Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1481 Punica granatum HOM05D007620 ORTHO05D009568 5.6e-83 310.8 151 100.0
PGR004G2089 Punica granatum HOM05D007620 ORTHO05D009568 2.4e-25 119.4 69 87.0
FAN02G1272 Fragaria x ananassa HOM05D004964 ORTHO05D005918 2.8e-18 95.9 69 66.7
Sabra13G0043000 Salix brachista HOM05D007620 ORTHO05D009568 2.8e-18 95.9 69 69.6
FvH4_6g01920 Fragaria vesca HOM05D007620 ORTHO05D009568 6.3e-18 94.7 69 65.2
FAN05G4025 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.3e-18 94.7 69 65.2
FAN05G4826 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.3e-18 94.7 69 65.2
FAN14G2205 Fragaria x ananassa HOM05D004964 ORTHO05D005918 6.3e-18 94.7 69 65.2
Haze_04424 Corylus avellana HOM05D007620 ORTHO05D009568 8.2e-18 94.4 69 68.1
CDE04G2606 Ceratophyllum demersum HOM05D007620 ORTHO05D009568 1.1e-17 94.0 73 63.0
Lj5g0020911 Lotus japonicus HOM05D007620 ORTHO05D009568 1.1e-17 94.0 69 65.2
Lj1g0023548 Lotus japonicus HOM05D007620 ORTHO05D009568 1.4e-17 93.6 73 60.3
MD04G1230300 Malus domestica HOM05D007620 ORTHO05D009568 1.8e-17 93.2 70 64.3
Nn1g02811 Nelumbo nucifera HOM05D007620 ORTHO05D009568 2.4e-17 92.8 74 63.5
Thecc.05G270800 Theobroma cacao HOM05D007620 ORTHO05D009568 2.4e-17 92.8 69 68.1
Cfa006355 Carpinus fangiana HOM05D007620 ORTHO05D009568 3.1e-17 92.4 69 65.2
RcHm_v2.0_Chr3g0449651 Rosa chinensis HOM05D007620 ORTHO05D009568 3.1e-17 92.4 69 63.8
Medtr1g080110 Medicago truncatula HOM05D007620 ORTHO05D009568 4.1e-17 92.0 69 62.3
VMungo0720G2663 Vigna mungo HOM05D007620 ORTHO05D009568 4.1e-17 92.0 80 57.5
TAR362G1297 Trochodendron aralioides HOM05D007620 ORTHO05D009568 5.3e-17 91.7 73 65.8
Gohir.D11G257601 Gossypium hirsutum HOM05D007620 ORTHO05D009568 1.6e-16 90.1 72 62.5
Gorai.007G275900 Gossypium raimondii HOM05D007620 ORTHO05D009568 1.6e-16 90.1 72 62.5
Lalb_Chr21g0311191 Lupinus albus HOM05D007620 ORTHO05D009568 1.6e-16 90.1 69 63.8
Potri.019G019300 Populus trichocarpa HOM05D007620 ORTHO05D009568 1.6e-16 90.1 69 65.2
QL03p030456 Quercus lobata HOM05D007620 ORTHO05D009568 1.6e-16 90.1 69 63.8
GSVIVG01023503001 Vitis vinifera HOM05D007620 ORTHO05D009568 1.6e-16 90.1 69 65.2
Duzib177G1032 Durio zibethinus HOM05D007620 ORTHO05D009568 2.0e-16 89.7 74 59.5
Eucgr.H04228 Eucalyptus grandis HOM05D007620 ORTHO05D009568 2.0e-16 89.7 69 65.2
Lalb_Chr06g0168291 Lupinus albus HOM05D007620 ORTHO05D009568 2.6e-16 89.4 69 63.8
Psat0s1841g0080 Pisum sativum HOM05D007620 ORTHO05D009568 2.6e-16 89.4 69 60.9
Potri.013G047000 Populus trichocarpa HOM05D007620 ORTHO05D009568 2.6e-16 89.4 69 63.8
Dinv24674 Davidia involucrata HOM05D007620 ORTHO05D009568 3.5e-16 89.0 67 67.2
Glyma.20G222800 Glycine max HOM05D007620 ORTHO05D009568 3.5e-16 89.0 69 63.8
PSO210G6557 Papaver somniferum HOM05D007620 ORTHO05D009568 4.5e-16 88.6 79 60.8
CsaV3_1G045110 Cucumis sativus L. HOM05D007620 ORTHO05D009568 5.9e-16 88.2 69 65.2
Hma1.2p1_1512F.1_g287900 Hydrangea macrophylla HOM05D007620 ORTHO05D009568 5.9e-16 88.2 69 65.2
Oeu026591.1 Olea europaea HOM05D007620 ORTHO05D009568 5.9e-16 88.2 73 58.9
MELO3C010128.2 Cucumis melo HOM05D007620 ORTHO05D009568 7.7e-16 87.8 69 65.2
Lsat_1_v5_gn_8_24880 Lactuca sativa HOM05D007620 ORTHO05D009568 1.0e-15 87.4 68 61.8
Manes.08G053900 Manihot esculenta HOM05D007620 ORTHO05D009568 1.0e-15 87.4 69 60.9
ClCG03G009720 Citrullus lanatus HOM05D007620 ORTHO05D009568 1.7e-15 86.7 67 65.7
Phvul.008G151824 Phaseolus vulgaris HOM05D007620 ORTHO05D009568 1.7e-15 86.7 78 55.1
ATR0736G141 Amborella trichopoda HOM05D007620 ORTHO05D009568 2.9e-15 85.9 72 59.7
Aqoxy5G00210 Aquilegia oxysepala HOM05D007620 ORTHO05D009568 2.9e-15 85.9 69 63.8
