes.02G055100 Manihot esculenta HOM05D006882 ORTHO05D008688 1.2e-21 106.7 115 52.2
RcHm_v2.0_Chr2g0165841 Rosa chinensis HOM05D006882 ORTHO05D008688 1.2e-21 106.7 99 56.6
FAN05G2472 Fragaria x ananassa HOM05D006882 ORTHO05D008688 5.9e-21 104.4 99 54.5
Glyma.01G085200 Glycine max HOM05D006882 ORTHO05D008688 5.9e-21 104.4 101 54.5
Lalb_Chr06g0174961 Lupinus albus HOM05D006882 ORTHO05D008688 5.9e-21 104.4 96 55.2
FAN02G1963 Fragaria x ananassa HOM05D006882 ORTHO05D008688 1.0e-20 103.6 99 54.5
FvH4_6g46850 Fragaria vesca HOM05D006882 ORTHO05D008688 2.9e-20 102.1 99 53.5
FAN09G3572 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.8e-20 101.7 91 54.9
FAN14G0989 Fragaria x ananassa HOM05D006882 ORTHO05D008688 3.8e-20 101.7 91 54.9
Potri.004G120200 Populus trichocarpa HOM05D006882 ORTHO05D008688 6.5e-20 100.9 69 71.0
Dinv33828 Davidia involucrata HOM05D006882 ORTHO05D008688 1.9e-19 99.4 83 60.2
Gohir.D11G077000 Gossypium hirsutum HOM05D006882 ORTHO05D008688 1.9e-19 99.4 97 54.6
Gorai.007G082700 Gossypium raimondii HOM05D006882 ORTHO05D008688 2.5e-19 99.0 110 50.9
Hma1.2p1_0481F.1_g162213 Hydrangea macrophylla HOM05D006882 ORTHO05D008688 2.5e-19 99.0 104 51.0
THA.LOC104822332 Tarenaya hassleriana HOM05D006882 ORTHO05D008688 3.2e-19 98.6 107 50.5
Gohir.A11G072700 Gossypium hirsutum HOM05D006882 ORTHO05D008688 5.5e-19 97.8 110 50.0
Duzib264G0735 Durio zibethinus HOM05D006882 ORTHO05D008688 7.2e-19 97.4 99 52.5
Rhsim10G0049600 Rhododendron simsii HOM05D006882 ORTHO05D008688 1.2e-18 96.7 106 51.9
Psat1g068840 Pisum sativum HOM05D006882 ORTHO05D008688 6.1e-18 94.4 114 46.5
Ca_04305_v3 Cicer arietinum L. HOM05D006882 ORTHO05D008688 8.0e-18 94.0 110 52.7
Medtr6g015280 Medicago truncatula HOM05D006882 ORTHO05D008688 8.0e-18 94.0 70 68.6
Cc07_g04230 Coffea canephora HOM05D006882 ORTHO05D008688 2.3e-17 92.4 98 51.0
Ciclev10003470m.g Citrus clementina HOM05D006882 ORTHO05D008688 4.0e-17 91.7 96 50.0
Ciclev10027312m.g Citrus clementina HOM05D006882 ORTHO05D008688 5.2e-17 91.3 70 64.3
Medtr6g015260 Medicago truncatula HOM05D006882 ORTHO05D008688 8.8e-17 90.5 93 57.0
Cpa.g.sc14.176 Carica papaya HOM05D006882 ORTHO05D008688 1.5e-16 89.7 100 52.0
Ciclev10003349m.g Citrus clementina HOM05D006882 ORTHO05D008688 2.0e-16 89.4 70 62.9
TWI60G1503 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 3.3e-16 88.6 107 50.5
Gohir.D09G008650 Gossypium hirsutum HOM05D006882 ORTHO05D008688 4.4e-16 88.2 85 51.8
Oeu062161.1 Olea europaea HOM05D006882 ORTHO05D008688 4.4e-16 88.2 110 42.7
DCAR_025431 Daucus carota HOM05D006882 ORTHO05D008688 1.3e-15 86.7 81 53.1
Gorai.006G010400 Gossypium raimondii HOM05D006882 ORTHO05D008688 1.7e-15 86.3 98 46.9
Sp3g01180 Schrenkiella parvula HOM05D006882 ORTHO05D008688 2.2e-15 85.9 95 50.5
MSTRG.23884 Avicennia marina HOM05D006882 ORTHO05D008688 2.8e-15 85.5 99 48.5
Carub.0003s0123 Capsella rubella HOM05D006882 ORTHO05D008688 2.8e-15 85.5 117 46.2
Ciclev10013137m.g Citrus clementina HOM05D006882 ORTHO05D008688 3.7e-15 85.1 97 49.5
AT3G02120 Arabidopsis thaliana HOM05D006882 ORTHO05D008688 6.3e-15 84.3 106 46.2
Aa31LG5G12650 Aethionema arabicum HOM05D006882 ORTHO05D008688 1.4e-14 83.2 66 62.1
Aqoxy3G00507 Aquilegia oxysepala HOM05D006882 ORTHO05D008688 1.8e-14 82.8 97 47.4
CARHR076080 Cardamine hirsuta HOM05D006882 ORTHO05D008688 1.8e-14 82.8 111 43.2
Hund13139 Selenicereus undatus HOM05D006882 ORTHO05D008688 1.8e-14 82.8 105 47.6
