Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1376 Punica granatum HOM05D003527 ORTHO05D004099 2.5e-116 422.2 219 100.0
Ciclev10012740m.g Citrus clementina HOM05D003527 ORTHO05D004099 4.6e-46 188.7 222 53.6
Thecc.05G040900 Theobroma cacao HOM05D003527 ORTHO05D004099 1.8e-45 186.8 225 55.1
Hma1.2p1_1513F.1_g288070 Hydrangea macrophylla HOM05D003527 ORTHO05D004099 8.8e-45 184.5 215 55.8
Actinidia26460 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.7e-44 181.8 217 55.3
QL07p048124 Quercus lobata HOM05D003527 ORTHO05D004099 5.7e-44 181.8 217 52.1
Duzib128G0537 Durio zibethinus HOM05D003527 ORTHO05D004099 1.7e-43 180.3 220 53.2
CSS0027996 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.8e-43 179.5 231 50.2
COL.COLO4_14818 Corchorus olitorius HOM05D003527 ORTHO05D004099 2.8e-43 179.5 228 52.2
Thecc.09G322900 Theobroma cacao HOM05D003527 ORTHO05D004099 4.8e-43 178.7 222 52.3
vmacro20143 Vaccinium macrocarpon HOM05D003527 ORTHO05D004099 4.8e-43 178.7 221 53.4
Eucgr.K03143 Eucalyptus grandis HOM05D003527 ORTHO05D004099 1.1e-42 177.6 228 53.9
TWI74G0830 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 1.8e-42 176.8 219 51.1
Potri.006G084400 Populus trichocarpa HOM05D003527 ORTHO05D004099 3.1e-42 176.0 225 51.6
GSVIVG01034186001 Vitis vinifera HOM05D003527 ORTHO05D004099 5.3e-42 175.3 229 52.4
Atru.chr8.1961 Acer truncatum HOM05D003527 ORTHO05D004099 6.9e-42 174.9 220 51.4
Haze_20770 Corylus avellana HOM05D003527 ORTHO05D004099 9.1e-42 174.5 219 52.5
Manes.04G034300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.5e-41 172.2 223 51.6
Manes.08G081800 Manihot esculenta HOM05D003527 ORTHO05D004099 5.9e-41 171.8 217 51.2
CiPaw.09G191600 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.0e-40 171.0 233 47.6
Sc12g0001550 Simmondsia chinensis HOM05D003527 ORTHO05D004099 2.9e-40 169.5 227 49.8
MSTRG.19089 Avicennia marina HOM05D003527 ORTHO05D004099 3.8e-40 169.1 220 51.4
Duzib168G1608 Durio zibethinus HOM05D003527 ORTHO05D004099 3.8e-40 169.1 226 50.4
Manes.09G089700 Manihot esculenta HOM05D003527 ORTHO05D004099 5.0e-40 168.7 221 49.8
TAR633G1470 Trochodendron aralioides HOM05D003527 ORTHO05D004099 6.5e-40 168.3 219 52.1
Ciclev10029234m.g Citrus clementina HOM05D003527 ORTHO05D004099 1.4e-39 167.2 224 48.7
Dinv37181 Davidia involucrata HOM05D003527 ORTHO05D004099 1.9e-39 166.8 146 70.5
Gohir.D07G102300 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.9e-39 166.8 229 48.0
Gorai.001G110200 Gossypium raimondii HOM05D003527 ORTHO05D004099 3.2e-39 166.0 229 47.2
Dinv12411 Davidia involucrata HOM05D003527 ORTHO05D004099 5.5e-39 165.2 226 51.3
Peaxi162Scf00165g01520 Petunia axillaris HOM05D003527 ORTHO05D004099 5.5e-39 165.2 221 48.4
Lj3g0018686 Lotus japonicus HOM05D003527 ORTHO05D004099 7.2e-39 164.9 220 47.7
Gohir.A07G097950 Gossypium hirsutum HOM05D003527 ORTHO05D004099 9.4e-39 164.5 229 47.6
Cc06_g02720 Coffea canephora HOM05D003527 ORTHO05D004099 2.1e-38 163.3 222 50.0
Potri.001G238900 Populus trichocarpa HOM05D003527 ORTHO05D004099 2.1e-38 163.3 225 49.3
MSTRG.5670 Avicennia marina HOM05D003527 ORTHO05D004099 2.7e-38 162.9 224 51.3
