Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1538 Punica granatum HOM05D007171 ORTHO05D008946 1.7e-128 462.6 229 100.0
Actinidia11236 Actinidia chinensis HOM05D007171 ORTHO05D008946 1.1e-71 273.9 227 59.0
Eucgr.K03186 Eucalyptus grandis HOM05D007171 ORTHO05D008946 5.7e-71 271.6 232 57.3
Manes.09G071900 Manihot esculenta HOM05D007171 ORTHO05D008946 3.7e-70 268.9 204 63.2
CiPaw.10G139300 Carya illinoinensis HOM05D007171 ORTHO05D008946 6.3e-70 268.1 203 61.1
QL07p045896 Quercus lobata HOM05D007171 ORTHO05D008946 5.9e-68 261.5 230 58.7
GSVIVG01025575001 Vitis vinifera HOM05D007171 ORTHO05D008946 3.8e-67 258.8 206 59.2
CSS0013206 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.7e-65 252.7 199 60.8
CSS0034218 Camellia sinensis var. sinensis HOM05D007171 ORTHO05D008946 2.7e-65 252.7 199 60.8
MD04G1110400 Malus domestica HOM05D007171 ORTHO05D008946 5.2e-64 248.4 240 52.9
Nn2g10565 Nelumbo nucifera HOM05D007171 ORTHO05D008946 3.4e-63 245.7 229 52.4
Ciclev10012666m.g Citrus clementina HOM05D007171 ORTHO05D008946 7.5e-63 244.6 231 52.4
Dinv37232 Davidia involucrata HOM05D007171 ORTHO05D008946 4.8e-62 241.9 233 51.9
Cfa017468 Carpinus fangiana HOM05D007171 ORTHO05D008946 6.3e-62 241.5 230 52.2
Hma1.2p1_0350F.1_g132480 Hydrangea macrophylla HOM05D007171 ORTHO05D008946 1.1e-61 240.7 228 53.1
Lj2C103T12 Lonicera japonica HOM05D007171 ORTHO05D008946 2.4e-61 239.6 230 50.9
RcHm_v2.0_Chr3g0468061 Rosa chinensis HOM05D007171 ORTHO05D008946 5.3e-61 238.4 241 51.0
Sed0019751 Sechium edule HOM05D007171 ORTHO05D008946 5.0e-59 231.9 223 52.5
TWI74G0166 Tripterygium wilfordii HOM05D007171 ORTHO05D008946 1.1e-58 230.7 209 54.5
Prupe.6G245500 Prunus persica HOM05D007171 ORTHO05D008946 1.5e-58 230.3 258 46.1
CANSAT80G0026 Cannabis sativa HOM05D007171 ORTHO05D008946 1.2e-57 227.3 201 55.7
Atru.chr8.2508 Acer truncatum HOM05D007171 ORTHO05D008946 1.0e-56 224.2 235 48.1
Cc06_g03280 Coffea canephora HOM05D007171 ORTHO05D008946 2.3e-56 223.0 193 56.0
Gohir.D13G097200 Gossypium hirsutum HOM05D007171 ORTHO05D008946 2.3e-56 223.0 211 53.6
Gorai.001G248800 Gossypium raimondii HOM05D007171 ORTHO05D008946 2.3e-56 223.0 211 53.6
ATR0594G074 Amborella trichopoda HOM05D007171 ORTHO05D008946 2.6e-55 219.5 178 55.1
Gohir.A13G095390 Gossypium hirsutum HOM05D007171 ORTHO05D008946 3.4e-55 219.2 211 52.1
Lalb_Chr21g0317461 Lupinus albus HOM05D007171 ORTHO05D008946 3.4e-55 219.2 195 56.4
MELO3C003081.2 Cucumis melo HOM05D007171 ORTHO05D008946 9.8e-55 217.6 203 54.7
FvH4_6g14830 Fragaria vesca HOM05D007171 ORTHO05D008946 9.8e-55 217.6 244 49.2
Migut.L01644 Erythranthe guttata HOM05D007171 ORTHO05D008946 2.8e-54 216.1 226 50.0
FAN14G2678 Fragaria x ananassa HOM05D007171 ORTHO05D008946 8.3e-54 214.5 244 48.8
HanXRQChr13g0399321 Helianthus annuus HOM05D007171 ORTHO05D008946 8.3e-54 214.5 229 50.7
THA.LOC104826994 Tarenaya hassleriana HOM05D007171 ORTHO05D008946 1.4e-53 213.8 208 51.9
Thecc.05G049600 Theobroma cacao HOM05D007171 ORTHO05D008946 1.6e-52 210.3 232 47.0
