Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 3.6e-214 748.0 401 100.0
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 1.8e-120 436.8 403 66.3
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 4.0e-112 409.1 409 63.1
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 7.6e-111 404.8 407 60.7
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 3.8e-110 402.5 401 61.1
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 6.4e-110 401.7 410 62.4
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 4.1e-109 399.1 415 61.0
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 4.1e-109 399.1 401 61.6
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 2.7e-108 396.4 406 61.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.3e-107 394.0 398 60.1
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.7e-107 393.7 401 59.1
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 6.6e-107 391.7 412 58.0
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 6.2e-105 385.2 414 59.7
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 1.8e-104 383.6 396 60.1
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 2.4e-104 383.3 397 58.9
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 3.1e-104 382.9 413 57.1
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.2e-102 376.7 405 59.8
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 3.8e-102 375.9 402 57.7
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.1e-100 370.2 397 58.7
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.1e-100 370.2 403 57.6
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 3.5e-100 369.4 395 59.5
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 4.3e-98 362.5 398 56.8
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 9.6e-98 361.3 344 64.0
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 8.1e-97 358.2 424 55.2
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-96 357.5 407 56.3
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 3.1e-96 356.3 395 56.5
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.3e-96 355.5 409 55.7
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 6.9e-96 355.1 422 57.1
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.5e-95 352.4 412 55.3
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 4.5e-95 352.4 396 56.3
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 1.1e-93 347.8 393 57.3
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 3.2e-93 346.3 425 53.4
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.1e-93 345.1 411 54.7
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.2e-92 344.4 418 53.6
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 1.3e-91 340.9 396 57.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 1.8e-91 340.5 415 52.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 3.9e-91 339.3 347 58.2
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 8.7e-91 338.2 415 53.5
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.2e-89 332.0 403 55.6
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 2.4e-88 330.1 403 54.3
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 3.1e-88 329.7 393 54.2
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 3.1e-88 329.7 354 58.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 5.3e-88 328.9 415 53.3
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 2.0e-87 327.0 408 52.5
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.6e-87 326.6 410 53.9
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 2.6e-87 326.6 413 53.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.5e-87 325.9 372 56.7
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.9e-86 323.2 413 53.5
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 3.8e-86 322.8 372 56.2
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 4.9e-86 322.4 354 55.4
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.4e-86 322.0 372 56.5
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 6.4e-86 322.0 354 55.9
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.9e-85 320.5 354 55.9
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 3.2e-85 319.7 424 50.7
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 1.6e-84 317.4 413 52.8
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 2.1e-84 317.0 407 52.3
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.3e-83 314.3 408 52.0
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 2.3e-83 313.5 406 51.0
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.0e-83 313.2 352 55.7
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 5.1e-83 312.4 406 51.0
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 8.7e-83 311.6 409 52.3
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 1.1e-82 311.2 400 52.8
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 6.9e-80 302.0 404 52.7
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 3.4e-79 299.7 398 50.8
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 3.8e-78 296.2 442 48.2
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 6.5e-78 295.4 406 49.8
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 8.4e-78 295.0 442 48.2
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 4.2e-77 292.7 401 51.6
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 1.6e-76 290.8 403 50.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 2.1e-76 290.4 407 49.4
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 2.7e-76 290.0 402 52.5
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.0e-75 288.1 404 51.0
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-75 287.3 357 53.8
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 5.7e-74 282.3 422 49.3
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 7.4e-74 282.0 394 50.0
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.4e-72 277.7 404 48.3
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 3.8e-70 269.6 433 46.7
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 1.1e-69 268.1 372 52.2
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.9e-69 267.3 409 47.2
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 5.5e-69 265.8 395 49.4
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 1.6e-68 264.2 413 48.4
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 2.1e-68 263.8 400 49.2
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 2.7e-68 263.5 425 48.9
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 4.6e-68 262.7 379 47.2
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 7.9e-68 261.9 261 65.1
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.3e-67 261.2 409 46.5
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 6.7e-67 258.8 401 49.9
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 8.7e-67 258.5 404 49.5
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 1.6e-65 254.2 399 45.4
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 4.8e-65 252.7 393 49.1
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 6.9e-64 248.8 411 44.3
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 9.1e-64 248.4 399 43.6
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.5e-63 246.1 334 49.1
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 5.9e-63 245.7 306 56.2
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 3.8e-62 243.0 401 43.9
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 2.5e-61 240.4 414 45.4
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 5.5e-61 239.2 411 43.6
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 2.1e-60 237.3 396 48.7
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 2.7e-60 236.9 396 48.5
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 2.7e-60 236.9 394 47.7
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.6e-60 236.5 396 48.0
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 3.6e-60 236.5 406 45.8
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 1.0e-59 235.0 395 48.1
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 1.0e-59 235.0 395 48.1
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.0e-59 235.0 395 48.1
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 1.8e-59 234.2 396 48.0
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 1.8e-59 234.2 393 47.3
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 2.3e-59 233.8 395 47.6
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 6.7e-59 232.3 362 46.1
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 8.8e-59 231.9 363 48.8
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.8e-57 226.1 279 54.5
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.8e-57 226.1 279 54.5
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 8.2e-57 225.3 329 48.9
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.9e-54 216.9 409 41.3
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.4e-53 214.5 405 43.7
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 4.2e-53 213.0 410 41.0
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.5e-50 204.5 300 49.3
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 5.7e-50 202.6 432 39.1
Sopen11g007340 Solanum pennellii HOM05D004683 ORTHO05D005388 3.2e-45 186.8 191 57.1
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.2e-44 184.9 391 41.4
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-43 181.4 283 46.3
unitig_37.g12183 Utricularia gibba HOM05D004683 ORTHO05D005388 1.4e-43 181.4 221 51.1
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 1.1e-40 171.8 338 41.1
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 2.9e-38 163.7 236 50.4
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 8.5e-38 162.2 394 37.8
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 1.9e-37 161.0 316 39.9
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.0e-35 155.2 373 38.3
MSTRG.16041 Avicennia marina HOM05D004683 ORTHO05D005388 1.4e-32 144.8 195 50.3
PSO339G0967 Papaver somniferum HOM05D004683 ORTHO05D005388 3.2e-29 133.7 106 67.9
MSTRG.14824 Avicennia marina HOM05D004683 ORTHO05D005388 1.8e-27 127.9 118 65.3
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.8e-27 125.6 208 47.6
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.8e-27 125.6 208 47.6
CSS0011389 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-26 124.8 127 55.9
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.8e-25 120.6 385 35.1
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-23 114.4 219 44.3
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.8e-22 110.2 261 39.8
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 4.0e-19 100.1 259 37.5
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 4.4e-18 96.7 198 43.4
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 4.9e-17 93.2 202 41.6
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.3e-17 92.4 211 40.8
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.4e-16 90.9 211 40.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.2e-16 90.5 211 40.3
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 9.2e-16 89.0 211 39.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-15 88.6 211 40.3
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 4.7e-12 76.6 109 50.5
Sabra19G0093600 Salix brachista HOM05D000057 ORTHO05D005388 5.2e-11 73.2 86 58.1
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.2e-10 72.0 211 36.0
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.5e-10 71.6 78 56.4
Os05g0547100 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 3.4e-10 70.5 149 40.9
SMO351G0434 Selaginella moellendorffii HOM05D025386 ORTHO05D005388 3.4e-10 70.5 168 31.5
Zm00001eb365900 Zea mays HOM05D004683 ORTHO05D005388 2.7e-07 60.8 143 35.7
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 6.6e-06 56.2 151 40.4


User provided reference genes

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