Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1112 Punica granatum HOM05D004429 ORTHO05D005583 4.3e-116 421.4 223 100.0
Prupe.6G250000 Prunus persica HOM05D004429 ORTHO05D005583 2.0e-73 279.6 215 69.8
QL05p010485 Quercus lobata HOM05D004429 ORTHO05D005583 3.3e-71 272.3 217 74.2
CiPaw.10G142900 Carya illinoinensis HOM05D004429 ORTHO05D005583 1.2e-70 270.4 217 68.2
Dinv37207 Davidia involucrata HOM05D004429 ORTHO05D005583 1.6e-70 270.0 215 68.8
QL07p047160 Quercus lobata HOM05D004429 ORTHO05D005583 1.6e-70 270.0 217 74.7
TWI53G0393 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 6.1e-70 268.1 216 69.0
Manes.12G146400 Manihot esculenta HOM05D004429 ORTHO05D005583 4.4e-68 261.9 216 67.6
Thecc.05G044800 Theobroma cacao HOM05D004429 ORTHO05D005583 2.2e-67 259.6 216 67.1
FAN09G1286 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.9e-67 259.2 219 67.6
RcHm_v2.0_Chr3g0467391 Rosa chinensis HOM05D004429 ORTHO05D005583 3.7e-67 258.8 221 66.5
ClCG10G020910 Citrullus lanatus HOM05D004429 ORTHO05D005583 1.4e-66 256.9 220 66.8
COL.COLO4_14858 Corchorus olitorius HOM05D004429 ORTHO05D005583 2.4e-66 256.1 225 65.8
FvH4_6g14340 Fragaria vesca HOM05D004429 ORTHO05D005583 2.4e-66 256.1 220 66.8
FAN14G5191 Fragaria x ananassa HOM05D004429 ORTHO05D005583 2.4e-66 256.1 220 66.8
FAN02G4491 Fragaria x ananassa HOM05D004429 ORTHO05D005583 3.2e-66 255.8 220 66.8
CSS0012060 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 4.1e-66 255.4 216 63.9
TWI74G1196 Tripterygium wilfordii HOM05D004429 ORTHO05D005583 4.1e-66 255.4 216 66.7
GSVIVG01025623001 Vitis vinifera HOM05D004429 ORTHO05D005583 4.1e-66 255.4 217 64.1
AUR62013875 Chenopodium quinoa HOM05D004429 ORTHO05D005583 9.2e-66 254.2 220 63.2
Hma1.2p1_0350F.1_g132400 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-65 252.7 216 65.3
Hma1.2p1_1065F.1_g253770 Hydrangea macrophylla HOM05D004429 ORTHO05D005583 2.7e-65 252.7 216 65.3
MD12G1138000 Malus domestica HOM05D004429 ORTHO05D005583 3.5e-65 252.3 216 66.7
Eucgr.K03161 Eucalyptus grandis HOM05D004429 ORTHO05D005583 4.6e-65 251.9 224 66.1
Lj2C100T9 Lonicera japonica HOM05D004429 ORTHO05D005583 1.3e-64 250.4 212 63.7
Duzib106G0640 Durio zibethinus HOM05D004429 ORTHO05D005583 1.7e-64 250.0 217 65.4
FAN05G1703 Fragaria x ananassa HOM05D004429 ORTHO05D005583 6.6e-64 248.1 211 66.8
MD04G1120700 Malus domestica HOM05D004429 ORTHO05D005583 8.6e-64 247.7 221 64.7
Potri.006G082400 Populus trichocarpa HOM05D004429 ORTHO05D005583 8.6e-64 247.7 219 65.8
Lsat_1_v5_gn_6_32421 Lactuca sativa HOM05D004429 ORTHO05D005583 1.5e-63 246.9 226 63.7
Sabra06G0062200 Salix brachista HOM05D004429 ORTHO05D005583 1.5e-63 246.9 211 68.2
