Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.1e-231 806.2 407 100.0
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 3.5e-164 582.0 415 74.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.7e-163 579.7 411 72.5
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.9e-163 578.6 381 77.2
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.5e-162 575.9 409 73.3
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 4.7e-161 571.6 385 75.3
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.1e-160 570.5 383 77.0
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 1.1e-160 570.5 402 72.6
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 3.1e-160 568.9 433 68.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.1e-160 568.9 388 75.3
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.2e-159 567.0 406 73.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.2e-159 567.0 404 73.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.5e-159 566.6 411 72.7
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.5e-159 566.6 381 76.1
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 3.4e-159 565.5 413 72.6
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 4.4e-159 565.1 387 75.5
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 4.4e-159 565.1 374 76.2
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 2.2e-158 562.8 405 72.1
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.9e-158 561.6 392 73.2
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.9e-157 559.7 408 70.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.4e-157 559.3 411 72.3
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 3.2e-157 558.9 433 67.4
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 3.2e-157 558.9 402 73.1
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 4.2e-157 558.5 409 71.9
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.6e-156 556.6 406 70.4
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 6.0e-156 554.7 378 75.7
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.0e-155 553.9 421 68.9
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.3e-155 552.7 392 71.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 6.6e-155 551.2 417 69.3
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 8.7e-155 550.8 378 74.6
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 2.6e-151 539.3 387 73.4
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 4.4e-151 538.5 381 73.5
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.3e-150 537.0 381 72.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.7e-150 536.6 385 72.7
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 2.9e-150 535.8 411 68.1
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 3.8e-150 535.4 370 73.5
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 1.1e-149 533.9 446 65.7
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.4e-149 533.5 374 72.2
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.9e-149 533.1 433 65.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 2.1e-148 529.6 379 71.2
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 2.1e-148 529.6 408 66.7
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 6.0e-148 528.1 413 69.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 6.0e-148 528.1 368 72.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 1.0e-147 527.3 401 69.3
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 1.7e-147 526.6 287 88.5
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 6.6e-147 524.6 362 71.8
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.7e-147 524.2 390 69.0
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 8.7e-147 524.2 401 69.1
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 8.7e-147 524.2 385 70.9
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.1e-146 523.9 408 68.1
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 4.3e-146 521.9 384 70.8
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 9.6e-146 520.8 402 69.7
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 2.8e-145 519.2 389 69.4
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 3.6e-145 518.8 385 69.4
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 4.8e-145 518.5 287 86.8
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 4.8e-145 518.5 370 71.1
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.1e-144 517.3 363 70.0
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.1e-144 517.3 389 68.9
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 1.4e-144 516.9 384 69.8
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 2.0e-143 513.1 375 69.6
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.6e-143 512.7 386 69.2
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 7.6e-143 511.1 385 68.1
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 9.9e-143 510.8 360 73.1
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.3e-142 510.4 360 70.8
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.9e-141 506.5 376 69.9
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 1.9e-141 506.5 376 69.9
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 4.2e-141 505.4 418 65.1
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 9.3e-141 504.2 387 68.2
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.2e-140 503.8 363 70.8
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 3.5e-140 502.3 388 66.5
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 4.6e-140 501.9 287 83.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.8e-139 500.0 366 68.9
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 5.1e-139 498.4 348 73.0
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 5.1e-139 498.4 398 66.1
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 8.7e-139 497.7 375 69.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 8.7e-139 497.7 389 66.3
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.3e-138 495.7 404 64.9
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 2.1e-137 493.0 382 67.8
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 8.1e-137 491.1 392 64.8
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 8.1e-137 491.1 420 63.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 8.1e-137 491.1 364 68.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 6.9e-136 488.0 368 69.0
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.2e-135 487.3 341 72.1
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.2e-135 487.3 385 64.2
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 2.6e-135 486.1 364 67.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.4e-135 485.7 408 63.2
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.2e-132 477.2 408 61.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.6e-132 476.9 386 64.0
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 1.3e-131 473.8 415 59.5
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 3.9e-131 472.2 393 64.1
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.7e-129 465.7 401 61.3
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.1e-128 464.2 412 59.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.4e-128 463.0 387 61.5
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.1e-128 462.6 405 60.2
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.3e-128 461.8 388 61.6
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.2e-127 460.7 388 63.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.4e-127 459.1 377 64.5
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.4e-127 459.1 287 78.7
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.6e-127 458.0 412 60.0
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 3.8e-126 455.7 347 69.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 4.9e-126 455.3 390 61.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 4.9e-126 455.3 389 60.7
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 1.1e-125 454.1 372 62.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.5e-125 453.0 408 59.6
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 3.2e-125 452.6 353 65.2
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 4.2e-125 452.2 405 59.0
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 7.1e-125 451.4 385 61.6
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-124 450.3 407 59.5
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.1e-124 449.9 385 61.3
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.1e-124 449.9 397 58.9
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.9e-124 448.0 393 61.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.9e-124 448.0 395 62.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.9e-123 445.7 385 61.0
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 8.2e-121 438.0 502 49.2
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.8e-120 436.8 391 61.6
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 9.0e-120 434.5 389 62.0
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.5e-119 433.7 389 61.7
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 2.6e-119 433.0 388 60.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 5.9e-119 431.8 389 61.4
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.7e-119 431.4 389 61.2
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.7e-119 431.4 389 61.2
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 1.7e-118 430.3 389 60.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-118 430.3 389 60.7
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.2e-118 429.9 389 60.4
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.2e-118 429.9 362 62.4
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 5.0e-118 428.7 373 62.5
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-117 427.2 389 60.7
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 3.2e-117 426.0 373 61.4
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 1.2e-116 424.1 290 65.5
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 3.6e-116 422.5 370 59.2
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 8.8e-115 417.9 398 53.0
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.0e-114 416.8 287 74.6
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.8e-113 412.9 373 57.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 3.8e-110 402.5 360 61.1
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.0e-106 390.2 327 64.5
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 5.9e-103 378.6 347 56.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.3e-97 360.9 251 71.3
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.1e-96 357.8 379 49.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 1.1e-85 321.2 166 91.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 5.6e-61 239.2 331 40.5
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 8.0e-60 235.3 171 68.4
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 2.6e-58 230.3 289 44.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 7.5e-58 228.8 160 70.0
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 6.2e-52 209.1 258 46.9
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 8.1e-44 182.2 248 47.6
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-34 151.8 189 46.0
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.2e-26 125.2 123 58.5
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 1.2e-26 125.2 72 81.9
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.6e-26 124.0 173 45.1
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 4.6e-23 113.2 120 55.8
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.1e-19 102.1 286 27.3
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 1.9e-16 91.3 56 75.0
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.0e-14 85.5 112 48.2


User provided reference genes

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