Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 3.5e-95 351.7 187 100.0
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 1.5e-29 133.7 175 53.1
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.6e-29 132.9 173 49.7
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 5.8e-29 131.7 165 52.7
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.3e-28 130.6 176 51.7
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 2.2e-28 129.8 193 48.7
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 6.4e-28 128.3 165 51.5
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 2.4e-27 126.3 176 50.6
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.4e-27 126.3 168 51.8
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 4.1e-27 125.6 169 52.7
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 9.2e-27 124.4 173 50.3
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 9.2e-27 124.4 177 49.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 4.6e-26 122.1 165 48.5
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.0e-25 120.9 176 47.2
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 1.0e-25 120.9 169 47.9
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 1.0e-25 120.9 169 50.3
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 1.3e-25 120.6 174 48.9
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 2.3e-25 119.8 173 48.0
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 2.3e-25 119.8 192 47.4
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.6e-25 118.2 172 45.9
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 7.3e-24 114.8 166 47.0
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 2.1e-23 113.2 163 49.7
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.6e-23 112.5 170 47.6
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 1.1e-22 110.9 172 50.0
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.4e-22 110.5 161 49.1
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.4e-22 110.5 196 44.4
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.3e-22 109.8 179 46.4
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 3.1e-22 109.4 194 43.8
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 5.2e-22 108.6 166 45.2
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 1.5e-21 107.1 188 44.7
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 1.5e-21 107.1 170 46.5
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 2.0e-21 106.7 168 46.4
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 2.0e-21 106.7 164 47.0
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 2.0e-21 106.7 164 47.0
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 3.4e-21 105.9 188 44.1
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 3.4e-21 105.9 168 48.8
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 9.8e-21 104.4 170 48.8
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 2.2e-20 103.2 134 48.5
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 2.9e-20 102.8 130 47.7
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.7e-20 102.4 164 42.1
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 3.7e-20 102.4 167 45.5
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 4.9e-20 102.1 100 60.0
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 4.9e-20 102.1 176 39.2
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 6.4e-20 101.7 165 45.5
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 8.3e-20 101.3 170 40.0
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.4e-19 100.5 188 42.6
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.9e-19 100.1 170 41.8
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 2.4e-19 99.8 177 43.5
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 7.1e-19 98.2 105 59.0
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 4.6e-18 95.5 174 44.3
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 1.7e-17 93.6 177 41.8
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 3.9e-17 92.4 169 44.4
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 5.1e-17 92.0 164 43.3
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 6.6e-17 91.7 181 46.4
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 6.6e-17 91.7 147 47.6
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 3.3e-16 89.4 171 44.4
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 5.6e-16 88.6 104 47.1
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 1.2e-15 87.4 161 44.7
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 2.8e-15 86.3 173 41.0
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 3.6e-15 85.9 105 47.6
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.1e-14 84.3 151 44.4
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 2.3e-14 83.2 190 36.8
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 3.1e-14 82.8 113 46.0
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 4.0e-14 82.4 141 46.8
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 8.9e-14 81.3 129 44.2
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 1.5e-13 80.5 144 42.4
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.6e-13 79.7 188 37.2
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 4.4e-13 79.0 147 44.2
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 5.8e-13 78.6 113 48.7
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 7.6e-13 78.2 135 41.5
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 7.6e-13 78.2 165 44.2
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.7e-12 77.0 188 36.7
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 6.4e-12 75.1 138 44.9
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 6.4e-12 75.1 154 39.6
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.4e-12 75.1 153 41.2
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 6.4e-12 75.1 119 42.0
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 8.4e-12 74.7 165 38.8
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.1e-11 74.3 139 40.3
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.1e-11 74.3 67 61.2
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.4e-11 73.9 144 45.8
Haze_23331 Corylus avellana HOM05D021165 ORTHO05D006261 4.1e-11 72.4 109 37.6
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 5.4e-11 72.0 89 47.2
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 1.2e-10 70.9 137 40.1
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 2.1e-10 70.1 140 40.7
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 2.1e-10 70.1 134 44.8
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 3.5e-10 69.3 72 62.5
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 3.5e-10 69.3 70 64.3
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 6.0e-10 68.6 135 45.9
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.3e-09 67.4 101 40.6
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 3.0e-09 66.2 140 41.4
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 3.9e-09 65.9 88 46.6
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 5.1e-09 65.5 158 39.9
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 6.6e-09 65.1 171 35.1
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 1.5e-08 63.9 147 36.1
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 1.5e-08 63.9 87 47.1
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 1.9e-08 63.5 95 41.1
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 2.5e-08 63.2 66 53.0
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 3.3e-08 62.8 146 37.0
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 4.3e-08 62.4 147 36.1
QL01p011372 Quercus lobata HOM05D021165 ORTHO05D006261 4.3e-08 62.4 107 38.3
QL01p011630 Quercus lobata HOM05D021165 ORTHO05D006261 4.3e-08 62.4 107 38.3
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 4.3e-08 62.4 59 55.9
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 4.3e-08 62.4 135 40.7
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 4.3e-08 62.4 102 42.2
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 5.6e-08 62.0 58 56.9
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 7.3e-08 61.6 147 35.4
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 7.3e-08 61.6 68 55.9
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 1.6e-07 60.5 63 61.9
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 1.6e-07 60.5 74 50.0
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.1e-07 60.1 58 56.9
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 2.1e-07 60.1 130 35.4
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 2.1e-07 60.1 139 36.7
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 2.1e-07 60.1 77 53.2
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 2.1e-07 60.1 123 39.0
Cfa009970 Carpinus fangiana HOM05D021165 ORTHO05D006261 2.8e-07 59.7 80 43.8
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 4.7e-07 58.9 129 35.7
Atru.chr5.3444 Acer truncatum HOM05D007970 ORTHO05D009943 8.1e-07 58.2 113 41.6
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 1.1e-06 57.8 129 36.4
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.1e-06 57.8 129 36.4
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.4e-06 57.4 99 39.4
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 1.4e-06 57.4 129 35.7
Sabra04G0135800 Salix brachista HOM05D065446 ORTHO05D050541 1.4e-06 57.4 122 35.2
Duzib248G1052 Durio zibethinus HOM05D007970 ORTHO05D009943 1.8e-06 57.0 77 46.8
SalBow1G1176 Salvia bowleyana HOM05D007970 ORTHO05D009943 2.4e-06 56.6 91 42.9
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 3.1e-06 56.2 87 44.8
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 3.1e-06 56.2 85 45.9
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 3.1e-06 56.2 62 56.5
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 3.1e-06 56.2 103 39.8
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 4.0e-06 55.8 140 38.6
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 4.0e-06 55.8 113 43.4
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 4.0e-06 55.8 67 53.7
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 5.2e-06 55.5 97 41.2
MD10G1128300 Malus domestica HOM05D007970 ORTHO05D009943 5.2e-06 55.5 107 38.3
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.2e-06 55.5 75 45.3
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 6.8e-06 55.1 68 54.4
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 6.8e-06 55.1 97 40.2
BolC9t59798H Brassica oleracea HOM05D010494 ORTHO05D006261 8.9e-06 54.7 150 30.7
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 8.9e-06 54.7 58 56.9


User provided reference genes

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