Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1594 Punica granatum HOM05D006846 ORTHO05D008473 2.2e-79 298.9 151 100.0
PGR033G0007 Punica granatum HOM05D006846 ORTHO05D008473 2.2e-79 298.9 151 100.0
Prupe.1G108100 Prunus persica HOM05D006846 ORTHO05D008473 4.3e-51 204.9 156 64.7
QL06p041421 Quercus lobata HOM05D006846 ORTHO05D008473 5.3e-49 198.0 147 65.3
Eucgr.H04110 Eucalyptus grandis HOM05D006846 ORTHO05D008473 4.5e-48 194.9 149 65.8
MD13G1143600 Malus domestica HOM05D006846 ORTHO05D008473 2.2e-47 192.6 156 64.1
Duzib212G0339 Durio zibethinus HOM05D006846 ORTHO05D008473 5.5e-46 188.0 120 74.2
Thecc.04G310600 Theobroma cacao HOM05D006846 ORTHO05D008473 5.5e-46 188.0 128 69.5
THA.LOC104821808 Tarenaya hassleriana HOM05D006846 ORTHO05D008473 2.1e-45 186.0 138 64.5
Actinidia18502 Actinidia chinensis HOM05D006846 ORTHO05D008473 3.5e-45 185.3 128 71.1
Lj6A699T67 Lonicera japonica HOM05D006846 ORTHO05D008473 3.5e-45 185.3 121 73.6
FAN07G1325 Fragaria x ananassa HOM05D006846 ORTHO05D008473 4.6e-45 184.9 154 62.3
GSVIVG01017604001 Vitis vinifera HOM05D006846 ORTHO05D008473 6.0e-45 184.5 117 74.4
GSVIVG01017661001 Vitis vinifera HOM05D006846 ORTHO05D008473 6.0e-45 184.5 117 74.4
Migut.H02019 Erythranthe guttata HOM05D006846 ORTHO05D008473 7.9e-45 184.1 141 64.5
FvH4_4g21260 Fragaria vesca HOM05D006846 ORTHO05D008473 1.0e-44 183.7 154 61.7
RcHm_v2.0_Chr4g0426881 Rosa chinensis HOM05D006846 ORTHO05D008473 1.3e-44 183.3 157 59.9
AL1G54740 Arabidopsis lyrata HOM05D006846 ORTHO05D008473 3.0e-44 182.2 129 68.2
MSTRG.14213 Avicennia marina HOM05D006846 ORTHO05D008473 3.9e-44 181.8 146 61.6
CiPaw.01G161800 Carya illinoinensis HOM05D006846 ORTHO05D008473 5.1e-44 181.4 164 56.1
Medtr2g046100 Medicago truncatula HOM05D006846 ORTHO05D008473 5.1e-44 181.4 115 73.0
Rhsim04G0247300 Rhododendron simsii HOM05D006846 ORTHO05D008473 5.1e-44 181.4 145 63.4
Cfa015953 Carpinus fangiana HOM05D006846 ORTHO05D008473 6.7e-44 181.0 156 62.2
Hma1.2p1_0013F.1_g007970 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 8.7e-44 180.6 115 73.9
AT1G48170 Arabidopsis thaliana HOM05D006846 ORTHO05D008473 1.1e-43 180.3 130 66.2
Sp3g23740 Schrenkiella parvula HOM05D006846 ORTHO05D008473 1.1e-43 180.3 138 61.6
Carub.0005s0005 Capsella rubella HOM05D006846 ORTHO05D008473 1.9e-43 179.5 146 59.6
Glyma.15G188800 Glycine max HOM05D006846 ORTHO05D008473 2.5e-43 179.1 117 71.8
Os12g0182800 Oryza sativa ssp. japonica HOM05D006846 ORTHO05D008473 3.3e-43 178.7 142 64.8
