Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 3.4e-101 371.7 193 100.0
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 1.2e-69 266.9 156 84.0
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 2.6e-69 265.8 155 84.5
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.5e-69 265.0 155 84.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 4.5e-69 265.0 155 84.5
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 1.0e-68 263.8 158 81.0
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.4e-67 260.0 166 75.9
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 1.9e-67 259.6 154 79.9
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 3.2e-67 258.8 154 83.1
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 4.2e-67 258.5 155 81.3
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 5.5e-67 258.1 154 83.8
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 7.2e-67 257.7 159 81.1
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 9.4e-67 257.3 154 83.1
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 9.4e-67 257.3 155 81.9
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 2.7e-66 255.8 154 79.9
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 2.7e-66 255.8 155 81.3
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 3.6e-66 255.4 159 80.5
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 4.7e-66 255.0 154 81.2
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 7.9e-66 254.2 152 83.6
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 1.4e-65 253.4 154 81.8
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 2.3e-65 252.7 157 78.3
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 3.9e-65 251.9 154 81.2
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 3.9e-65 251.9 154 80.5
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 3.9e-65 251.9 151 84.1
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 5.1e-65 251.5 152 80.3
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 5.1e-65 251.5 159 78.0
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 8.8e-65 250.8 156 78.2
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 8.8e-65 250.8 156 78.2
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 2.6e-64 249.2 154 79.2
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 3.3e-64 248.8 155 78.7
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 3.3e-64 248.8 146 84.9
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 4.4e-64 248.4 158 75.9
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.4e-64 247.7 155 78.1
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 7.4e-64 247.7 155 78.1
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 9.7e-64 247.3 156 76.9
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 1.3e-63 246.9 154 78.6
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 1.3e-63 246.9 162 76.5
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.7e-63 246.5 160 75.0
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.7e-63 246.5 160 76.9
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 2.2e-63 246.1 162 76.5
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 2.8e-63 245.7 168 75.0
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 2.8e-63 245.7 161 75.8
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 3.7e-63 245.4 154 78.6
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 4.8e-63 245.0 149 81.2
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 4.8e-63 245.0 159 74.8
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 4.8e-63 245.0 154 77.9
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 6.3e-63 244.6 160 75.0
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 8.2e-63 244.2 164 75.0
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 8.2e-63 244.2 160 74.4
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 8.2e-63 244.2 160 74.4
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 8.2e-63 244.2 160 75.0
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 1.1e-62 243.8 151 78.1
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 1.4e-62 243.4 153 79.1
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 2.4e-62 242.7 161 75.2
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.4e-62 242.7 160 75.6
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 4.1e-62 241.9 159 74.8
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 4.1e-62 241.9 158 74.1
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 7.0e-62 241.1 158 75.9
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.0e-61 239.6 154 75.3
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 2.0e-61 239.6 157 77.1
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.0e-61 239.6 148 77.7
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 3.5e-61 238.8 146 80.1
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 4.5e-61 238.4 143 82.5
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 5.9e-61 238.0 155 76.1
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 1.0e-60 237.3 158 75.9
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.0e-60 237.3 157 75.8
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.0e-60 237.3 160 75.6
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 2.2e-60 236.1 152 76.3
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 2.2e-60 236.1 155 75.5
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.2e-60 236.1 177 70.1
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 2.2e-60 236.1 148 79.1
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.2e-60 236.1 158 74.7
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 2.2e-60 236.1 158 74.7
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 2.9e-60 235.7 159 73.6
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 3.8e-60 235.3 167 72.5
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 3.8e-60 235.3 154 74.7
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 5.0e-60 235.0 148 79.7
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 8.5e-60 234.2 148 77.7
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 8.5e-60 234.2 158 74.7
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-59 233.8 158 74.1
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 1.1e-59 233.8 158 74.7
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 1.5e-59 233.4 158 72.8
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.9e-59 233.0 158 72.8
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 1.9e-59 233.0 158 74.1
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 1.9e-59 233.0 158 74.1
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 2.5e-59 232.6 158 72.8
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 2.5e-59 232.6 159 73.0
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 3.2e-59 232.3 155 73.5
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 5.5e-59 231.5 157 71.3
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 3.6e-58 228.8 202 61.4
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.6e-58 228.8 142 78.9
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 5.2e-57 224.9 148 75.0
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 9.7e-56 220.7 168 69.0
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 2.6e-53 212.6 179 63.1
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 3.5e-53 212.2 158 68.4
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.0e-48 196.4 163 62.6
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 4.4e-48 195.3 156 59.6
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.9e-43 179.9 154 62.3
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.6e-42 176.8 116 75.0
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 3.6e-42 175.6 158 55.1
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 1.8e-41 173.3 110 79.1
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 1.2e-40 170.6 90 90.0
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.7e-40 168.3 90 86.7
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.3e-39 167.2 180 55.6
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 1.4e-38 163.7 157 50.3
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 7.7e-37 157.9 112 70.5
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 5.0e-36 155.2 266 40.6
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 4.2e-35 152.1 154 50.0
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 4.7e-34 148.7 152 51.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 8.0e-34 147.9 154 48.1
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 8.0e-26 121.3 83 73.5
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 3.1e-25 119.4 137 42.3
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.2e-18 97.4 74 66.2
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.0e-17 92.4 63 69.8
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 1.9e-14 83.6 64 65.6
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 9.2e-14 81.3 55 72.7
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 2.1e-13 80.1 92 44.6
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 2.1e-13 80.1 45 82.2
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 4.6e-13 79.0 49 73.5
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 5.1e-12 75.5 139 36.0
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 2.1e-10 70.1 37 89.2
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 1.4e-09 67.4 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 4.4e-08 62.4 57 59.6


User provided reference genes

Program Settings