EL10Ac1g02077 Beta vulgaris HOM05D004429 ORTHO05D005583 1.9e-63 246.5 215 64.2
Ciclev10013673m.g Citrus clementina HOM05D004429 ORTHO05D005583 1.9e-63 246.5 219 68.0
Gohir.D11G344900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.9e-63 246.5 216 65.3
Gorai.007G375300 Gossypium raimondii HOM05D004429 ORTHO05D005583 1.9e-63 246.5 216 65.3
Gohir.A11G326000 Gossypium hirsutum HOM05D004429 ORTHO05D005583 5.6e-63 245.0 216 64.8
Sc20g0004500 Simmondsia chinensis HOM05D004429 ORTHO05D005583 1.2e-62 243.8 215 62.8
Cc06_g03000 Coffea canephora HOM05D004429 ORTHO05D005583 2.8e-62 242.7 225 64.4
Sed0001771 Sechium edule HOM05D004429 ORTHO05D005583 4.7e-62 241.9 221 64.3
Duzib128G1460 Durio zibethinus HOM05D004429 ORTHO05D005583 6.2e-62 241.5 218 64.2
CSS0043629 Camellia sinensis var. sinensis HOM05D004429 ORTHO05D005583 8.0e-62 241.1 220 60.5
MELO3C009280.2 Cucumis melo HOM05D004429 ORTHO05D005583 1.2e-60 237.3 218 63.3
Sed0027367 Sechium edule HOM05D004429 ORTHO05D005583 2.6e-60 236.1 206 66.5
CAN.G97.23 Capsicum annuum HOM05D004429 ORTHO05D005583 3.4e-60 235.7 215 60.5
THA.LOC104806580 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.4e-60 235.7 216 62.0
THA.LOC104823424 Tarenaya hassleriana HOM05D004429 ORTHO05D005583 3.4e-60 235.7 216 60.2
CsaV3_3G035100 Cucumis sativus L. HOM05D004429 ORTHO05D005583 5.8e-60 235.0 219 63.5
Oeu060052.2 Olea europaea HOM05D004429 ORTHO05D005583 1.7e-59 233.4 222 60.4
BraA09t40127Z Brassica rapa HOM05D004429 ORTHO05D005583 2.2e-59 233.0 215 60.5
Sopen10g034060 Solanum pennellii HOM05D004429 ORTHO05D005583 2.2e-59 233.0 214 60.7
PGSC0003DMG400008931 Solanum tuberosum HOM05D004429 ORTHO05D005583 2.9e-59 232.6 225 63.1
Gohir.A09G158500 Gossypium hirsutum HOM05D004429 ORTHO05D005583 6.4e-59 231.5 219 60.7
SalBow3G1038 Salvia bowleyana HOM05D004429 ORTHO05D005583 1.1e-58 230.7 212 60.4
Aa31LG5G22900 Aethionema arabicum HOM05D004429 ORTHO05D005583 1.9e-58 229.9 219 58.4
PSO339G1692 Papaver somniferum HOM05D004429 ORTHO05D005583 1.9e-58 229.9 225 58.7
Solyc10g084620.3 Solanum lycopersicum HOM05D004429 ORTHO05D005583 2.4e-58 229.6 213 60.6
Gorai.006G175400 Gossypium raimondii HOM05D004429 ORTHO05D005583 3.2e-58 229.2 219 60.3
HanXRQChr14g0459271 Helianthus annuus HOM05D004429 ORTHO05D005583 3.2e-58 229.2 224 57.6
DCAR_014836 Daucus carota HOM05D004429 ORTHO05D005583 4.1e-58 228.8 217 62.2
PSO648G0090 Papaver somniferum HOM05D004429 ORTHO05D005583 4.1e-58 228.8 225 58.2
A09p46640 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-57 227.3 215 59.5
Gohir.D09G153900 Gossypium hirsutum HOM05D004429 ORTHO05D005583 1.2e-57 227.3 219 60.3
Oeu024364.1 Olea europaea HOM05D004429 ORTHO05D005583 1.6e-57 226.9 224 59.8