Lj6g0016026 Lotus japonicus HOM05D006846 ORTHO05D008473 7.4e-43 177.6 115 71.3
Potri.008G099700 Populus trichocarpa HOM05D006846 ORTHO05D008473 7.4e-43 177.6 138 64.5
Gohir.D09G242700 Gossypium hirsutum HOM05D006846 ORTHO05D008473 9.6e-43 177.2 121 71.9
Gorai.006G266400 Gossypium raimondii HOM05D006846 ORTHO05D008473 9.6e-43 177.2 121 71.9
CARHR290870 Cardamine hirsuta HOM05D006846 ORTHO05D008473 1.3e-42 176.8 112 73.2
Thhalv10012405m.g Eutrema salsugineum HOM05D006846 ORTHO05D008473 1.6e-42 176.4 125 67.2
Manes.03G210800 Manihot esculenta HOM05D006846 ORTHO05D008473 1.6e-42 176.4 114 71.9
CARHR037810 Cardamine hirsuta HOM05D006846 ORTHO05D008473 2.1e-42 176.0 123 69.1
Psat1g017720 Pisum sativum HOM05D006846 ORTHO05D008473 2.1e-42 176.0 139 61.2
Solyc06g053470.3 Solanum lycopersicum HOM05D006846 ORTHO05D008473 2.8e-42 175.6 121 71.1
Sopen06g018550 Solanum pennellii HOM05D006846 ORTHO05D008473 2.8e-42 175.6 121 71.1
vmacro08003 Vaccinium macrocarpon HOM05D006846 ORTHO05D008473 2.8e-42 175.6 175 53.1
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 3.7e-42 175.3 112 71.4
VMungo1309G3101 Vigna mungo HOM05D006846 ORTHO05D008473 4.8e-42 174.9 142 61.3
A06p04640 Brassica napus HOM05D006846 ORTHO05D008473 6.3e-42 174.5 138 58.7
BraA06t23668Z Brassica rapa HOM05D006846 ORTHO05D008473 6.3e-42 174.5 138 58.7
MELO3C003207.2 Cucumis melo HOM05D006846 ORTHO05D008473 6.3e-42 174.5 146 58.9
Nitab4.5_0007474g0050 Nicotiana tabacum HOM05D006846 ORTHO05D008473 6.3e-42 174.5 123 68.3
Phvul.009G219800 Phaseolus vulgaris HOM05D006846 ORTHO05D008473 6.3e-42 174.5 140 60.0
PGSC0003DMG400016299 Solanum tuberosum HOM05D006846 ORTHO05D008473 8.2e-42 174.1 121 70.2
BolC6t35393H Brassica oleracea HOM05D006846 ORTHO05D008473 1.1e-41 173.7 138 58.7
PSO339G5299 Papaver somniferum HOM05D006846 ORTHO05D008473 1.1e-41 173.7 144 61.8
Aa31LG10G5560 Aethionema arabicum HOM05D006846 ORTHO05D008473 1.4e-41 173.3 138 58.0
MBI11_g10320_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 1.4e-41 173.3 112 70.5
SGA_v2.0_scaffold127G34033 Striga asiatica HOM05D006846 ORTHO05D008473 1.4e-41 173.3 146 56.2
BcaC08g43012 Brassica carinata HOM05D006846 ORTHO05D008473 1.8e-41 172.9 138 58.7
C06p02670 Brassica napus HOM05D006846 ORTHO05D008473 1.8e-41 172.9 138 58.7
Nitab4.5_0007368g0030 Nicotiana tabacum HOM05D006846 ORTHO05D008473 2.4e-41 172.6 123 67.5
Peaxi162Scf00579g00010 Petunia axillaris HOM05D006846 ORTHO05D008473 2.4e-41 172.6 116 69.0
Ciclev10007018m.g Citrus clementina HOM05D006846 ORTHO05D008473 3.1e-41 172.2 113 70.8