SHI12609 Sapria himalayana HOM05D007171 ORTHO05D008946 3.5e-52 209.1 178 55.1
MSTRG.10286 Avicennia marina HOM05D007171 ORTHO05D008946 4.5e-52 208.8 228 48.2
Nitab4.5_0002774g0040 Nicotiana tabacum HOM05D007171 ORTHO05D008946 7.7e-52 208.0 196 51.5
VMungo0464G1509 Vigna mungo HOM05D007171 ORTHO05D008946 7.7e-52 208.0 199 53.3
FAN05G0875 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.3e-51 207.2 243 47.3
FAN09G2349 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.3e-51 207.2 244 47.5
arahy.Tifrunner.gnm1.ann1.J666ZG Arachis hypogaea HOM05D007171 ORTHO05D008946 2.9e-51 206.1 203 51.7
CsaV3_4G024490 Cucumis sativus L. HOM05D007171 ORTHO05D008946 3.8e-51 205.7 203 52.2
Ca_04434_v3 Cicer arietinum L. HOM05D007171 ORTHO05D008946 8.6e-51 204.5 197 50.3
FAN02G0958 Fragaria x ananassa HOM05D007171 ORTHO05D008946 1.1e-50 204.1 244 46.7
Nitab4.5_0000643g0130 Nicotiana tabacum HOM05D007171 ORTHO05D008946 2.5e-50 203.0 198 51.0
Peaxi162Scf00039g00419 Petunia axillaris HOM05D007171 ORTHO05D008946 2.5e-50 203.0 196 50.0
Phvul.004G054300 Phaseolus vulgaris HOM05D007171 ORTHO05D008946 2.5e-50 203.0 199 49.2
Glyma.19G071700 Glycine max HOM05D007171 ORTHO05D008946 5.5e-50 201.8 200 51.5
arahy.Tifrunner.gnm1.ann1.56UX32 Arachis hypogaea HOM05D007171 ORTHO05D008946 7.2e-50 201.4 203 50.2
Medtr6g023885 Medicago truncatula HOM05D007171 ORTHO05D008946 7.2e-50 201.4 196 50.0
SalBow4G3339 Salvia bowleyana HOM05D007171 ORTHO05D008946 1.6e-49 200.3 227 48.0
EL10Ac7g17274 Beta vulgaris HOM05D007171 ORTHO05D008946 4.7e-49 198.7 221 44.8
Sopen09g001790 Solanum pennellii HOM05D007171 ORTHO05D008946 4.7e-49 198.7 196 50.0
Solyc09g005930.4 Solanum lycopersicum HOM05D007171 ORTHO05D008946 8.0e-49 198.0 196 50.0
Lsat_1_v5_gn_6_33220 Lactuca sativa HOM05D007171 ORTHO05D008946 1.4e-48 197.2 217 48.4
Glyma.05G078000 Glycine max HOM05D007171 ORTHO05D008946 3.0e-48 196.1 200 50.0
Haze_20689 Corylus avellana HOM05D007171 ORTHO05D008946 5.2e-48 195.3 171 55.0
AUR62036841 Chenopodium quinoa HOM05D007171 ORTHO05D008946 6.8e-48 194.9 222 44.6
PGSC0003DMG400023935 Solanum tuberosum HOM05D007171 ORTHO05D008946 1.5e-47 193.7 196 48.5
AUR62042289 Chenopodium quinoa HOM05D007171 ORTHO05D008946 3.4e-47 192.6 220 44.5
MBI14_g46135_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 7.5e-47 191.4 299 37.8
Lj2g0011641 Lotus japonicus HOM05D007171 ORTHO05D008946 2.8e-46 189.5 197 49.2
CAN.G350.19 Capsicum annuum HOM05D007171 ORTHO05D008946 1.4e-45 187.2 187 48.1
ECA233G5714 Erigeron canadensis HOM05D007171 ORTHO05D008946 2.4e-45 186.4 165 56.4
CDE04G2331 Ceratophyllum demersum HOM05D007171 ORTHO05D008946 3.2e-45 186.0 189 47.6
TPR.G16189 Trifolium pratense HOM05D007171 ORTHO05D008946 5.4e-45 185.3 194 46.9
Duzib128G0424 Durio zibethinus HOM05D007171 ORTHO05D008946 3.5e-44 182.6 232 45.3
SGA_v2.0_scaffold94G28650 Striga asiatica HOM05D007171 ORTHO05D008946 3.5e-44 182.6 175 51.4
DCAR_017747 Daucus carota HOM05D007171 ORTHO05D008946 7.8e-44 181.4 229 41.9
Aa31LG1G22150 Aethionema arabicum HOM05D007171 ORTHO05D008946 3.3e-42 176.0 246 41.1
