Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 1.6e-138 496.1 258 100.0
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 1.9e-59 233.4 264 55.7
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 1.3e-55 220.7 264 54.5
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.4e-54 217.2 269 52.0
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 1.4e-54 217.2 264 51.1
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.4e-54 217.2 258 53.1
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 2.5e-54 216.5 264 50.0
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 3.2e-54 216.1 278 49.6
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.6e-53 213.8 268 50.7
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.1e-53 213.4 268 50.4
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 1.3e-52 210.7 269 51.7
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 5.1e-52 208.8 261 52.5
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 8.7e-52 208.0 271 50.6
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 1.9e-51 206.8 259 51.7
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 1.9e-51 206.8 264 48.5
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 2.1e-50 203.4 268 49.6
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.7e-50 202.6 267 51.3
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 3.1e-49 199.5 266 50.8
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 6.9e-49 198.4 267 50.2
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 6.9e-49 198.4 287 45.6
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 6.9e-49 198.4 262 48.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 1.2e-48 197.6 271 47.6
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.0e-48 196.8 265 50.2
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.0e-48 196.8 263 48.3
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 1.0e-47 194.5 267 47.9
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 2.9e-47 193.0 364 42.6
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.1e-46 191.0 259 48.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 1.9e-46 190.3 265 49.1
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 4.2e-46 189.1 266 47.7
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 9.3e-46 188.0 262 49.2
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 2.7e-45 186.4 261 47.1
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-45 186.0 262 51.5
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.5e-45 186.0 262 51.5
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.0e-44 184.5 271 48.7
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 1.0e-44 184.5 261 46.0
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 2.3e-44 183.3 271 47.6
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.0e-44 183.0 259 44.8
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.0e-44 183.0 260 48.5
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.9e-44 182.6 264 45.1
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.9e-44 182.6 266 48.5
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 5.1e-44 182.2 261 46.7
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.1e-43 181.0 262 48.5
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 1.9e-43 180.3 263 49.0
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-43 179.5 261 50.6
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.3e-43 179.5 261 50.6
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 5.7e-43 178.7 268 45.9
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.3e-42 177.6 170 57.6
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 1.3e-42 177.6 269 43.1
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 1.6e-42 177.2 259 48.6
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 2.2e-42 176.8 272 44.1
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 2.8e-42 176.4 262 48.1
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 8.2e-42 174.9 260 47.7
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.2e-42 174.9 260 47.7
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 8.2e-42 174.9 262 44.3
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 2.4e-41 173.3 268 45.9
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-41 173.3 263 47.1
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.4e-41 173.3 263 46.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 3.1e-41 172.9 296 44.3
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 5.3e-41 172.2 262 45.4
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 6.9e-41 171.8 265 46.8
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 6.9e-41 171.8 270 46.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 9.0e-41 171.4 267 44.6
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.5e-40 170.6 285 42.8
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 1.5e-40 170.6 263 45.6
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 2.0e-40 170.2 271 45.8
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 2.0e-40 170.2 206 52.4
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 3.4e-40 169.5 274 45.6
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 3.4e-40 169.5 266 45.5
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 4.5e-40 169.1 271 42.4
TWI53G0899 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 4.5e-40 169.1 270 45.9
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 5.9e-40 168.7 261 44.1
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 5.9e-40 168.7 261 44.1
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.9e-40 168.7 265 45.7
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 7.7e-40 168.3 269 45.0
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 1.0e-39 167.9 269 45.4
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.3e-39 167.5 261 45.2
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 1.7e-39 167.2 264 44.7
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 2.9e-39 166.4 261 43.3
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.8e-39 166.0 258 44.6
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 5.0e-39 165.6 269 43.5
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 8.5e-39 164.9 275 44.7
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 1.4e-38 164.1 263 44.1
Lju124A33T34 Lonicera japonica HOM05D003503 ORTHO05D003885 2.5e-38 163.3 247 46.6
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 4.2e-38 162.5 263 44.5
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 4.2e-38 162.5 267 44.6
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 5.5e-38 162.2 269 44.6
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 7.2e-38 161.8 211 47.9
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-37 161.0 262 43.1
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 1.2e-37 161.0 262 43.1
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 2.7e-37 159.8 276 46.0
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.7e-37 159.8 269 41.3
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 3.6e-37 159.5 276 46.0
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 3.0e-36 156.4 266 43.2
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.0e-36 156.4 312 39.7