Sed0003831 Sechium edule HOM05D006846 ORTHO05D008473 4.1e-41 171.8 138 60.9
SEGI_09291 Sequoiadendron giganteum HOM05D006846 ORTHO05D008473 4.1e-41 171.8 145 58.6
BcaB07g33786 Brassica carinata HOM05D006846 ORTHO05D008473 9.0e-41 170.6 112 70.5
ECA233G5003 Erigeron canadensis HOM05D006846 ORTHO05D008473 9.0e-41 170.6 124 63.7
PSO384G1587 Papaver somniferum HOM05D006846 ORTHO05D008473 1.2e-40 170.2 114 69.3
Sabra08G0075400 Salix brachista HOM05D006846 ORTHO05D008473 1.2e-40 170.2 144 61.8
CDE12G0609 Ceratophyllum demersum HOM05D006846 ORTHO05D008473 1.5e-40 169.9 155 55.5
arahy.Tifrunner.gnm1.ann1.BIT0EB Arachis hypogaea HOM05D006846 ORTHO05D008473 2.0e-40 169.5 110 70.0
CAN.G136.4 Capsicum annuum HOM05D006846 ORTHO05D008473 2.0e-40 169.5 118 68.6
CsaV3_4G025810 Cucumis sativus L. HOM05D006846 ORTHO05D008473 2.0e-40 169.5 113 70.8
Zm00001eb359370 Zea mays HOM05D006846 ORTHO05D008473 2.6e-40 169.1 131 64.9
Ca_02363_v3 Cicer arietinum L. HOM05D006846 ORTHO05D008473 4.5e-40 168.3 115 69.6
Hund16859 Selenicereus undatus HOM05D006846 ORTHO05D008473 5.9e-40 167.9 117 65.8
Sc23g0000700 Simmondsia chinensis HOM05D006846 ORTHO05D008473 7.6e-40 167.5 117 65.8
Aqoxy1G00358 Aquilegia oxysepala HOM05D006846 ORTHO05D008473 1.0e-39 167.2 117 70.9
FAN12G0803 Fragaria x ananassa HOM05D006846 ORTHO05D008473 1.0e-39 167.2 179 52.5
Dinv29523 Davidia involucrata HOM05D006846 ORTHO05D008473 1.3e-39 166.8 121 66.9
AUR62019042 Chenopodium quinoa HOM05D006846 ORTHO05D008473 2.2e-39 166.0 123 61.0
Lalb_Chr07g0181811 Lupinus albus HOM05D006846 ORTHO05D008473 2.9e-39 165.6 115 66.1
SGA_v2.0_scaffold127G34034 Striga asiatica HOM05D006846 ORTHO05D008473 5.0e-39 164.9 151 53.6
AUR62027881 Chenopodium quinoa HOM05D006846 ORTHO05D008473 6.5e-39 164.5 124 60.5
SGA_v2.0_scaffold64G22040 Striga asiatica HOM05D006846 ORTHO05D008473 1.4e-38 163.3 167 49.1
CANSAT01G2167 Cannabis sativa HOM05D006846 ORTHO05D008473 4.2e-38 161.8 144 55.6
EL10Ac1g01060 Beta vulgaris HOM05D006846 ORTHO05D008473 3.6e-37 158.7 124 61.3
HanXRQChr09g0246471 Helianthus annuus HOM05D006846 ORTHO05D008473 3.6e-37 158.7 114 62.3
MD16G1146600 Malus domestica HOM05D006846 ORTHO05D008473 1.3e-34 150.2 147 54.4
TWI73G0996 Tripterygium wilfordii HOM05D006846 ORTHO05D008473 3.7e-34 148.7 117 62.4
TPR.G27493 Trifolium pratense HOM05D006846 ORTHO05D008473 8.2e-34 147.5 129 55.8
unitig_744.g24645 Utricularia gibba HOM05D006846 ORTHO05D008473 2.4e-33 146.0 140 55.0
Haze_00535 Corylus avellana HOM05D006846 ORTHO05D008473 1.5e-32 143.3 156 51.9