AL3G11350 Arabidopsis lyrata HOM05D006882 ORTHO05D008688 2.4e-14 82.4 112 44.6
Gohir.A09G009600 Gossypium hirsutum HOM05D006882 ORTHO05D008688 2.4e-14 82.4 111 45.9
AUR62038673 Chenopodium quinoa HOM05D006882 ORTHO05D008688 5.3e-14 81.3 56 71.4
Migut.H00624 Erythranthe guttata HOM05D006882 ORTHO05D008688 1.2e-13 80.1 105 46.7
MSTRG.2998 Avicennia marina HOM05D006882 ORTHO05D008688 1.6e-13 79.7 95 49.5
TWI34G0355 Tripterygium wilfordii HOM05D006882 ORTHO05D008688 1.6e-13 79.7 122 45.1
AUR62018188 Chenopodium quinoa HOM05D006882 ORTHO05D008688 4.5e-13 78.2 56 67.9
Sed0003732 Sechium edule HOM05D006882 ORTHO05D008688 4.5e-13 78.2 98 46.9
Ah.12g062710 Amaranthus hybridus HOM05D006882 ORTHO05D008688 7.7e-13 77.4 91 48.4
Peaxi162Scf00166g00424 Petunia axillaris HOM05D006882 ORTHO05D008688 7.7e-13 77.4 87 50.6
PGSC0003DMG400001358 Solanum tuberosum HOM05D006882 ORTHO05D008688 1.3e-12 76.6 86 53.5
ATR0177G043 Amborella trichopoda HOM05D006882 ORTHO05D008688 3.8e-12 75.1 117 40.2
BcaB07g32783 Brassica carinata HOM05D006882 ORTHO05D008688 6.5e-12 74.3 89 49.4
SalBow1G1386 Salvia bowleyana HOM05D006882 ORTHO05D008688 6.5e-12 74.3 82 47.6
SalBow1G4555 Salvia bowleyana HOM05D006882 ORTHO05D008688 6.5e-12 74.3 82 47.6
CsaV3_4G009150 Cucumis sativus L. HOM05D006882 ORTHO05D008688 8.5e-12 73.9 63 58.7
Sc14g0006330 Simmondsia chinensis HOM05D006882 ORTHO05D008688 8.5e-12 73.9 84 46.4
ECA238G0863 Erigeron canadensis HOM05D006882 ORTHO05D008688 1.1e-11 73.6 92 44.6
A09p35030 Brassica napus HOM05D006882 ORTHO05D008688 1.5e-11 73.2 82 48.8
BraA09t39034Z Brassica rapa HOM05D006882 ORTHO05D008688 1.9e-11 72.8 99 44.4
BcaC05g27151 Brassica carinata HOM05D006882 ORTHO05D008688 3.2e-11 72.0 90 46.7
C05p30380 Brassica napus HOM05D006882 ORTHO05D008688 3.2e-11 72.0 90 46.7
BolC5t31777H Brassica oleracea HOM05D006882 ORTHO05D008688 3.2e-11 72.0 90 46.7
Lsat_1_v5_gn_2_90100 Lactuca sativa HOM05D006882 ORTHO05D008688 3.2e-11 72.0 90 46.7
Nn1g08730 Nelumbo nucifera HOM05D006882 ORTHO05D008688 3.2e-11 72.0 59 57.6
Solyc02g088830.4 Solanum lycopersicum HOM05D006882 ORTHO05D008688 7.2e-11 70.9 59 61.0
ClCG07G016320 Citrullus lanatus HOM05D006882 ORTHO05D008688 1.6e-10 69.7 63 55.6
MBI16_g10826_MAGBIO Magnolia biondii HOM05D006882 ORTHO05D008688 2.1e-10 69.3 95 48.4
Nitab4.5_0003841g0040 Nicotiana tabacum HOM05D006882 ORTHO05D008688 3.6e-10 68.6 124 41.9
HanXRQChr07g0199771 Helianthus annuus HOM05D006882 ORTHO05D008688 4.7e-10 68.2 78 48.7
Sopen02g033540 Solanum pennellii HOM05D006882 ORTHO05D008688 6.1e-10 67.8 116 38.8
PSO017G6201 Papaver somniferum HOM05D006882 ORTHO05D008688 1.8e-09 66.2 87 43.7
Peaxi162Scf00298g00055 Petunia axillaris HOM05D006882 ORTHO05D008688 8.8e-09 63.9 63 52.4
arahy.Tifrunner.gnm1.ann1.K9PA59 Arachis hypogaea HOM05D006882 ORTHO05D008688 4.4e-08 61.6 44 65.9
Peaxi162Scf00329g00037 Petunia axillaris HOM05D006882 ORTHO05D008688 7.5e-08 60.8 68 50.0
Peaxi162Scf00254g00028 Petunia axillaris HOM05D006882 ORTHO05D008688 9.8e-08 60.5 54 55.6
CsaV3_5G014380 Cucumis sativus L. HOM05D006882 ORTHO05D008688 3.7e-07 58.5 81 44.4
Peaxi162Scf00025g00208 Petunia axillaris HOM05D006882 ORTHO05D008688 4.8e-07 58.2 68 48.5
CDE04G1794 Ceratophyllum demersum HOM05D006882 ORTHO05D008688 3.1e-06 55.5 34 67.6
Mapoly0103s0008 Marchantia polymorpha HOM05D022139 ORTHO05D008688 7.0e-06 54.3 94 40.4


User provided reference genes

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