Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.5e-308 1060.4 541 100.0
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 2.1e-204 716.1 543 67.4
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 2.8e-201 705.7 542 64.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 5.8e-199 698.0 544 64.9
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.4e-194 681.0 542 62.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.7e-193 678.7 542 63.1
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 4.0e-192 675.2 544 64.9
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.3e-192 674.9 543 64.6
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.4e-191 672.2 545 64.2
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 3.4e-191 672.2 545 64.2
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 1.2e-188 663.7 543 64.3
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.0e-187 660.6 544 62.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.3e-187 660.2 544 62.1
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.0e-187 659.1 542 63.7
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 6.7e-187 657.9 548 62.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 1.5e-186 656.8 546 61.4
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.5e-186 656.0 540 63.5
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 2.5e-186 656.0 541 62.7
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 3.3e-186 655.6 541 62.3
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 3.3e-186 655.6 543 62.6
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 2.8e-185 652.5 543 63.2
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 1.4e-184 650.2 551 61.9
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 2.4e-184 649.4 551 62.1
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 6.9e-184 647.9 543 61.0
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 9.0e-184 647.5 544 61.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.2e-183 647.1 542 61.3
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 1.2e-183 647.1 544 62.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.0e-183 646.4 545 62.0
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 2.6e-183 646.0 546 61.4
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.6e-183 646.0 542 62.9
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 4.5e-183 645.2 544 61.9
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 5.0e-182 641.7 548 61.5
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 8.5e-182 641.0 547 62.9
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 1.1e-181 640.6 543 62.1
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 1.4e-181 640.2 542 61.3
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 1.4e-181 640.2 546 60.4
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.5e-181 639.4 542 60.9
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 4.2e-181 638.6 542 61.6
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.2e-180 637.1 533 60.6
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.7e-180 636.0 542 60.9
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 4.3e-178 628.6 503 64.6
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 7.4e-178 627.9 543 59.5
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.3e-177 627.1 548 61.1
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.7e-177 625.5 548 60.4
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 4.8e-177 625.2 542 60.1
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 6.3e-177 624.8 545 58.2
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.1e-176 624.0 543 60.2
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 3.1e-176 622.5 537 60.3
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 6.9e-176 621.3 541 58.4
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.9e-176 621.3 542 60.0
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.9e-174 615.9 542 60.0
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.5e-173 612.8 545 59.6
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.2e-173 612.1 547 57.6
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 4.2e-173 612.1 545 58.9
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 5.5e-173 611.7 585 56.4
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 7.2e-173 611.3 545 57.8
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.6e-172 609.0 543 59.1
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 6.1e-172 608.2 542 59.6
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-171 606.7 545 56.7
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 1.8e-171 606.7 544 59.9
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 3.0e-171 605.9 544 56.8
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 3.0e-171 605.9 542 59.0
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 3.9e-171 605.5 544 56.6
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 6.7e-171 604.7 583 55.6
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.5e-170 603.6 536 59.7
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 1.5e-170 603.6 542 59.0
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-170 603.2 545 56.5
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 2.0e-170 603.2 550 58.2
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.6e-170 602.8 546 58.4
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.3e-170 602.4 543 60.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 4.4e-170 602.1 528 59.5
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 5.7e-170 601.7 545 56.3
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 5.7e-170 601.7 542 57.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 9.7e-170 600.9 544 57.9
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 2.2e-169 599.7 585 56.1
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 4.5e-167 592.0 543 56.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 8.5e-166 587.8 546 56.4
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-165 586.6 545 56.5
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 2.5e-165 586.3 529 59.7
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.6e-164 582.4 544 57.7
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 3.0e-163 579.3 543 57.3
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.8e-161 572.8 547 54.3
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 4.8e-161 572.0 516 58.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 8.2e-161 571.2 537 56.8
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-160 570.9 585 54.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.0e-160 568.2 585 53.7
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-159 567.0 585 53.8
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 3.5e-159 565.8 548 55.3
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-159 565.5 585 53.3
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-158 563.9 572 54.5
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.9e-158 562.8 585 53.5
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 4.2e-157 558.9 534 53.9
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 4.0e-155 552.4 543 54.7
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-154 550.4 586 52.7
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.6e-154 549.7 558 54.3
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.8e-152 543.5 541 55.1
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.5e-146 523.9 505 53.1
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.0e-142 511.1 416 63.5
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.4e-136 490.7 557 50.1
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 1.8e-136 490.3 406 60.8
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.2e-135 487.6 557 49.2
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.3e-129 467.6 428 58.2
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.9e-129 465.7 421 58.2
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 7.5e-122 441.8 500 48.6
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.0e-118 429.9 545 45.7
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 6.6e-118 428.7 357 60.5
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 3.5e-111 406.4 492 47.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-110 404.8 319 64.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.5e-109 401.0 577 39.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 4.0e-107 392.9 467 48.4
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 2.7e-103 380.2 425 52.0
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 8.1e-100 368.6 518 40.0
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.4e-99 367.9 547 43.1
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 3.8e-97 359.8 354 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.3e-89 334.7 489 39.5
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 2.4e-88 330.5 571 36.8
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-85 320.9 426 46.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 3.3e-85 320.1 503 41.6
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.6e-84 317.8 503 41.2
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 1.1e-83 315.1 267 61.0
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.3e-81 308.1 316 53.8
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 3.9e-78 296.6 488 36.1
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.1e-76 290.8 346 47.4
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.4e-62 245.0 261 52.1
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-58 231.9 227 56.8
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.0e-57 228.8 229 56.8
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.4e-56 224.9 220 53.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.7e-36 157.1 588 26.5
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 1.2e-34 152.1 170 52.4
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 3.5e-34 150.6 111 68.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.5e-32 143.3 508 27.6
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.6e-31 141.7 123 56.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 2.1e-31 141.4 188 48.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 8.0e-31 139.4 113 58.4
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 2.2e-28 131.3 451 27.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.8e-28 130.2 104 61.5
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.8e-27 128.3 103 61.2
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.8e-27 128.3 502 26.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.7e-25 121.7 115 52.2
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.8e-25 120.6 104 57.7
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 9.5e-24 115.9 97 59.8
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 4.7e-23 113.6 88 64.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 3.7e-20 104.0 87 62.1
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.3e-17 95.5 161 41.0
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.4e-14 85.5 96 41.7
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 2.3e-14 84.7 568 22.5
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 1.9e-11 75.1 123 39.8
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.6e-10 70.5 80 50.0
Cfa026360 Carpinus fangiana HOM05D001925 ORTHO05D005701 3.0e-09 67.8 520 22.9


User provided reference genes

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