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 6.7e-36 155.2 264 42.8
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 8.8e-36 154.8 284 41.5
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 8.8e-36 154.8 263 42.2
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-35 154.1 260 43.5
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 2.0e-35 153.7 268 43.3
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 7.4e-35 151.8 266 44.0
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 7.4e-35 151.8 261 41.8
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 9.7e-35 151.4 262 43.9
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 9.7e-35 151.4 276 42.4
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 2.2e-34 150.2 266 43.2
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 2.2e-34 150.2 269 43.1
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 1.4e-33 147.5 261 41.8
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 2.4e-33 146.7 263 42.6
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 3.1e-33 146.4 209 49.3
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 4.1e-33 146.0 273 41.8
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 5.3e-33 145.6 277 40.8
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 5.3e-33 145.6 160 54.4
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 6.9e-33 145.2 271 44.3
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 9.1e-33 144.8 259 44.8
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 1.5e-32 144.1 268 42.9
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 1.5e-32 144.1 269 42.0
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 2.6e-32 143.3 266 42.1
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.6e-32 143.3 207 46.4
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 2.6e-32 143.3 264 41.3
TAR633G0309 Trochodendron aralioides HOM05D000064 ORTHO05D003885 2.6e-32 143.3 211 43.1
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.0e-31 141.4 162 50.6
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 2.2e-31 140.2 265 41.5
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.8e-31 139.4 244 43.9
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 5.0e-31 139.0 258 41.1
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 6.5e-31 138.7 269 42.0
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 6.5e-31 138.7 270 39.6
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 8.5e-31 138.3 259 42.1
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 1.1e-30 137.9 269 41.6
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-30 137.1 262 43.5
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 2.7e-29 133.3 249 41.0
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 3.6e-29 132.9 175 48.0
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 4.7e-29 132.5 258 41.5
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.8e-28 130.6 267 39.3
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 2.3e-28 130.2 259 40.5
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 3.0e-28 129.8 284 38.7
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 3.0e-28 129.8 260 42.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 3.9e-28 129.4 259 40.2
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 8.8e-28 128.3 285 37.9
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 1.1e-27 127.9 263 39.9
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 4.4e-27 125.9 258 40.3
arahy.Tifrunner.gnm1.ann1.E4BIS3 Arachis hypogaea HOM05D003503 ORTHO05D003885 2.2e-26 123.6 270 41.1
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 1.1e-25 121.3 258 39.5
arahy.Tifrunner.gnm1.ann1.P0WGR4 Arachis hypogaea HOM05D003503 ORTHO05D003885 1.4e-25 120.9 264 39.8
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.1e-25 119.8 262 37.0
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.0e-25 118.6 258 37.6
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 1.2e-24 117.9 258 39.9
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 2.0e-24 117.1 256 39.5
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.6e-24 116.7 267 36.0
PGR031G2261 Punica granatum HOM05D003503 ORTHO05D003885 1.0e-23 114.8 119 56.3
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 1.7e-23 114.0 273 33.7
Sc19g0006890 Simmondsia chinensis HOM05D003503 ORTHO05D003885 8.5e-23 111.7 270 38.1
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-22 110.2 255 35.7
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 5.5e-22 109.0 265 35.8
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 9.4e-22 108.2 255 36.9
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 1.6e-21 107.5 266 34.2
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 2.1e-21 107.1 262 35.5
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.4e-20 104.4 256 36.7
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 2.3e-20 103.6 262 37.4
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 1.1e-19 101.3 158 43.7
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 1.1e-19 101.3 117 53.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.1e-19 101.3 263 35.0
TAR629G2270 Trochodendron aralioides HOM05D003503 ORTHO05D003885 1.1e-19 101.3 137 43.1
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 2.4e-17 93.6 231 36.8
AUR62008542 Chenopodium quinoa HOM05D003503 ORTHO05D003885 7.0e-17 92.0 250 34.4
Ah.02g114090 Amaranthus hybridus HOM05D000622 ORTHO05D000475 2.9e-15 86.7 254 36.2
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 3.2e-14 83.2 94 56.4
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 2.1e-13 80.5 105 50.5
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.7e-13 80.1 261 31.4
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 4.7e-13 79.3 259 32.0
unitig_749.g14030 Utricularia gibba HOM05D003503 ORTHO05D003885 5.2e-12 75.9 260 31.9
C07p14610 Brassica napus HOM05D003503 ORTHO05D003885 1.2e-11 74.7 162 36.4
C04p28750 Brassica napus HOM05D003503 ORTHO05D003885 1.3e-10 71.2 95 45.3
MBI04_g14263_MAGBIO Magnolia biondii HOM05D000102 ORTHO05D000138 1.7e-10 70.9 250 31.6
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 1.1e-09 68.2 67 55.2
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 5.4e-09 65.9 267 29.6
Os04g0472700 Oryza sativa ssp. japonica HOM05D003503 ORTHO05D003885 1.2e-08 64.7 235 28.9
BolC7t41959H Brassica oleracea HOM05D003503 ORTHO05D003885 2.0e-08 63.9 127 37.0
RcHm_v2.0_Chr7g0219161 Rosa chinensis HOM05D003503 ORTHO05D003885 2.7e-08 63.5 103 42.7
Actinidia09377 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.5e-08 62.8 61 50.8
MBI01_g36437_MAGBIO Magnolia biondii HOM05D003503 ORTHO05D003885 1.0e-07 61.6 229 34.5
FAN05G3047 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.8e-07 59.7 85 45.9
unitig_26.g8909 Utricularia gibba HOM05D003503 ORTHO05D003885 5.0e-07 59.3 136 41.2
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 6.5e-07 58.9 77 42.9
Zm00001eb245710 Zea mays HOM05D020767 ORTHO05D003885 1.1e-06 58.2 187 31.6
HPP92_015769 Vanilla planifolia HOM05D020767 ORTHO05D003885 1.9e-06 57.4 106 40.6


User provided reference genes

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