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 2.9e-15 85.9 67 62.7
CSS0021218 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.5e-15 84.7 67 59.7
CSS0034254 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 6.5e-15 84.7 67 59.7
Lj2C43T7 Lonicera japonica HOM05D007620 ORTHO05D009568 6.5e-15 84.7 72 58.3
CSS0013452 Camellia sinensis var. sinensis HOM05D007620 ORTHO05D009568 1.5e-14 83.6 67 58.2
MD12G1247400 Malus domestica HOM05D007620 ORTHO05D009568 1.9e-14 83.2 70 58.6
Gohir.A11G247300 Gossypium hirsutum HOM05D007620 ORTHO05D009568 4.2e-14 82.0 62 67.7
Sed0010835 Sechium edule HOM05D007620 ORTHO05D009568 5.5e-14 81.6 69 60.9
COL.COLO4_15485 Corchorus olitorius HOM05D007620 ORTHO05D009568 1.6e-13 80.1 62 66.1
Sp3g03610 Schrenkiella parvula HOM05D007620 ORTHO05D009568 2.1e-13 79.7 79 51.9
Migut.F00879 Erythranthe guttata HOM05D007620 ORTHO05D009568 3.6e-13 79.0 73 53.4
Glyma.10G166400 Glycine max HOM05D007620 ORTHO05D009568 3.6e-13 79.0 69 59.4
AT3G04760 Arabidopsis thaliana HOM05D007620 ORTHO05D009568 4.7e-13 78.6 79 51.9
CANSAT21G0311 Cannabis sativa HOM05D007620 ORTHO05D009568 4.7e-13 78.6 104 42.3
Atru.chr2.986 Acer truncatum HOM05D007620 ORTHO05D009568 6.1e-13 78.2 72 55.6
AL3G14890 Arabidopsis lyrata HOM05D007620 ORTHO05D009568 6.1e-13 78.2 79 51.9
Glyma.03G251200 Glycine max HOM05D007620 ORTHO05D009568 6.1e-13 78.2 69 58.0
THA.LOC104801727 Tarenaya hassleriana HOM05D007620 ORTHO05D009568 6.1e-13 78.2 68 55.9
Carub.0003s0393 Capsella rubella HOM05D007620 ORTHO05D009568 8.0e-13 77.8 79 49.4
Cc02_g08810 Coffea canephora HOM05D007620 ORTHO05D009568 8.0e-13 77.8 69 58.0
C05p62520 Brassica napus HOM05D007620 ORTHO05D009568 1.0e-12 77.4 79 50.6
BolC5t34907H Brassica oleracea HOM05D007620 ORTHO05D009568 1.0e-12 77.4 79 51.9
TPR.G22332 Trifolium pratense HOM05D007620 ORTHO05D009568 1.4e-12 77.0 68 55.9
Aa31LG5G15170 Aethionema arabicum HOM05D007620 ORTHO05D009568 4.0e-12 75.5 88 45.5
A05p42800 Brassica napus HOM05D007620 ORTHO05D009568 6.7e-12 74.7 68 52.9
BraA05t22972Z Brassica rapa HOM05D007620 ORTHO05D009568 6.7e-12 74.7 68 52.9
Psat6g139880 Pisum sativum HOM05D007620 ORTHO05D009568 6.7e-12 74.7 63 57.1
CARHR079010 Cardamine hirsuta HOM05D007620 ORTHO05D009568 1.2e-11 73.9 68 52.9
Psat0s1841g0040 Pisum sativum HOM05D007620 ORTHO05D009568 2.0e-11 73.2 62 56.5
Solyc04g010060.2 Solanum lycopersicum HOM05D007620 ORTHO05D009568 3.3e-11 72.4 71 52.1
EL10Ac4g09018 Beta vulgaris HOM05D007620 ORTHO05D009568 5.7e-11 71.6 67 53.7
PGSC0003DMG400011475 Solanum tuberosum HOM05D007620 ORTHO05D009568 5.7e-11 71.6 72 50.0
Ca_09448_v3 Cicer arietinum L. HOM05D007620 ORTHO05D009568 7.5e-11 71.2 103 44.7
Ciclev10019446m.g Citrus clementina HOM05D007620 ORTHO05D009568 1.3e-10 70.5 69 55.1
MD12G1247200 Malus domestica HOM05D007620 ORTHO05D009568 1.7e-10 70.1 60 58.3
Ah.06g191910 Amaranthus hybridus HOM05D007620 ORTHO05D009568 3.7e-10 68.9 91 38.5
Peaxi162Scf00528g00227 Petunia axillaris HOM05D007620 ORTHO05D009568 3.7e-10 68.9 71 49.3
AUR62040929 Chenopodium quinoa HOM05D007620 ORTHO05D009568 5.3e-09 65.1 67 49.3
CAN.G358.141 Capsicum annuum HOM05D007620 ORTHO05D009568 1.2e-08 63.9 65 55.4
AUR62004839 Chenopodium quinoa HOM05D007620 ORTHO05D009568 1.2e-08 63.9 67 47.8
SGA_v2.0_scaffold13G06478 Striga asiatica HOM05D007620 ORTHO05D009568 2.0e-08 63.2 73 45.2
Sc09g0004220 Simmondsia chinensis HOM05D007620 ORTHO05D009568 5.9e-08 61.6 69 47.8
Lj2C43T8 Lonicera japonica HOM05D007620 ORTHO05D009568 5.5e-06 55.1 66 45.5
Prupe.6G350200 Prunus persica HOM05D007620 ORTHO05D009568 7.2e-06 54.7 34 70.6


User provided reference genes

Program Settings