Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0793 Punica granatum HOM05D006449 ORTHO05D007995 1.4e-65 252.7 120 100.0
Hma1.2p1_0205F.1_g086990 Hydrangea macrophylla HOM05D006449 ORTHO05D007995 4.9e-58 227.6 120 87.5
CSS0028691 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.9e-57 225.7 120 87.5
Nn6g35286 Nelumbo nucifera HOM05D006449 ORTHO05D007995 1.9e-57 225.7 120 86.7
Actinidia08770 Actinidia chinensis HOM05D006449 ORTHO05D007995 5.5e-57 224.2 120 86.7
Nn2g13802 Nelumbo nucifera HOM05D006449 ORTHO05D007995 7.1e-57 223.8 120 85.8
Glyma.10G055200 Glycine max HOM05D006449 ORTHO05D007995 3.5e-56 221.5 120 85.8
Lj5g0001377 Lotus japonicus HOM05D006449 ORTHO05D007995 4.6e-56 221.1 120 85.8
Sed0015731 Sechium edule HOM05D006449 ORTHO05D007995 4.6e-56 221.1 120 85.8
Manes.09G065800 Manihot esculenta HOM05D006449 ORTHO05D007995 2.3e-55 218.8 120 85.0
Nitab4.5_0000814g0040 Nicotiana tabacum HOM05D006449 ORTHO05D007995 2.3e-55 218.8 119 85.7
CAN.G900.29 Capsicum annuum HOM05D006449 ORTHO05D007995 3.0e-55 218.4 119 84.9
Glyma.13G142300 Glycine max HOM05D006449 ORTHO05D007995 3.0e-55 218.4 120 84.2
Phvul.007G219000 Phaseolus vulgaris HOM05D006449 ORTHO05D007995 3.0e-55 218.4 120 85.0
CiPaw.10G129500 Carya illinoinensis HOM05D006449 ORTHO05D007995 5.1e-55 217.6 118 84.7
Medtr1g063190 Medicago truncatula HOM05D006449 ORTHO05D007995 5.1e-55 217.6 120 84.2
CsaV3_6G039970 Cucumis sativus L. HOM05D006449 ORTHO05D007995 6.7e-55 217.2 120 85.8
Nitab4.5_0003861g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 1.5e-54 216.1 119 84.9
Solyc09g008230.3 Solanum lycopersicum HOM05D006449 ORTHO05D007995 1.5e-54 216.1 119 84.9
Sopen09g003050 Solanum pennellii HOM05D006449 ORTHO05D007995 1.5e-54 216.1 119 84.9
HanXRQChr15g0491571 Helianthus annuus HOM05D006449 ORTHO05D007995 1.9e-54 215.7 120 84.2
Psat6g074040 Pisum sativum HOM05D006449 ORTHO05D007995 2.5e-54 215.3 120 83.3
Ca_11505_v3 Cicer arietinum L. HOM05D006449 ORTHO05D007995 3.3e-54 214.9 120 83.3
PGSC0003DMG400003863 Solanum tuberosum HOM05D006449 ORTHO05D007995 3.3e-54 214.9 119 84.0
Peaxi162Scf00311g00119 Petunia axillaris HOM05D006449 ORTHO05D007995 4.3e-54 214.5 119 84.0
Thecc.05G067500 Theobroma cacao HOM05D006449 ORTHO05D007995 7.4e-54 213.8 120 84.2
Atru.chr8.1798 Acer truncatum HOM05D006449 ORTHO05D007995 9.7e-54 213.4 118 83.1
VMungo0720G3134 Vigna mungo HOM05D006449 ORTHO05D007995 1.3e-53 213.0 120 82.5
Duzib093G0849 Durio zibethinus HOM05D006449 ORTHO05D007995 1.6e-53 212.6 120 83.3
TWI77G0881 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 6.3e-53 210.7 118 83.1
Gorai.002G246900 Gossypium raimondii HOM05D006449 ORTHO05D007995 1.1e-52 209.9 120 82.5
EL10Ac7g16636 Beta vulgaris HOM05D006449 ORTHO05D007995 1.4e-52 209.5 120 81.7
ClCG04G009390 Citrullus lanatus HOM05D006449 ORTHO05D007995 1.4e-52 209.5 120 83.3
ECA248G0052 Erigeron canadensis HOM05D006449 ORTHO05D007995 1.4e-52 209.5 120 84.2
TWI74G0214 Tripterygium wilfordii HOM05D006449 ORTHO05D007995 1.4e-52 209.5 118 82.2
DCAR_015000 Daucus carota HOM05D006449 ORTHO05D007995 1.8e-52 209.1 121 83.5
TPR.G11267 Trifolium pratense HOM05D006449 ORTHO05D007995 1.8e-52 209.1 120 80.8
MSTRG.5764 Avicennia marina HOM05D006449 ORTHO05D007995 3.1e-52 208.4 120 82.5
AUR62042508 Chenopodium quinoa HOM05D006449 ORTHO05D007995 5.3e-52 207.6 120 80.0
Oeu041490.2 Olea europaea HOM05D006449 ORTHO05D007995 5.3e-52 207.6 127 79.5
Aqoxy1G01150 Aquilegia oxysepala HOM05D006449 ORTHO05D007995 9.0e-52 206.8 120 80.0
Potri.016G093500 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.2e-51 206.5 123 82.9
AUR62040339 Chenopodium quinoa HOM05D006449 ORTHO05D007995 1.5e-51 206.1 120 80.0
Gohir.A01G213500 Gossypium hirsutum HOM05D006449 ORTHO05D007995 1.5e-51 206.1 120 80.8
Gohir.D01G202200 Gossypium hirsutum HOM05D006449 ORTHO05D007995 2.6e-51 205.3 120 81.7