Gorai.009G099700 Gossypium raimondii HOM05D003527 ORTHO05D004099 6.1e-38 161.8 216 49.1
QL01p032299 Quercus lobata HOM05D003527 ORTHO05D004099 6.1e-38 161.8 227 49.3
Gohir.D05G096200 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.4e-37 160.6 216 49.1
Haze_24084 Corylus avellana HOM05D003527 ORTHO05D004099 1.8e-37 160.2 221 52.5
TAR623G1457 Trochodendron aralioides HOM05D003527 ORTHO05D004099 1.8e-37 160.2 168 61.3
Duzib093G1072 Durio zibethinus HOM05D003527 ORTHO05D004099 2.3e-37 159.8 213 49.3
Nn2g10383 Nelumbo nucifera HOM05D003527 ORTHO05D004099 2.3e-37 159.8 224 49.6
TAR636G1653 Trochodendron aralioides HOM05D003527 ORTHO05D004099 2.3e-37 159.8 218 49.5
Rhsim05G0191500 Rhododendron simsii HOM05D003527 ORTHO05D004099 3.0e-37 159.5 193 53.9
Duzib170G0558 Durio zibethinus HOM05D003527 ORTHO05D004099 5.2e-37 158.7 219 48.4
Sabra09G0021000 Salix brachista HOM05D003527 ORTHO05D004099 5.2e-37 158.7 229 48.5
Migut.J00336 Erythranthe guttata HOM05D003527 ORTHO05D004099 6.7e-37 158.3 167 59.9
Lj2A96T67 Lonicera japonica HOM05D003527 ORTHO05D004099 8.8e-37 157.9 219 48.4
VMungo1383G0208 Vigna mungo HOM05D003527 ORTHO05D004099 2.6e-36 156.4 203 50.7
FAN25G2547 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.7e-36 155.2 217 48.4
Phvul.008G099800 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 5.7e-36 155.2 172 57.6
Glyma.03G082900 Glycine max HOM05D003527 ORTHO05D004099 7.4e-36 154.8 218 46.3
Eucgr.J02057 Eucalyptus grandis HOM05D003527 ORTHO05D004099 9.7e-36 154.5 219 47.5
EL10Ac7g16007 Beta vulgaris HOM05D003527 ORTHO05D004099 1.7e-35 153.7 230 47.8
Gohir.A05G096000 Gossypium hirsutum HOM05D003527 ORTHO05D004099 2.2e-35 153.3 211 47.4
PSO384G3887 Papaver somniferum HOM05D003527 ORTHO05D004099 2.2e-35 153.3 228 48.2
SalBow3G4662 Salvia bowleyana HOM05D003527 ORTHO05D004099 2.2e-35 153.3 211 49.8
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 3.7e-35 152.5 185 54.6
GSVIVG01024982001 Vitis vinifera HOM05D003527 ORTHO05D004099 3.7e-35 152.5 154 58.4
Potri.009G030100 Populus trichocarpa HOM05D003527 ORTHO05D004099 4.8e-35 152.1 224 49.6
Aqoxy4G02910 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 8.2e-35 151.4 224 48.2
LjContig00564g0015687 Lotus japonicus HOM05D003527 ORTHO05D004099 1.4e-34 150.6 151 60.3
Sed0026502 Sechium edule HOM05D003527 ORTHO05D004099 1.4e-34 150.6 224 46.9
Cpa.g.sc81.162 Carica papaya HOM05D003527 ORTHO05D004099 2.4e-34 149.8 225 48.4
RcHm_v2.0_Chr5g0064221 Rosa chinensis HOM05D003527 ORTHO05D004099 4.1e-34 149.1 219 47.9
FAN21G2526 Fragaria x ananassa HOM05D003527 ORTHO05D004099 9.1e-34 147.9 220 47.7
Ah.08g219410 Amaranthus hybridus HOM05D003527 ORTHO05D004099 1.2e-33 147.5 229 47.2
Glyma.08G358400 Glycine max HOM05D003527 ORTHO05D004099 1.6e-33 147.1 172 54.7
ClCG02G020230 Citrullus lanatus HOM05D003527 ORTHO05D004099 2.0e-33 146.7 223 48.0
FAN16G0579 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.0e-33 146.7 220 46.8
TWI31G0174 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 2.0e-33 146.7 228 47.4
FAN11G1093 Fragaria x ananassa HOM05D003527 ORTHO05D004099 3.5e-33 146.0 222 46.8
Phvul.010G013400 Phaseolus vulgaris HOM05D003527 ORTHO05D004099 3.5e-33 146.0 209 43.5