CARHR163560 Cardamine hirsuta HOM05D004429 ORTHO05D005583 2.0e-57 226.5 217 59.9
Thhalv10010743m.g Eutrema salsugineum HOM05D004429 ORTHO05D005583 2.0e-57 226.5 216 60.6
Lsat_1_v5_gn_2_110581 Lactuca sativa HOM05D004429 ORTHO05D005583 2.7e-57 226.1 218 59.6
BolC8t50499H Brassica oleracea HOM05D004429 ORTHO05D005583 3.5e-57 225.7 217 59.4
Lalb_Chr20g0113181 Lupinus albus HOM05D004429 ORTHO05D005583 4.6e-57 225.3 222 60.8
Nitab4.5_0000216g0050 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.0e-56 224.2 209 64.6
Sp5g08720 Schrenkiella parvula HOM05D004429 ORTHO05D005583 1.3e-56 223.8 215 60.9
Solyc09g010390.2 Solanum lycopersicum HOM05D004429 ORTHO05D005583 1.3e-56 223.8 227 60.4
Carub.0005s2021 Capsella rubella HOM05D004429 ORTHO05D005583 1.7e-56 223.4 217 59.4
Ah.01g015860 Amaranthus hybridus HOM05D004429 ORTHO05D005583 3.9e-56 222.2 223 58.7
AL5G34580 Arabidopsis lyrata HOM05D004429 ORTHO05D005583 8.6e-56 221.1 217 60.8
AUR62036719 Chenopodium quinoa HOM05D004429 ORTHO05D005583 1.1e-55 220.7 221 57.0
AT3G53630 Arabidopsis thaliana HOM05D004429 ORTHO05D005583 1.9e-55 219.9 216 59.7
C08p28960 Brassica napus HOM05D004429 ORTHO05D005583 2.5e-55 219.5 217 58.1
Aa31LG10G9470 Aethionema arabicum HOM05D004429 ORTHO05D005583 4.3e-55 218.8 208 58.2
BcaB01g00258 Brassica carinata HOM05D004429 ORTHO05D005583 4.3e-55 218.8 215 57.7
BcaC07g39724 Brassica carinata HOM05D004429 ORTHO05D005583 5.6e-55 218.4 215 58.1
BraA04t16299Z Brassica rapa HOM05D001071 ORTHO05D005583 5.6e-55 218.4 217 59.4
CiPaw.09G188700 Carya illinoinensis HOM05D004429 ORTHO05D005583 7.3e-55 218.0 216 56.9
A04p05960 Brassica napus HOM05D004429 ORTHO05D005583 1.2e-54 217.2 217 59.4
Migut.J00365 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.6e-54 216.9 238 53.8
MSTRG.19104 Avicennia marina HOM05D004429 ORTHO05D005583 2.1e-54 216.5 212 60.8
Peaxi162Scf00604g00415 Petunia axillaris HOM05D004429 ORTHO05D005583 3.6e-54 215.7 218 61.0
SGA_v2.0_scaffold126G33824 Striga asiatica HOM05D004429 ORTHO05D005583 3.6e-54 215.7 232 57.3
MBI14_g36720_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 4.7e-54 215.3 219 57.5
BcaB02g08517 Brassica carinata HOM05D004429 ORTHO05D005583 3.1e-53 212.6 212 58.0
CAN.G688.9 Capsicum annuum HOM05D004429 ORTHO05D005583 3.1e-53 212.6 224 56.7
Nn2g10451 Nelumbo nucifera HOM05D004429 ORTHO05D005583 4.0e-53 212.2 228 60.5
TAR369G0217 Trochodendron aralioides HOM05D004429 ORTHO05D005583 8.9e-53 211.1 216 56.9
C04p38880 Brassica napus HOM05D001071 ORTHO05D005583 2.0e-52 209.9 217 58.1
Sopen09g005130 Solanum pennellii HOM05D004429 ORTHO05D005583 3.4e-52 209.1 246 55.3
Nn2g12909 Nelumbo nucifera HOM05D004429 ORTHO05D005583 5.8e-52 208.4 216 56.9
