Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.9e-155 550.8 278 100.0
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 9.0e-103 377.5 295 68.1
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 1.2e-102 377.1 284 70.4
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 4.2e-100 368.6 272 72.8
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 6.0e-99 364.8 270 73.0
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 7.8e-99 364.4 282 69.9
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 7.8e-99 364.4 284 69.0
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 1.3e-98 363.6 277 69.7
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 3.9e-98 362.1 274 67.9
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.9e-97 359.8 236 76.7
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 4.3e-97 358.6 236 76.3
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 5.6e-97 358.2 218 84.9
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 5.6e-97 358.2 273 69.2
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.6e-97 358.2 236 75.8
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 5.6e-97 358.2 222 80.6
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 7.3e-97 357.8 275 69.5
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 9.6e-97 357.5 284 68.0
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 2.8e-96 355.9 287 67.2
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.8e-96 355.9 272 69.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 3.6e-96 355.5 286 67.8
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 3.6e-96 355.5 272 69.5
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 4.8e-96 355.1 255 72.9
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 4.8e-96 355.1 224 79.9
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 4.8e-96 355.1 274 67.5
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 6.2e-96 354.8 219 80.8
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 6.2e-96 354.8 286 66.8
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.4e-95 353.6 276 69.2
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 1.8e-95 353.2 264 69.7
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 2.4e-95 352.8 286 66.4
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 6.9e-95 351.3 234 76.5
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 6.9e-95 351.3 229 79.9
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 9.0e-95 350.9 286 66.1
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 9.0e-95 350.9 219 79.5
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 2.0e-94 349.7 271 67.9
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 2.6e-94 349.4 250 71.6
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 3.4e-94 349.0 273 68.5
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 3.4e-94 349.0 278 67.3
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 7.6e-94 347.8 228 78.5
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 3.8e-93 345.5 227 77.5
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 1.4e-92 343.6 276 65.2
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.4e-92 343.6 282 64.9
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 4.2e-92 342.0 219 79.9
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 5.4e-92 341.7 235 76.2
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 7.1e-92 341.3 219 79.0
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 7.1e-92 341.3 220 81.4
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 9.3e-92 340.9 224 78.6
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 1.2e-91 340.5 233 75.1
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 1.6e-91 340.1 260 69.2
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 1.6e-91 340.1 220 75.5
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 2.1e-91 339.7 237 74.7
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 2.7e-91 339.3 282 66.3
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.6e-91 338.6 221 78.3
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 6.0e-91 338.2 258 68.2
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 7.9e-91 337.8 290 63.4
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.8e-90 336.7 259 68.3
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.8e-90 336.7 224 78.1
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 3.0e-90 335.9 240 71.2
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 6.7e-90 334.7 239 72.4
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 6.7e-90 334.7 253 68.8
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 1.5e-89 333.6 213 77.0
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.5e-89 333.6 229 76.4
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 2.5e-89 332.8 267 65.5
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 3.3e-89 332.4 222 74.3
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 5.6e-89 331.6 224 74.1
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 7.4e-89 331.3 284 63.4
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-88 330.5 257 70.0
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.3e-88 330.5 257 70.0
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 1.6e-88 330.1 226 73.9
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 2.1e-88 329.7 226 73.9
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 2.1e-88 329.7 236 72.9
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 2.8e-88 329.3 200 82.0
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 4.8e-88 328.6 226 73.5
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 4.8e-88 328.6 226 73.5
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 4.8e-88 328.6 226 73.5
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 8.1e-88 327.8 239 72.4
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 1.8e-87 326.6 246 69.5
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 4.0e-87 325.5 220 75.0
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.6e-86 322.8 183 82.5
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 4.5e-86 322.0 266 67.3
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 2.2e-85 319.7 228 70.6
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 6.4e-85 318.2 183 81.4
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.9e-84 316.6 212 73.1
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 4.2e-84 315.5 199 82.4
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 7.1e-84 314.7 207 73.4
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 1.6e-83 313.5 297 59.6
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 6.0e-83 311.6 238 69.7
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 8.7e-82 307.8 235 66.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.3e-80 303.9 173 85.0
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 6.2e-80 301.6 170 87.1
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 2.2e-77 293.1 221 68.3
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 1.1e-76 290.8 371 48.5
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 3.2e-76 289.3 187 78.1
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 7.1e-76 288.1 191 78.0
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 4.6e-75 285.4 258 60.1
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 5.1e-74 282.0 213 66.2
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 1.1e-73 280.8 222 63.5
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 8.2e-72 274.6 231 62.8
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 1.8e-71 273.5 277 55.6
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 3.1e-71 272.7 192 70.3
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 1.7e-69 266.9 223 67.3
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 8.5e-69 264.6 230 65.2
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 1.4e-68 263.8 226 64.6
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.9e-68 263.5 196 64.3
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.1e-66 255.4 167 77.8
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 4.1e-55 219.2 220 56.8
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 5.3e-55 218.8 212 61.8
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 1.4e-50 204.1 138 75.4
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 1.4e-50 204.1 125 79.2
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 2.2e-48 196.8 220 48.6
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 1.4e-47 194.1 199 49.7
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 1.5e-44 184.1 223 50.7
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 1.5e-44 184.1 178 61.2
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 8.0e-43 178.3 205 49.8
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.3e-42 176.8 121 74.4
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 7.7e-38 161.8 97 80.4
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 5.0e-37 159.1 97 79.4
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 1.1e-36 157.9 173 55.5
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 4.8e-32 142.5 277 38.3
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 1.2e-30 137.9 86 77.9
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 3.5e-30 136.3 179 46.9
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 2.3e-29 133.7 80 78.8
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 7.2e-28 128.6 104 66.3
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 2.1e-27 127.1 78 79.5
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 2.3e-21 107.1 70 72.9
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 2.0e-17 94.0 79 64.6
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 4.4e-17 92.8 152 45.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 5.8e-17 92.4 57 77.2
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 4.1e-15 86.3 50 80.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.1e-15 86.3 51 78.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.7e-13 80.9 55 70.9
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 1.1e-12 78.2 79 51.9
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 6.2e-11 72.4 48 72.9
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 2.3e-10 70.5 47 72.3
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 7.8e-06 55.5 39 66.7


User provided reference genes

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