Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 4.8e-291 1003.8 526 100.0
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 7.1e-250 867.1 542 83.8
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 8.6e-248 860.1 512 85.5
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 8.9e-245 850.1 514 84.0
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 2.6e-244 848.6 533 82.2
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 5.8e-244 847.4 514 83.9
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 1.7e-243 845.9 514 83.7
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 4.9e-243 844.3 514 83.5
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 9.2e-242 840.1 520 83.1
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 4.6e-241 837.8 526 80.8
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.0e-240 836.6 505 83.2
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.3e-240 836.3 520 81.5
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 1.7e-240 835.9 507 82.4
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 1.9e-239 832.4 526 80.4
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 5.6e-239 830.9 525 81.1
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 7.3e-239 830.5 532 80.8
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 9.6e-239 830.1 500 83.2
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 2.1e-238 828.9 525 80.2
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 6.2e-238 827.4 535 79.3
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 1.1e-237 826.6 519 80.9
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 2.4e-237 825.5 502 83.5
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 4.0e-237 824.7 525 80.6
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 8.9e-237 823.5 525 80.4
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 8.9e-237 823.5 525 79.6
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 1.2e-236 823.2 503 82.5
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 2.6e-236 822.0 500 83.0
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.8e-236 820.8 520 80.8
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 7.6e-236 820.5 506 82.0
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 2.9e-235 818.5 513 80.9
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 6.4e-235 817.4 511 82.2
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 4.2e-234 814.7 516 80.6
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 5.4e-234 814.3 516 80.4
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.2e-233 813.1 517 80.3
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 2.1e-233 812.4 498 81.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 2.1e-233 812.4 504 82.3
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 4.6e-233 811.2 546 78.2
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.0e-232 810.1 501 81.6
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 5.6e-231 804.3 510 80.2
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 5.3e-229 797.7 503 80.3
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 1.5e-228 796.2 503 80.7
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.9e-226 789.3 513 78.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.9e-226 789.3 516 78.3
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 2.7e-225 785.4 527 76.7
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 7.8e-225 783.9 511 78.5
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 8.7e-224 780.4 511 78.5
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 8.7e-224 780.4 507 78.9
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 1.5e-223 779.6 528 78.0
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 5.6e-223 777.7 509 76.6
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 1.3e-222 776.5 511 77.3
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 2.8e-222 775.4 505 78.0
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 2.4e-221 772.3 509 77.8
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.2e-220 770.0 501 77.2
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 3.4e-220 768.5 526 75.9
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 5.8e-220 767.7 513 77.2
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 7.6e-220 767.3 500 77.2
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 7.6e-220 767.3 540 73.3
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 9.9e-220 766.9 504 77.0
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 2.9e-219 765.4 504 76.8
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 3.8e-219 765.0 501 77.6
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 1.1e-218 763.5 525 76.6
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.1e-218 763.5 513 76.4
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 1.1e-218 763.5 504 76.6
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.9e-218 762.7 513 76.8
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 3.5e-217 758.4 526 74.5
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 1.3e-216 756.5 534 74.0
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 1.3e-216 756.5 511 75.9
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 2.3e-216 755.7 517 76.2
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 2.3e-216 755.7 521 74.9
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 3.0e-216 755.4 517 75.2
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 5.1e-216 754.6 514 73.5
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.5e-215 752.3 502 76.9
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 1.6e-214 749.6 527 75.5
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 4.0e-213 745.0 516 74.0
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 4.5e-212 741.5 503 75.7
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 7.6e-212 740.7 503 76.1
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 7.9e-209 730.7 588 67.0
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 1.0e-208 730.3 503 75.9
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 3.9e-208 728.4 505 75.2
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 1.9e-207 726.1 503 73.6
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 4.3e-207 724.9 472 79.2
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 3.1e-205 718.8 501 73.7
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 4.1e-205 718.4 509 72.7
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 6.1e-201 704.5 624 62.5
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 1.2e-196 690.3 496 72.2
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 2.1e-193 679.5 514 68.1
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 1.8e-192 676.4 516 67.2
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 3.3e-191 672.2 503 70.6
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.7e-190 669.8 501 67.3
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.2e-190 669.5 503 70.8
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.0e-188 662.9 578 62.8
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.6e-188 662.5 426 79.3
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 1.0e-187 660.6 439 77.9
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 1.4e-186 656.8 595 61.8
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.3e-179 633.6 495 63.8
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 1.3e-179 633.6 495 63.8
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 2.4e-173 612.8 458 67.5
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 1.0e-168 597.4 444 70.9
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.0e-164 583.2 373 78.0
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 8.5e-163 577.8 521 57.4
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 1.2e-159 567.4 486 60.7
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 6.6e-155 551.6 333 84.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 5.6e-154 548.5 383 74.2
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.5e-151 540.4 360 76.1
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 1.6e-140 503.8 335 76.1
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 4.0e-128 462.6 322 73.9
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.7e-118 430.6 249 84.7
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 1.6e-116 424.1 249 83.9
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 3.0e-115 419.9 509 46.8
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-112 410.6 453 55.6
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 9.3e-109 398.3 496 46.4
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 1.1e-101 374.8 240 79.2
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 2.9e-94 350.1 478 42.7
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.1e-80 305.1 310 57.4
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 7.9e-68 262.3 173 73.4
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 2.7e-55 220.7 503 35.2
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 5.9e-55 219.5 496 35.1
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 8.8e-51 205.7 199 58.3
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 1.7e-49 201.4 478 34.7
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.2e-44 185.3 112 83.9
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 6.3e-41 172.9 293 40.6
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 3.1e-40 170.6 129 70.5
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 6.6e-38 162.9 447 33.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-37 161.8 489 33.1
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 9.5e-37 159.1 480 32.9
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 9.5e-29 132.5 277 38.3
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.2e-28 132.1 277 37.9
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 4.7e-28 130.2 331 34.1
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.8e-27 128.3 300 34.7
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 4.4e-26 123.6 210 40.5
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 6.4e-25 119.8 220 40.5
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 1.4e-24 118.6 86 65.1
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 9.2e-24 115.9 353 30.9
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-23 114.4 158 43.0
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 3.9e-22 110.5 275 31.6
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 8.6e-22 109.4 158 41.8
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 5.6e-21 106.7 388 30.4
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 9.5e-21 105.9 209 37.3
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.6e-20 105.1 208 39.4
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 3.6e-20 104.0 396 30.3
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 1.1e-19 102.4 329 29.5
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.1e-19 102.4 74 64.9
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 3.1e-19 100.9 397 30.0
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 6.8e-19 99.8 63 74.6
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 2.0e-18 98.2 239 31.8
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 4.6e-15 87.0 361 29.1
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 1.9e-13 81.6 141 40.4
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 9.5e-13 79.3 293 30.7
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 2.3e-06 58.2 50 60.0
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 5.1e-06 57.0 32 78.1
FAN03G3401 Fragaria x ananassa HOM05D027463 ORTHO05D204185 8.6e-06 56.2 50 58.0
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 8.6e-06 56.2 45 64.4


User provided reference genes

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