Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 4.0e-145 518.1 263 100.0
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 1.3e-42 177.6 276 47.5
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.9e-42 176.4 277 46.2
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 1.1e-41 174.5 277 46.2
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.6e-40 170.6 284 44.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 1.6e-40 170.6 278 44.6
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 2.7e-40 169.9 276 44.9
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 7.8e-40 168.3 279 44.4
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 1.7e-39 167.2 285 43.9
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 2.3e-39 166.8 281 44.5
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 3.0e-39 166.4 284 43.3
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 3.0e-39 166.4 279 41.9
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.0e-39 166.4 276 44.9
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 3.9e-39 166.0 277 43.3
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 3.9e-39 166.0 276 44.9
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.9e-39 166.0 277 44.8
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 2.5e-38 163.3 286 42.7
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 2.5e-38 163.3 280 42.5
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 9.5e-38 161.4 278 40.6
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.2e-37 161.0 258 45.7
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 1.6e-37 160.6 279 42.7
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 4.7e-37 159.1 283 43.1
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.1e-36 157.9 278 43.2
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 1.2e-35 154.5 276 42.4
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 1.2e-35 154.5 277 41.9
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.2e-35 154.5 275 42.5
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 1.5e-35 154.1 278 43.5
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 2.6e-35 153.3 271 41.0
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.4e-35 152.9 278 43.2
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 7.6e-35 151.8 274 42.3
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 7.6e-35 151.8 282 39.4
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 7.6e-35 151.8 278 41.7
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 2.2e-34 150.2 278 41.7
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 2.2e-34 150.2 278 41.4
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 2.2e-34 150.2 278 41.4
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 2.9e-34 149.8 289 40.8
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 2.9e-34 149.8 278 43.2
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 4.9e-34 149.1 275 43.3
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 6.4e-34 148.7 273 40.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 6.4e-34 148.7 268 41.0
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 8.4e-34 148.3 279 40.5
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.1e-33 147.9 280 41.4
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.1e-33 147.9 287 42.5
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.9e-33 147.1 290 39.7
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.9e-33 147.1 262 41.6
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.4e-33 146.7 273 41.0
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 3.2e-33 146.4 276 39.5
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 5.4e-33 145.6 275 40.4
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 9.2e-33 144.8 272 38.6
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.2e-32 144.4 276 41.7
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 1.6e-32 144.1 294 39.5
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.6e-32 144.1 279 40.9
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 2.1e-32 143.7 281 40.9
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 3.5e-32 142.9 271 40.6
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 4.6e-32 142.5 271 42.1
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 4.6e-32 142.5 271 40.6
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 6.0e-32 142.1 257 40.1
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 1.0e-31 141.4 275 40.7
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 1.7e-31 140.6 286 40.2
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 1.7e-31 140.6 270 43.0
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 2.3e-31 140.2 303 39.6
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 2.3e-31 140.2 283 39.2
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 5.1e-31 139.0 278 38.1
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 6.6e-31 138.7 265 41.1
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 8.7e-31 138.3 262 42.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 7.3e-30 135.2 265 37.7
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.6e-29 134.0 281 39.5
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 2.1e-29 133.7 276 38.8
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 2.1e-29 133.7 273 38.8
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 3.6e-29 132.9 270 39.6
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.7e-29 132.5 268 39.6
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 6.2e-29 132.1 279 37.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.4e-28 131.0 278 39.9
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.4e-28 131.0 283 38.5
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 3.1e-28 129.8 264 38.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 3.1e-28 129.8 199 44.2
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 9.0e-28 128.3 257 38.1
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.2e-27 127.9 275 37.8
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.5e-27 127.5 247 40.9
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.5e-27 127.5 272 37.5
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 2.0e-27 127.1 262 38.5
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 2.0e-27 127.1 276 38.0
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 2.6e-27 126.7 277 37.9
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 3.4e-27 126.3 250 40.4
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.4e-27 125.9 281 37.0
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.8e-27 125.6 272 39.7
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 9.9e-27 124.8 274 38.7
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 1.3e-26 124.4 242 40.9
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 1.3e-26 124.4 182 46.2
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 2.2e-26 123.6 275 37.8
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.8e-26 122.9 260 38.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 4.9e-26 122.5 202 44.6
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 6.4e-26 122.1 202 44.6
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 8.4e-26 121.7 250 40.8
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 1.9e-25 120.6 260 38.1
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 1.9e-25 120.6 260 38.1
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 1.9e-25 120.6 250 37.6
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 2.4e-25 120.2 263 36.9
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 3.2e-25 119.8 281 36.7
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 3.2e-25 119.8 195 41.0
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 4.2e-25 119.4 264 37.1
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 4.2e-25 119.4 264 37.1
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 7.1e-25 118.6 261 37.9
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 7.1e-25 118.6 261 37.9
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 7.1e-25 118.6 264 36.4
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 9.3e-25 118.2 258 36.8
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 9.3e-25 118.2 286 37.4
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-24 117.5 240 40.8
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 1.6e-24 117.5 254 39.8
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 3.5e-24 116.3 266 35.0
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 3.5e-24 116.3 275 38.2
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 7.8e-24 115.2 264 36.7
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 1.0e-23 114.8 252 36.9
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 1.3e-23 114.4 264 36.7
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.0e-23 113.2 275 38.5
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 3.9e-23 112.8 265 37.4
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.1e-22 111.3 274 37.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 1.5e-22 110.9 254 35.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 1.9e-22 110.5 258 38.0
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 2.5e-22 110.2 269 36.4
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 3.3e-22 109.8 260 36.9
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.3e-22 109.4 269 36.4
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 4.8e-21 105.9 262 36.6
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 8.1e-21 105.1 277 33.9
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.8e-20 104.0 273 37.4
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 9.0e-20 101.7 250 35.6
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 2.2e-18 97.1 198 39.4
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 6.4e-18 95.5 259 34.4
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.4e-17 93.6 186 39.8
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.2e-17 93.2 198 40.4
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 4.2e-17 92.8 229 36.2
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 5.1e-15 85.9 278 36.0
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 6.7e-15 85.5 179 34.1
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 4.3e-14 82.8 261 32.6
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 7.4e-14 82.0 183 39.3
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.4e-11 73.2 129 41.1
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 2.2e-10 70.5 183 34.4
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 2.4e-09 67.0 287 30.3
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.5e-08 63.2 109 43.1
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 3.3e-06 56.6 150 34.0
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 3.3e-06 56.6 72 48.6
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 7.4e-06 55.5 84 44.0


User provided reference genes

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