Actinidia23946 Actinidia chinensis HOM05D003527 ORTHO05D004099 5.9e-33 145.2 233 46.8
Aqoxy2G02103 Aquilegia oxysepala HOM05D003527 ORTHO05D004099 5.9e-33 145.2 230 45.7
FAN09G0639 Fragaria x ananassa HOM05D003527 ORTHO05D004099 5.9e-33 145.2 227 41.4
Prupe.6G079000 Prunus persica HOM05D003527 ORTHO05D004099 5.9e-33 145.2 218 46.8
Sabra16G0144000 Salix brachista HOM05D003527 ORTHO05D004099 5.9e-33 145.2 223 47.5
FAN05G0377 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.7e-33 144.8 227 41.4
FAN09G3248 Fragaria x ananassa HOM05D003527 ORTHO05D004099 7.7e-33 144.8 227 41.4
AUR62001798 Chenopodium quinoa HOM05D003527 ORTHO05D004099 1.3e-32 144.1 230 47.4
MELO3C025924.2 Cucumis melo HOM05D003527 ORTHO05D004099 1.3e-32 144.1 220 46.4
PSO339G4025 Papaver somniferum HOM05D003527 ORTHO05D004099 1.3e-32 144.1 153 58.8
Psat0s4138g0040 Pisum sativum HOM05D003527 ORTHO05D004099 1.3e-32 144.1 168 54.8
Gohir.D11G345500 Gossypium hirsutum HOM05D003527 ORTHO05D004099 1.7e-32 143.7 223 47.1
Nn5g26928 Nelumbo nucifera HOM05D003527 ORTHO05D004099 1.7e-32 143.7 226 44.7
Dinv16990 Davidia involucrata HOM05D003527 ORTHO05D004099 2.2e-32 143.3 225 48.9
Dinv42939 Davidia involucrata HOM05D003527 ORTHO05D004099 2.2e-32 143.3 225 48.9
Dinv43161 Davidia involucrata HOM05D003527 ORTHO05D004099 2.2e-32 143.3 225 48.9
AUR62009585 Chenopodium quinoa HOM05D003527 ORTHO05D004099 2.9e-32 142.9 230 47.4
FAN02G4097 Fragaria x ananassa HOM05D003527 ORTHO05D004099 2.9e-32 142.9 227 41.4
CsaV3_3G034940 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.8e-32 142.5 222 45.0
Medtr7g059410 Medicago truncatula HOM05D003527 ORTHO05D004099 3.8e-32 142.5 147 55.8
Sed0011659 Sechium edule HOM05D003527 ORTHO05D004099 6.5e-32 141.7 225 43.1
Gohir.A11G326600 Gossypium hirsutum HOM05D003527 ORTHO05D004099 8.5e-32 141.4 231 45.9
Hund18916 Selenicereus undatus HOM05D003527 ORTHO05D004099 1.1e-31 141.0 233 45.9
FAN14G4675 Fragaria x ananassa HOM05D003527 ORTHO05D004099 1.5e-31 140.6 227 40.5
Lalb_Chr03g0035091 Lupinus albus HOM05D003527 ORTHO05D004099 2.5e-31 139.8 153 56.9
TWI79G0031 Tripterygium wilfordii HOM05D003527 ORTHO05D004099 3.2e-31 139.4 228 44.3
RcHm_v2.0_Chr3g0466801 Rosa chinensis HOM05D003527 ORTHO05D004099 5.5e-31 138.7 229 43.2
CANSAT35G0216 Cannabis sativa HOM05D003527 ORTHO05D004099 7.2e-31 138.3 238 45.0
COL.COLO4_18499 Corchorus olitorius HOM05D003527 ORTHO05D004099 9.4e-31 137.9 225 44.0
Hund04968 Selenicereus undatus HOM05D003527 ORTHO05D004099 9.4e-31 137.9 179 53.6
CiPaw.13G095400 Carya illinoinensis HOM05D003527 ORTHO05D004099 1.6e-30 137.1 233 47.6
Glyma.18G176700 Glycine max HOM05D003527 ORTHO05D004099 1.6e-30 137.1 142 58.5
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 2.1e-30 136.7 223 43.0
FvH4_6g13980 Fragaria vesca HOM05D003527 ORTHO05D004099 2.1e-30 136.7 232 39.2
Oeu024354.1 Olea europaea HOM05D003527 ORTHO05D004099 2.1e-30 136.7 183 53.6
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 2.7e-30 136.3 223 45.7
TPR.G23255 Trifolium pratense HOM05D003527 ORTHO05D004099 2.7e-30 136.3 185 48.6
MD11G1110500 Malus domestica HOM05D003527 ORTHO05D004099 3.6e-30 136.0 216 43.1
