Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 1.6e-172 609.4 324 100.0
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 2.8e-116 422.5 297 77.1
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 4.8e-116 421.8 323 73.1
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 6.3e-116 421.4 297 77.8
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.8e-115 419.9 287 78.7
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 1.8e-115 419.9 323 73.7
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 7.0e-115 417.9 303 71.9
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 1.2e-114 417.2 303 71.6
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 4.5e-114 415.2 294 77.2
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 2.9e-113 412.5 312 73.7
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 3.8e-113 412.1 308 75.6
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 1.1e-112 410.6 323 68.7
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 1.5e-112 410.2 317 71.6
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 1.9e-112 409.8 287 74.2
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 9.4e-112 407.5 267 78.7
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 1.6e-111 406.8 315 72.7
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.6e-111 406.8 318 69.8
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.6e-111 406.8 319 71.5
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 2.7e-111 406.0 267 80.5
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 6.1e-111 404.8 302 70.5
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 1.4e-110 403.7 299 72.2
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.3e-110 402.9 320 71.6
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 4.0e-110 402.1 318 68.2
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 4.0e-110 402.1 274 74.8
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 5.2e-110 401.7 278 74.1
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 6.8e-110 401.4 324 68.8
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 6.8e-110 401.4 319 72.1
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 1.5e-109 400.2 320 70.0
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 2.0e-109 399.8 267 75.7
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.6e-109 399.4 270 80.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 4.4e-109 398.7 328 69.2
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 7.5e-109 397.9 269 79.6
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 7.5e-109 397.9 319 67.4
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 9.7e-109 397.5 287 74.2
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 4.8e-108 395.2 267 79.8
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 4.8e-108 395.2 274 75.2
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 4.8e-108 395.2 271 76.8
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 6.3e-108 394.8 318 67.6
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 6.3e-108 394.8 313 71.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 1.4e-107 393.7 270 78.9
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.1e-107 392.5 281 77.9
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.1e-107 392.5 281 77.2
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 3.1e-107 392.5 281 77.2
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 1.2e-106 390.6 271 78.2
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 1.6e-106 390.2 283 71.4
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 1.6e-106 390.2 315 70.2
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.0e-106 389.8 275 74.2
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 3.5e-106 389.0 324 65.7
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 4.5e-106 388.7 276 73.9
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 4.5e-106 388.7 303 69.6
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 5.9e-106 388.3 266 77.1
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.9e-106 388.3 315 69.8
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 1.7e-105 386.7 267 76.8
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 1.7e-105 386.7 268 76.1
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 2.2e-105 386.3 313 67.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.2e-105 386.3 313 70.9
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 3.8e-105 385.6 266 74.1
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 3.8e-105 385.6 275 77.1
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 1.9e-104 383.3 272 77.6
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 2.5e-104 382.9 262 76.0
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 4.2e-104 382.1 267 76.4
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 7.2e-104 381.3 267 74.9
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.1e-103 379.8 266 77.4
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 1.0e-102 377.5 271 72.3
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 1.4e-102 377.1 322 64.6
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 1.8e-102 376.7 265 72.8
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 3.0e-102 375.9 269 74.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 8.8e-102 374.4 267 74.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.2e-101 374.0 269 74.0
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.4e-101 372.5 259 72.6
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 5.7e-101 371.7 287 68.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-100 370.5 272 71.3
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 1.3e-100 370.5 272 71.3
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 2.2e-100 369.8 270 70.4
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 2.8e-100 369.4 267 73.4
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 3.7e-100 369.0 269 72.1
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.4e-99 367.1 269 71.0
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 1.4e-99 367.1 265 72.8
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 2.4e-99 366.3 235 82.1
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 3.1e-99 365.9 268 71.6
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 4.1e-99 365.5 276 69.6
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 4.1e-99 365.5 269 73.2
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 7.0e-99 364.8 268 72.4
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 9.1e-99 364.4 275 70.9
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 9.1e-99 364.4 302 65.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 1.2e-98 364.0 270 71.1
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 8.6e-97 357.8 295 64.7
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 7.2e-96 354.8 320 62.8
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 5.2e-94 348.6 268 69.8
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 1.3e-92 344.0 274 66.4
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 4.9e-92 342.0 276 70.3
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 2.7e-90 336.3 271 66.8
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 4.5e-90 335.5 269 66.2
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 6.6e-89 331.6 268 70.1
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 3.3e-88 329.3 326 58.6
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 5.6e-88 328.6 272 65.8
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 4.7e-87 325.5 235 72.3
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 2.6e-85 319.7 304 59.5
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.8e-85 318.5 261 69.3
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 2.2e-84 316.6 271 68.6
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 1.1e-83 314.3 229 70.7
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 1.0e-81 307.8 320 61.2
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 7.3e-80 301.6 242 66.9
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 2.1e-79 300.1 259 60.6
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 2.8e-79 299.7 256 64.5
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 3.7e-76 289.3 240 67.1
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 6.4e-68 261.9 180 73.3
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 6.0e-66 255.4 184 73.9
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 3.0e-65 253.1 230 66.1
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.5e-64 250.8 306 49.0
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.8e-61 238.8 236 59.3
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 6.0e-58 228.8 172 67.4
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 3.9e-57 226.1 211 58.8
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 9.0e-46 188.3 184 60.9
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 9.3e-43 178.3 134 67.2
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.1e-42 177.2 265 47.9
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 3.3e-24 116.7 81 69.1
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 5.3e-22 109.4 143 46.2
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 8.8e-17 92.0 84 59.5
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 3.3e-16 90.1 84 58.3
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 1.3e-15 88.2 84 58.3
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 8.8e-09 65.5 66 53.0
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 3.3e-08 63.5 66 53.0


User provided reference genes

Program Settings