QL11p040346 Quercus lobata HOM05D006846 ORTHO05D008473 4.5e-32 141.7 147 53.1
Cc03_g00240 Coffea canephora HOM05D006846 ORTHO05D008473 7.7e-32 141.0 86 74.4
SalBow8G5328 Salvia bowleyana HOM05D006846 ORTHO05D008473 1.7e-31 139.8 129 56.6
COL.COLO4_34545 Corchorus olitorius HOM05D005582 ORTHO05D007028 3.8e-31 138.7 89 73.0
Haze_00536 Corylus avellana HOM05D006846 ORTHO05D008473 1.9e-30 136.3 156 50.0
Dinv29521 Davidia involucrata HOM05D006846 ORTHO05D008473 4.2e-30 135.2 102 63.7
Nn4g26496 Nelumbo nucifera HOM05D006846 ORTHO05D008473 6.1e-29 131.3 131 53.4
Gohir.A09G242000 Gossypium hirsutum HOM05D006846 ORTHO05D008473 1.5e-27 126.7 143 51.7
HPP92_004479 Vanilla planifolia HOM05D006846 ORTHO05D008473 4.4e-27 125.2 87 67.8
Pp3c9_17660 Physcomitrium patens HOM05D006846 ORTHO05D008473 9.7e-27 124.0 121 48.8
TAR365G0638 Trochodendron aralioides HOM05D006846 ORTHO05D008473 9.7e-27 124.0 74 78.4
Mapoly0021s0070 Marchantia polymorpha HOM05D006846 ORTHO05D008473 2.8e-26 122.5 123 47.2
arahy.Tifrunner.gnm1.ann1.EYUN0W Arachis hypogaea HOM05D000385 ORTHO05D000269 2.4e-25 119.4 126 47.6
Lsat_1_v5_gn_6_71441 Lactuca sativa HOM05D006846 ORTHO05D008473 4.1e-25 118.6 122 47.5
MBI18_g09611_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 5.9e-24 114.8 99 56.6
ATR0693G432 Amborella trichopoda HOM05D006846 ORTHO05D008473 1.2e-21 107.1 73 67.1
CSS0050245 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 2.1e-21 106.3 108 55.6
CSS0047848 Camellia sinensis var. sinensis HOM05D006846 ORTHO05D008473 1.6e-16 90.1 53 81.1
Glyma.09G078800 Glycine max HOM05D006846 ORTHO05D008473 2.0e-16 89.7 60 71.7
ClCG04G007450 Citrullus lanatus HOM05D006846 ORTHO05D008473 1.3e-15 87.0 70 62.9
Hma1.2p1_0013F.1_g007960 Hydrangea macrophylla HOM05D006846 ORTHO05D008473 5.0e-15 85.1 53 69.8
Cpa.g.sc146.38 Carica papaya HOM05D006846 ORTHO05D008473 1.9e-14 83.2 83 51.8
Zm00001eb158200 Zea mays HOM05D006846 ORTHO05D008473 5.5e-14 81.6 67 56.7
MBI19_g16347_MAGBIO Magnolia biondii HOM05D006846 ORTHO05D008473 4.0e-12 75.5 94 47.9
Cre04.g216300 Chlamydomonas reinhardtii HOM05D006846 ORTHO05D008473 5.2e-12 75.1 139 35.3
AagrBONN_evm.TU.Sc2ySwM_117.777 Anthoceros agrestis HOM05D006846 ORTHO05D008473 2.0e-08 63.2 67 43.3
Dinv18032 Davidia involucrata HOM05D006846 ORTHO05D008473 2.7e-08 62.8 76 50.0
Thecc.01G162200 Theobroma cacao HOM05D006846 ORTHO05D008473 1.5e-06 57.0 73 47.9


User provided reference genes

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