MSTRG.5688 Avicennia marina HOM05D004429 ORTHO05D005583 7.5e-52 208.0 215 56.3
BcaC02g09143 Brassica carinata HOM05D004429 ORTHO05D005583 7.5e-52 208.0 217 59.0
BolC4t25460H Brassica oleracea HOM05D004429 ORTHO05D005583 7.5e-52 208.0 217 59.0
ATR0222G016 Amborella trichopoda HOM05D004429 ORTHO05D005583 4.9e-51 205.3 218 54.6
Glyma.03G172600 Glycine max HOM05D004429 ORTHO05D005583 8.3e-51 204.5 223 56.5
ECA233G0195 Erigeron canadensis HOM05D004429 ORTHO05D005583 1.4e-50 203.8 206 58.3
Glyma.19G173500 Glycine max HOM05D004429 ORTHO05D005583 1.4e-50 203.8 221 56.1
Nitab4.5_0012047g0010 Nicotiana tabacum HOM05D004429 ORTHO05D005583 1.9e-50 203.4 203 59.6
arahy.Tifrunner.gnm1.ann1.2JSS8R Arachis hypogaea HOM05D004429 ORTHO05D005583 3.2e-50 202.6 231 54.5
Phvul.001G170200 Phaseolus vulgaris HOM05D004429 ORTHO05D005583 5.4e-50 201.8 222 55.9
PGSC0003DMG400010996 Solanum tuberosum HOM05D004429 ORTHO05D005583 9.2e-50 201.1 301 48.2
Nitab4.5_0000202g0130 Nicotiana tabacum HOM05D004429 ORTHO05D005583 2.7e-49 199.5 201 60.2
SHI12608 Sapria himalayana HOM05D004429 ORTHO05D000003 6.6e-48 194.9 223 52.0
Atru.chr8.1930 Acer truncatum HOM05D004429 ORTHO05D005583 4.3e-47 192.2 163 65.6
Nitab4.5_0002077g0140 Nicotiana tabacum HOM05D004429 ORTHO05D005583 4.3e-47 192.2 165 66.1
Aqoxy2G02012 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 7.3e-47 191.4 221 52.9
CDE04G3062 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 1.8e-45 186.8 206 56.3
Migut.L01619 Erythranthe guttata HOM05D004429 ORTHO05D005583 1.8e-45 186.8 207 53.1
VMungo1383G1968 Vigna mungo HOM05D004429 ORTHO05D005583 2.9e-43 179.5 200 54.5
unitig_578.g15706 Utricularia gibba HOM05D004429 ORTHO05D005583 2.4e-42 176.4 218 48.2
Lj1g0006432 Lotus japonicus HOM05D004429 ORTHO05D005583 4.6e-41 172.2 224 51.3
COL.COLO4_24433 Corchorus olitorius HOM05D004429 ORTHO05D005583 5.6e-39 165.2 145 62.1
HPP92_001685 Vanilla planifolia HOM05D004429 ORTHO05D005583 6.2e-38 161.8 213 46.0
Atru.chr7.899 Acer truncatum HOM05D004429 ORTHO05D005583 1.5e-36 157.1 115 69.6
SEGI_33598 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.0e-36 156.8 217 44.7
unitig_26.g9203 Utricularia gibba HOM05D004429 ORTHO05D005583 2.6e-36 156.4 155 55.5
Zm00001eb012690 Zea mays HOM05D004429 ORTHO05D005583 1.9e-34 150.2 220 41.8
ATR0222G031 Amborella trichopoda HOM05D004429 ORTHO05D005583 2.4e-34 149.8 195 46.2
Rhsim05G0188000 Rhododendron simsii HOM05D004429 ORTHO05D005583 7.1e-34 148.3 149 59.1
SGA_v2.0_scaffold87G27174 Striga asiatica HOM05D004429 ORTHO05D005583 1.2e-33 147.5 156 53.8
TPR.G11987 Trifolium pratense HOM05D004429 ORTHO05D005583 1.6e-33 147.1 208 45.7
Medtr7g099970 Medicago truncatula HOM05D004429 ORTHO05D005583 7.8e-33 144.8 215 41.9