BcaC06g32009 Brassica carinata HOM05D007171 ORTHO05D008946 3.3e-42 176.0 214 45.8
PSO339G0903 Papaver somniferum HOM05D007171 ORTHO05D008946 7.3e-42 174.9 185 47.6
unitig_0.g696 Utricularia gibba HOM05D007171 ORTHO05D008946 7.3e-42 174.9 229 41.9
Thhalv10014568m.g Eutrema salsugineum HOM05D007171 ORTHO05D008946 9.5e-42 174.5 209 44.5
Os03g0282900 Oryza sativa ssp. japonica HOM05D007171 ORTHO05D008946 9.5e-42 174.5 207 44.0
PSO384G3756 Papaver somniferum HOM05D007171 ORTHO05D008946 1.2e-41 174.1 185 47.6
Zm00001eb397290 Zea mays HOM05D007171 ORTHO05D008946 1.2e-41 174.1 204 41.7
Potri.006G215800 Populus trichocarpa HOM05D007171 ORTHO05D008946 3.6e-41 172.6 258 39.9
BcaNung03278 Brassica carinata HOM05D007171 ORTHO05D008946 1.0e-40 171.0 236 41.9
A10p32970 Brassica napus HOM05D007171 ORTHO05D008946 2.3e-40 169.9 235 42.6
BraA10t45334Z Brassica rapa HOM05D007171 ORTHO05D008946 2.3e-40 169.9 235 42.6
C09p73940 Brassica napus HOM05D007171 ORTHO05D008946 8.9e-40 167.9 237 42.2
BolC9t60129H Brassica oleracea HOM05D007171 ORTHO05D008946 8.9e-40 167.9 239 41.4
AT5G02740 Arabidopsis thaliana HOM05D007171 ORTHO05D008946 5.8e-39 165.2 210 42.9
AL6G11990 Arabidopsis lyrata HOM05D007171 ORTHO05D008946 3.7e-38 162.5 207 43.5
Carub.0006s0150 Capsella rubella HOM05D007171 ORTHO05D008946 8.3e-38 161.4 201 43.8
Sabra06G0166400 Salix brachista HOM05D007171 ORTHO05D008946 8.3e-38 161.4 195 45.6
SEGI_11390 Sequoiadendron giganteum HOM05D007171 ORTHO05D008946 1.2e-36 157.5 193 42.5
Sc07g0006190 Simmondsia chinensis HOM05D007171 ORTHO05D008946 2.3e-35 153.3 146 47.9
vmacro20092 Vaccinium macrocarpon HOM05D007171 ORTHO05D008946 6.6e-27 125.2 128 44.5
COL.COLO4_10310 Corchorus olitorius HOM05D007171 ORTHO05D008946 1.2e-23 114.4 211 35.5
Psat1g085840 Pisum sativum HOM05D007171 ORTHO05D008946 3.4e-23 112.8 117 45.3
HPP92_001690 Vanilla planifolia HOM05D007171 ORTHO05D008946 5.8e-23 112.1 122 41.8
Oeu035685.1 Olea europaea HOM05D007171 ORTHO05D008946 1.9e-21 107.1 82 56.1
ClCG04G008670 Citrullus lanatus HOM05D007171 ORTHO05D008946 2.3e-19 100.1 186 35.5
TAR383G0190 Trochodendron aralioides HOM05D007171 ORTHO05D008946 3.9e-19 99.4 78 59.0
MBI14_g16337_MAGBIO Magnolia biondii HOM05D007171 ORTHO05D008946 2.5e-18 96.7 61 72.1
Aqoxy2G01927 Aquilegia oxysepala HOM05D007171 ORTHO05D008946 3.3e-18 96.3 119 42.0
Ah.08g212070 Amaranthus hybridus HOM05D007171 ORTHO05D008946 2.8e-17 93.2 78 52.6
Ah.08g212060 Amaranthus hybridus HOM05D007171 ORTHO05D008946 8.9e-16 88.2 86 44.2
SMO358G0627 Selaginella moellendorffii HOM05D007171 ORTHO05D008946 8.9e-16 88.2 186 30.1
CARHR210640 Cardamine hirsuta HOM05D007171 ORTHO05D008946 1.0e-11 74.7 137 32.8
HanXRQChr13g0399281 Helianthus annuus HOM05D007171 ORTHO05D008946 3.0e-11 73.2 88 47.7
Mapoly0061s0086 Marchantia polymorpha HOM05D007171 ORTHO05D008946 1.6e-09 67.4 200 26.0
Pp3c16_16690 Physcomitrium patens HOM05D007171 ORTHO05D008946 3.6e-09 66.2 190 27.9


User provided reference genes

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