Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 1.2e-191 672.9 324 100.0
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.5e-162 576.2 316 84.5
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 2.4e-160 568.9 317 83.3
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 5.4e-160 567.8 321 81.9
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 6.0e-159 564.3 316 83.5
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 5.1e-158 561.2 317 82.6
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 8.7e-158 560.5 316 82.0
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 8.7e-158 560.5 317 83.0
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.5e-157 559.7 315 83.2
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 1.9e-157 559.3 316 82.9
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 3.3e-157 558.5 316 82.9
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 4.3e-157 558.1 316 82.3
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 7.4e-157 557.4 316 81.3
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 9.6e-157 557.0 317 82.3
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 9.6e-157 557.0 316 82.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 1.3e-156 556.6 320 80.9
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 1.3e-156 556.6 317 81.7
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.1e-156 555.8 320 82.5
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 2.1e-156 555.8 316 83.2
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 2.8e-156 555.4 316 82.3
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.8e-156 555.4 316 82.6
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 4.8e-156 554.7 316 81.6
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 4.8e-156 554.7 317 81.4
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 6.2e-156 554.3 320 80.6
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 1.8e-155 552.7 316 81.6
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 1.8e-155 552.7 320 81.2
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.8e-155 552.7 316 81.0
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 4.0e-155 551.6 315 81.0
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 6.9e-155 550.8 320 80.6
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 2.6e-154 548.9 309 83.2
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 4.5e-154 548.1 300 84.7
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 4.5e-154 548.1 316 80.7
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 5.8e-154 547.7 300 85.0
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 7.6e-154 547.4 313 81.5
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 9.9e-154 547.0 320 79.4
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 1.3e-153 546.6 317 81.4
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.3e-153 546.6 316 80.4
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 1.7e-153 546.2 320 80.0
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 2.2e-153 545.8 316 80.4
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 2.2e-153 545.8 309 82.8
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 6.4e-153 544.3 316 78.2
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 8.4e-153 543.9 316 78.5
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 1.1e-152 543.5 315 81.0
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.1e-152 543.5 316 82.3
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 1.4e-152 543.1 317 81.1
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 1.4e-152 543.1 303 82.8
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.9e-152 542.7 317 78.9
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.9e-152 542.7 315 80.6
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.5e-152 542.3 315 80.3
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 7.1e-152 540.8 316 81.6
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 9.3e-152 540.4 317 78.9
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 2.7e-151 538.9 315 79.4
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 4.6e-151 538.1 318 78.9
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 4.6e-151 538.1 298 84.9
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 6.0e-151 537.7 314 80.3
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 6.7e-150 534.3 312 79.2
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 6.7e-150 534.3 317 77.6
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 8.7e-150 533.9 315 77.1
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 1.5e-149 533.1 365 71.5
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.3e-149 531.9 300 81.7
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 3.3e-149 531.9 300 82.7
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.3e-149 531.6 317 78.5
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 5.6e-149 531.2 300 82.7
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.6e-149 531.2 301 82.7
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 9.6e-149 530.4 317 78.5
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 3.7e-148 528.5 322 76.4
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 4.8e-148 528.1 311 80.1
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 1.4e-147 526.6 311 80.1
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 6.9e-147 524.2 310 79.7
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 9.0e-147 523.9 311 79.4
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.5e-146 521.5 311 78.5
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 7.6e-146 520.8 300 81.0
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.3e-145 520.0 299 82.3
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 2.1e-143 512.7 299 79.9
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 7.9e-143 510.8 299 78.3
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 7.4e-141 504.2 320 76.9
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 5.3e-139 498.0 292 79.1
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 9.0e-139 497.3 298 77.5
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.0e-137 493.8 309 76.7
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.0e-137 493.8 321 72.3
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.7e-137 493.0 316 73.1
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 5.0e-137 491.5 285 80.7
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.1e-136 490.3 300 77.0
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 5.5e-136 488.0 295 76.3
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 5.1e-134 481.5 315 70.2
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 5.7e-133 478.0 314 72.3
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 3.7e-132 475.3 319 70.2
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 5.9e-130 468.0 315 72.7
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.3e-129 466.8 263 82.5
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 6.5e-129 464.5 263 82.1
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 5.5e-128 461.5 271 79.3
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 9.4e-128 460.7 263 82.1
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.6e-127 458.8 266 79.7
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 1.5e-125 453.4 286 76.6
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 1.3e-124 450.3 248 82.3
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 2.0e-122 443.0 299 66.6
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 1.3e-121 440.3 255 79.2
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 4.2e-120 435.3 308 69.5
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 3.5e-114 415.6 288 65.6
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.5e-112 410.2 303 69.0
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 2.7e-111 406.0 259 74.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 4.7e-111 405.2 270 72.2
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 8.3e-108 394.4 317 58.4
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 3.8e-105 385.6 239 75.3
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 4.0e-102 375.6 219 80.4
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 1.7e-100 370.2 316 57.0
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.3e-94 349.7 207 78.3
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 1.1e-91 340.9 307 55.4
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 3.5e-90 335.9 326 51.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 7.5e-77 291.6 298 50.3
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 7.5e-77 291.6 289 47.8
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 4.9e-76 288.9 170 81.8
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.6e-74 282.3 212 62.3
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.4e-70 270.8 180 70.6
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 2.4e-67 260.0 170 74.1
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 2.3e-65 253.4 146 79.5
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.6e-63 247.3 166 69.3
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-59 234.6 150 75.3
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 3.9e-57 226.1 185 60.0
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 3.6e-55 219.5 183 60.1
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.3e-49 201.1 125 71.2
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 2.3e-49 200.3 115 77.4
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 3.0e-49 199.9 131 70.2
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.0e-45 187.2 107 82.2
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.3e-44 184.5 108 77.8
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 2.1e-42 177.2 124 68.5
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 7.4e-40 168.7 171 55.6
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 2.0e-37 160.6 119 63.0
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 3.5e-34 149.8 106 64.2
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 7.9e-34 148.7 315 34.9
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.9e-32 144.1 325 34.2
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 2.8e-31 140.2 95 73.7
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 6.9e-30 135.6 106 63.2
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 5.5e-27 125.9 68 88.2
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.3e-24 116.7 119 53.8
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.4e-22 111.3 302 30.1
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.9e-19 100.9 169 39.1
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.9e-19 100.9 68 69.1
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 5.5e-19 99.4 68 69.1
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 5.9e-13 79.3 55 67.3
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 1.3e-12 78.2 175 25.7
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.9e-11 74.3 283 27.6
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 9.4e-11 72.0 39 84.6
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 9.4e-11 72.0 39 84.6
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 2.1e-10 70.9 293 25.3
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 2.7e-10 70.5 39 82.1
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.7e-10 70.5 46 67.4
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 3.9e-09 66.6 277 26.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.5e-08 64.7 316 26.3
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 6.3e-07 59.3 64 48.4
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 1.4e-06 58.2 83 42.2
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 2.4e-06 57.4 200 26.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 7.0e-06 55.8 194 26.8
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.0e-06 55.8 194 27.3
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 7.0e-06 55.8 120 32.5
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.1e-06 55.5 194 26.8


User provided reference genes

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