CiPaw.10G145200 Carya illinoinensis HOM05D003527 ORTHO05D004099 3.0e-29 132.9 189 52.9
Ca_26083_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 4.0e-29 132.5 154 56.5
TPR.G5587 Trifolium pratense HOM05D003527 ORTHO05D004099 1.2e-28 131.0 221 42.1
MD03G1096000 Malus domestica HOM05D003527 ORTHO05D004099 1.5e-28 130.6 170 52.9
Sopen09g005410 Solanum pennellii HOM05D003527 ORTHO05D004099 4.4e-28 129.0 231 42.9
ECA236G2982 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.3e-27 127.5 170 46.5
CSS0044295 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 3.7e-27 125.9 234 40.2
HanXRQChr05g0134511 Helianthus annuus HOM05D003527 ORTHO05D004099 1.1e-26 124.4 168 46.4
Psat7g236840 Pisum sativum HOM05D003527 ORTHO05D004099 1.4e-26 124.0 124 58.1
MELO3C009262.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.4e-26 123.2 210 42.4
arahy.Tifrunner.gnm1.ann1.95G3UD Arachis hypogaea HOM05D003527 ORTHO05D004099 3.1e-26 122.9 160 51.9
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.1e-26 122.9 217 44.2
C02p00460 Brassica napus HOM05D003527 ORTHO05D004099 5.3e-26 122.1 158 46.8
AT5G02440 Arabidopsis thaliana HOM05D003527 ORTHO05D004099 7.0e-26 121.7 168 47.6
CARHR210970 Cardamine hirsuta HOM05D003527 ORTHO05D004099 7.0e-26 121.7 158 47.5
MBI05_g30238_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 9.1e-26 121.3 152 51.3
Nitab4.5_0001800g0180 Nicotiana tabacum HOM05D003527 ORTHO05D004099 1.2e-25 120.9 235 40.4
Oeu011402.1 Olea europaea HOM05D003527 ORTHO05D004099 1.2e-25 120.9 152 50.7
arahy.Tifrunner.gnm1.ann1.QWF1SC Arachis hypogaea HOM05D003527 ORTHO05D004099 1.6e-25 120.6 150 54.0
CsaV3_4G024920 Cucumis sativus L. HOM05D003527 ORTHO05D004099 1.6e-25 120.6 162 51.2
BolC2t06046H Brassica oleracea HOM05D003527 ORTHO05D004099 2.0e-25 120.2 154 46.1
MELO3C003124.2 Cucumis melo HOM05D003527 ORTHO05D004099 2.7e-25 119.8 166 51.2
AL6G11680 Arabidopsis lyrata HOM05D003527 ORTHO05D004099 4.5e-25 119.0 163 47.2
Carub.0006s0124 Capsella rubella HOM05D003527 ORTHO05D004099 4.5e-25 119.0 171 46.2
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.5e-25 119.0 216 42.1
Thhalv10014850m.g Eutrema salsugineum HOM05D003527 ORTHO05D004099 5.9e-25 118.6 164 47.0
Glyma.15G039000 Glycine max HOM05D003527 ORTHO05D004099 3.8e-24 115.9 223 41.7
ClCG10G021090 Citrullus lanatus HOM05D003527 ORTHO05D004099 5.0e-24 115.5 273 35.9
Lsat_1_v5_gn_8_75920 Lactuca sativa HOM05D003527 ORTHO05D004099 5.0e-24 115.5 161 43.5
ClCG04G008250 Citrullus lanatus HOM05D003527 ORTHO05D004099 6.5e-24 115.2 147 53.7
Medtr2g096780 Medicago truncatula HOM05D003527 ORTHO05D004099 5.5e-23 112.1 166 50.0
MBI14_g37823_MAGBIO Magnolia biondii HOM05D003527 ORTHO05D004099 9.4e-23 111.3 151 49.0
VMungo1080G1739 Vigna mungo HOM05D003527 ORTHO05D004099 1.2e-22 110.9 226 40.3
Peaxi162Scf00832g00018 Petunia axillaris HOM05D003527 ORTHO05D004099 2.7e-22 109.8 172 45.3
CsaV3_6G016930 Cucumis sativus L. HOM05D003527 ORTHO05D004099 3.6e-22 109.4 178 43.8
Solyc11g066010.2 Solanum lycopersicum HOM05D003527 ORTHO05D004099 3.6e-22 109.4 235 37.4
Sopen11g025750 Solanum pennellii HOM05D003527 ORTHO05D004099 3.6e-22 109.4 235 38.3