Ca_08790_v3 Cicer arietinum L. HOM05D004429 ORTHO05D005583 7.3e-31 138.3 201 42.3
Os03g0279600 Oryza sativa ssp. japonica HOM05D004429 ORTHO05D005583 1.3e-30 137.5 221 41.2
Aqoxy3G04288 Aquilegia oxysepala HOM05D004429 ORTHO05D005583 3.6e-30 136.0 131 54.2
SEGI_08514 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 2.4e-29 133.3 149 48.3
QL01p033097 Quercus lobata HOM05D004429 ORTHO05D005583 1.5e-28 130.6 141 48.2
Haze_24041 Corylus avellana HOM05D004429 ORTHO05D005583 3.4e-28 129.4 123 49.6
DCAR_017884 Daucus carota HOM05D004429 ORTHO05D005583 2.9e-27 126.3 213 40.4
MBI18_g47300_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 3.8e-27 125.9 133 55.6
MBI06_g43519_MAGBIO Magnolia biondii HOM05D004429 ORTHO05D005583 2.4e-26 123.2 133 54.9
Actinidia05294 Actinidia chinensis HOM05D004429 ORTHO05D005583 9.3e-26 121.3 97 61.9
EL10Ac5g11422 Beta vulgaris HOM05D004429 ORTHO05D005583 2.1e-25 120.2 117 59.0
Atru.chr3.3828 Acer truncatum HOM05D004429 ORTHO05D005583 2.7e-25 119.8 125 46.4
Ciclev10029396m.g Citrus clementina HOM05D004429 ORTHO05D005583 7.9e-25 118.2 139 46.8
CBR_g20121 Chara braunii HOM05D004429 ORTHO05D005583 1.3e-24 117.5 84 57.1
EL10Ac9g21191 Beta vulgaris HOM05D006860 ORTHO05D009547 2.5e-23 113.2 115 58.3
Pp3c15_19860 Physcomitrium patens HOM05D004429 ORTHO05D005583 3.3e-23 112.8 137 40.9
Mapoly0066s0057 Marchantia polymorpha HOM05D004429 ORTHO05D005583 9.6e-23 111.3 146 43.8
SMO348G0079 Selaginella moellendorffii HOM05D004429 ORTHO05D005583 4.8e-22 109.0 140 40.7
Psat3g048680 Pisum sativum HOM05D004429 ORTHO05D005583 1.4e-21 107.5 169 38.5
SEGI_24259 Sequoiadendron giganteum HOM05D004429 ORTHO05D005583 1.4e-21 107.5 137 44.5
Pp3c4_10520 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.0e-20 103.6 90 51.1
Pp3c9_19700 Physcomitrium patens HOM05D004429 ORTHO05D005583 2.6e-20 103.2 137 38.0
CDE07G1713 Ceratophyllum demersum HOM05D004429 ORTHO05D005583 2.9e-19 99.8 203 36.5
TPR.G8932 Trifolium pratense HOM05D004429 ORTHO05D005583 1.9e-18 97.1 101 48.5
Sopen04g022580 Solanum pennellii HOM05D004429 ORTHO05D005583 1.9e-15 87.0 197 38.6
TPR.G14114 Trifolium pratense HOM05D004429 ORTHO05D005583 2.5e-15 86.7 122 42.6
SGA_v2.0_scaffold61G21134 Striga asiatica HOM05D004429 ORTHO05D005583 1.4e-13 80.9 178 36.5
SGA_v2.0_scaffold32G13323 Striga asiatica HOM05D004429 ORTHO05D005583 9.0e-13 78.2 110 48.2
BolC6t37347H Brassica oleracea HOM05D004429 ORTHO05D021447 6.0e-09 65.5 75 53.3
C06p21580 Brassica napus HOM05D004429 ORTHO05D021447 3.0e-08 63.2 82 48.8
CiPaw.05G236000 Carya illinoinensis HOM05D004429 ORTHO05D005583 2.1e-06 57.0 86 47.7


User provided reference genes

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