Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 8.9e-47 189.9 93 100.0
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 3.5e-43 177.9 93 92.5
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 9.5e-41 169.9 92 87.0
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.2e-40 169.5 93 87.1
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.1e-40 168.7 93 86.0
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.1e-40 168.7 93 88.2
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.7e-40 167.5 93 84.9
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 8.0e-40 166.8 93 87.1
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.8e-39 165.6 93 86.0
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.3e-39 165.2 92 88.0
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 86.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 4.0e-39 164.5 93 83.9
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 5.2e-39 164.1 93 84.9
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 86.0
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.8e-39 163.7 93 84.9
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 8.9e-39 163.3 92 84.8
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 8.9e-39 163.3 93 84.9
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.2e-38 162.9 92 85.9
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 86.0
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 86.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 83.9
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.0e-38 162.2 93 84.9
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.6e-38 161.8 93 83.9
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 83.9
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 83.9
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 3.4e-38 161.4 93 84.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.4e-38 161.0 92 83.7
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.4e-38 161.0 93 84.9
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 82.8
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 7.5e-38 160.2 93 82.8
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 82.8
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 82.8
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 9.8e-38 159.8 93 83.9
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 1.3e-37 159.5 92 83.7
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 82.8
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 82.8
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.3e-37 159.5 93 81.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 82.8
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 82.8
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 82.8
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.7e-37 159.1 93 81.7
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.7e-37 159.1 91 82.4
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 83.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 91 84.6
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 82.8
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-37 158.3 93 81.7
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 3.7e-37 157.9 92 80.4
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 4.9e-37 157.5 91 82.4
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 6.4e-37 157.1 93 81.7
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.4e-37 157.1 93 82.8
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 6.4e-37 157.1 93 80.6
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.1e-36 156.4 89 86.5
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.1e-36 156.4 92 81.5
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 80.6
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 80.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 80.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.4e-36 156.0 93 80.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 79.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.9e-36 155.6 93 79.6
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.4e-36 155.2 86 86.0
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.4e-36 155.2 92 79.3
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 3.2e-36 154.8 93 81.7
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 77.4
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 80.6
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 4.1e-36 154.5 93 80.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 5.4e-36 154.1 86 87.2
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 5.4e-36 154.1 93 80.6
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 7.0e-36 153.7 93 79.6
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 9.2e-36 153.3 84 86.9
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 9.2e-36 153.3 94 80.9
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 9.2e-36 153.3 93 77.4
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.2e-35 152.9 91 79.1
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.6e-35 152.5 93 80.6
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.0e-35 152.1 95 80.0
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.5e-35 151.4 90 80.0
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 3.5e-35 151.4 94 79.8
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 3.5e-35 151.4 91 81.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 3.5e-35 151.4 91 81.3
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 4.6e-35 151.0 90 80.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 6.0e-35 150.6 90 81.1
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 6.0e-35 150.6 86 84.9
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 6.0e-35 150.6 93 78.5
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 6.0e-35 150.6 93 80.6
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 7.8e-35 150.2 86 82.6
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.3e-34 149.4 87 82.8
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 2.3e-34 148.7 94 78.7
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 2.3e-34 148.7 93 77.4
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 2.3e-34 148.7 93 78.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.3e-34 148.7 87 81.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 3.9e-34 147.9 94 77.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 6.6e-34 147.1 95 74.7
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 6.6e-34 147.1 95 74.7
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 8.6e-34 146.7 82 82.9
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 79.5
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-33 146.0 88 79.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 1.5e-33 146.0 93 76.3
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.5e-33 146.0 86 80.2
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 77.7
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 75.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 3.3e-33 144.8 95 74.7
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 3.3e-33 144.8 95 74.7
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 7.3e-33 143.7 90 76.7
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.2e-32 142.9 88 78.4
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.2e-32 142.9 88 78.4
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.6e-32 141.4 87 78.2
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 3.6e-32 141.4 94 74.5
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 3.6e-32 141.4 93 77.4
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-32 141.4 78 83.3
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-32 141.4 78 83.3
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-32 141.4 78 83.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 4.7e-32 141.0 85 80.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 6.2e-32 140.6 88 77.3
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 8.1e-32 140.2 88 77.3
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.4e-31 139.4 115 63.5
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.4e-31 139.4 91 73.6
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 3.1e-31 138.3 85 78.8
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.1e-31 138.3 93 75.3
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.2e-30 136.3 92 72.8
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 1.2e-30 136.3 87 73.6
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 2.6e-30 135.2 71 90.1
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 2.6e-30 135.2 92 72.8
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 3.4e-30 134.8 91 72.5
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.5e-30 133.7 71 91.5
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 2.2e-29 132.1 70 90.0
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.9e-29 131.0 87 73.6
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 6.4e-29 130.6 76 80.3
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 8.3e-29 130.2 73 84.9
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.1e-28 129.8 70 87.1
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 7.1e-28 127.1 70 85.7
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-27 125.6 71 84.5
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.5e-27 124.8 71 84.5
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 4.6e-27 124.4 71 81.7
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 4.6e-27 124.4 70 85.7
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.3e-26 122.9 70 82.9
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.7e-26 122.5 70 81.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.3e-26 122.1 116 56.0
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-23 113.2 93 59.1
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.1e-23 111.7 71 77.5
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.2e-22 109.8 71 77.5
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 2.0e-22 109.0 68 73.5
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 5.8e-22 107.5 70 77.1
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 1.3e-21 106.3 82 64.6
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 3.2e-20 101.7 50 92.0
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 4.1e-20 101.3 91 61.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.4e-20 100.9 98 56.1
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.1e-19 99.0 86 57.0
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 2.3e-18 95.5 90 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 8.9e-15 83.6 82 48.8
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.8e-14 80.9 49 79.6
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 51 70.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 51 70.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 51 70.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 80.9 51 70.6
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.9e-14 80.1 58 65.5
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 8.4e-13 77.0 48 77.1
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.2e-12 75.1 49 69.4
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.4e-12 74.3 47 68.1
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.6e-11 72.8 56 58.9
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 1.0e-10 70.1 54 63.0
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.3e-10 69.7 44 75.0
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 2.0e-06 55.8 26 96.2


User provided reference genes

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