Manes.11G131300 Manihot esculenta HOM05D003527 ORTHO05D004099 4.7e-22 109.0 162 43.8
Rhsim13G0083400 Rhododendron simsii HOM05D003527 ORTHO05D004099 6.1e-22 108.6 234 40.6
THA.LOC104816278 Tarenaya hassleriana HOM05D003527 ORTHO05D004099 1.4e-21 107.5 147 51.0
DCAR_005975 Daucus carota HOM05D003527 ORTHO05D004099 1.8e-21 107.1 162 49.4
Glyma.13G335402 Glycine max HOM05D003527 ORTHO05D004099 8.8e-21 104.8 104 64.4
ECA247G3528 Erigeron canadensis HOM05D003527 ORTHO05D004099 1.2e-20 104.4 162 44.4
Nitab4.5_0007604g0010 Nicotiana tabacum HOM05D003527 ORTHO05D004099 3.4e-20 102.8 235 37.4
Lsat_1_v5_gn_9_23221 Lactuca sativa HOM05D003527 ORTHO05D004099 4.4e-20 102.4 159 44.7
PGSC0003DMG400000395 Solanum tuberosum HOM05D003527 ORTHO05D004099 7.5e-20 101.7 231 35.9
SGA_v2.0_scaffold126G33793 Striga asiatica HOM05D003527 ORTHO05D004099 9.8e-20 101.3 166 42.8
MD04G1126900 Malus domestica HOM05D003527 ORTHO05D004099 2.8e-19 99.8 167 41.3
TPR.G34322 Trifolium pratense HOM05D003527 ORTHO05D004099 4.8e-19 99.0 147 46.3
PSO151G0026 Papaver somniferum HOM05D003527 ORTHO05D004099 6.3e-19 98.6 158 47.5
PSO339G2088 Papaver somniferum HOM05D003527 ORTHO05D004099 8.3e-19 98.2 157 47.8
CAN.G327.10 Capsicum annuum HOM05D003527 ORTHO05D004099 1.1e-18 97.8 166 41.6
ATR0559G115 Amborella trichopoda HOM05D003527 ORTHO05D004099 3.1e-18 96.3 158 46.2
HanXRQChr08g0234711 Helianthus annuus HOM05D003527 ORTHO05D004099 1.2e-17 94.4 164 43.3
arahy.Tifrunner.gnm1.ann1.8UVC92 Arachis hypogaea HOM05D003527 ORTHO05D004099 5.9e-17 92.0 91 59.3
ATR0680G191 Amborella trichopoda HOM05D003527 ORTHO05D004099 2.2e-16 90.1 227 35.2
Prupe.6G253600 Prunus persica HOM05D003527 ORTHO05D004099 3.8e-16 89.4 231 35.5
FvH4_3g35940 Fragaria vesca HOM05D003527 ORTHO05D004099 8.5e-16 88.2 160 41.2
Medtr4g021875 Medicago truncatula HOM05D003527 ORTHO05D004099 1.1e-15 87.8 161 42.9
Sed0028236 Sechium edule HOM05D003527 ORTHO05D004099 5.5e-15 85.5 151 41.7
CDE02G3270 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 3.6e-14 82.8 184 38.0
CDE08G1604 Ceratophyllum demersum HOM05D003527 ORTHO05D004099 1.8e-13 80.5 154 39.0
PGR102G2755 Punica granatum HOM05D003527 ORTHO05D004099 2.3e-13 80.1 159 40.3
arahy.Tifrunner.gnm1.ann1.0C4VVF Arachis hypogaea HOM05D003527 ORTHO05D004099 3.0e-13 79.7 155 39.4
arahy.Tifrunner.gnm1.ann1.QZ6FSS Arachis hypogaea HOM05D003527 ORTHO05D004099 6.8e-13 78.6 154 39.6
Ca_12948_v3 Cicer arietinum L. HOM05D003527 ORTHO05D004099 1.3e-11 74.3 149 35.6
Sc01g0004200 Simmondsia chinensis HOM05D003527 ORTHO05D004099 3.7e-11 72.8 112 48.2
RcHm_v2.0_Chr2g0141581 Rosa chinensis HOM05D003527 ORTHO05D004099 1.1e-10 71.2 60 65.0
Dinv35615 Davidia involucrata HOM05D003527 ORTHO05D004099 4.1e-10 69.3 60 70.0
Actinidia34400 Actinidia chinensis HOM05D003527 ORTHO05D004099 3.5e-09 66.2 67 65.7
Atru.chr3.3891 Acer truncatum HOM05D003527 ORTHO05D004099 2.9e-08 63.2 56 66.1
SEGI_38129 Sequoiadendron giganteum HOM05D003527 ORTHO05D004099 5.0e-08 62.4 112 42.0
SEGI_17757 Sequoiadendron giganteum HOM05D007507 ORTHO05D009420 1.1e-07 61.2 151 35.1


User provided reference genes

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