Sabra16G0098600 Salix brachista HOM05D006449 ORTHO05D007995 3.4e-51 204.9 123 82.9
FAN05G0981 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 122 83.6
FAN14G2797 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 122 83.6
FAN14G3008 Fragaria x ananassa HOM05D006449 ORTHO05D007995 4.5e-51 204.5 122 83.6
SEGI_04945 Sequoiadendron giganteum HOM05D006449 ORTHO05D007995 1.0e-50 203.4 116 80.2
CDE09G0874 Ceratophyllum demersum HOM05D006449 ORTHO05D007995 1.7e-50 202.6 120 78.3
FvH4_6g16440 Fragaria vesca HOM05D006449 ORTHO05D007995 1.7e-50 202.6 121 82.6
FAN02G2429 Fragaria x ananassa HOM05D006449 ORTHO05D007995 2.2e-50 202.2 122 82.8
Peaxi162Scf00638g00414 Petunia axillaris HOM05D006449 ORTHO05D007995 2.2e-50 202.2 119 81.5
RcHm_v2.0_Chr3g0470301 Rosa chinensis HOM05D006449 ORTHO05D007995 5.0e-50 201.1 122 83.6
Hund26578 Selenicereus undatus HOM05D006449 ORTHO05D007995 5.0e-50 201.1 120 77.5
GSVIVG01033644001 Vitis vinifera HOM05D006449 ORTHO05D007995 5.0e-50 201.1 121 81.0
Hund20380 Selenicereus undatus HOM05D006449 ORTHO05D007995 3.2e-49 198.4 120 76.7
THA.LOC104823475 Tarenaya hassleriana HOM05D006449 ORTHO05D007995 3.6e-48 194.9 118 78.0
CSS0018897 Camellia sinensis var. sinensis HOM05D006449 ORTHO05D007995 1.0e-47 193.4 134 72.4
Os08g0564500 Oryza sativa ssp. japonica HOM05D006449 ORTHO05D007995 1.4e-47 193.0 125 75.2
Thhalv10017435m.g Eutrema salsugineum HOM05D006449 ORTHO05D007995 2.3e-47 192.2 115 77.4
AT2G36930 Arabidopsis thaliana HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
BcaB01g03807 Brassica carinata HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
A05p08950 Brassica napus HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
C04p11060 Brassica napus HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
BolC4t22754H Brassica oleracea HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
BraA05t19857Z Brassica rapa HOM05D006449 ORTHO05D007995 3.9e-47 191.4 116 76.7
CARHR131400 Cardamine hirsuta HOM05D006449 ORTHO05D007995 5.1e-47 191.0 118 74.6
BcaB02g09320 Brassica carinata HOM05D006449 ORTHO05D007995 8.8e-47 190.3 116 75.9
BcaC02g11815 Brassica carinata HOM05D006449 ORTHO05D007995 8.8e-47 190.3 116 75.9
AL4G33170 Arabidopsis lyrata HOM05D006449 ORTHO05D007995 2.0e-46 189.1 116 75.0
Lsat_1_v5_gn_1_52340 Lactuca sativa HOM05D006449 ORTHO05D007995 3.3e-46 188.3 120 75.8
A03p20330 Brassica napus HOM05D006449 ORTHO05D007995 4.3e-46 188.0 116 75.0
BraA03t11279Z Brassica rapa HOM05D006449 ORTHO05D007995 4.3e-46 188.0 116 75.0
BcaC01g05620 Brassica carinata HOM05D006449 ORTHO05D007995 5.7e-46 187.6 116 75.0
C03p23890 Brassica napus HOM05D006449 ORTHO05D007995 5.7e-46 187.6 116 75.0
BolC3t14781H Brassica oleracea HOM05D006449 ORTHO05D007995 5.7e-46 187.6 116 75.0
Sp4g19220 Schrenkiella parvula HOM05D006449 ORTHO05D007995 5.7e-46 187.6 116 75.0
Zm00001eb038700 Zea mays HOM05D006449 ORTHO05D007995 5.7e-46 187.6 125 72.8
unitig_749.g14285 Utricularia gibba HOM05D006449 ORTHO05D007995 1.7e-45 186.0 119 74.8
Carub.0004s1878 Capsella rubella HOM05D006449 ORTHO05D007995 2.8e-45 185.3 116 75.0
Sabra06G0098200 Salix brachista HOM05D006449 ORTHO05D007995 8.5e-42 173.7 101 83.2
Rhsim03G0091200 Rhododendron simsii HOM05D006449 ORTHO05D007995 1.4e-41 172.9 91 86.8
HanXRQChr01g0027751 Helianthus annuus HOM05D006449 ORTHO05D007995 1.9e-41 172.6 91 85.7
SGA_v2.0_scaffold75G24848 Striga asiatica HOM05D006449 ORTHO05D007995 2.5e-41 172.2 91 87.9
Lalb_Chr02g0155801 Lupinus albus HOM05D006449 ORTHO05D007995 9.4e-41 170.2 88 87.5
Cfa017617 Carpinus fangiana HOM05D006449 ORTHO05D007995 2.7e-40 168.7 130 66.2
Aa31LG5G22150 Aethionema arabicum HOM05D006449 ORTHO05D007995 3.6e-40 168.3 118 69.5
SGA_v2.0_scaffold40G15520 Striga asiatica HOM05D006449 ORTHO05D007995 3.6e-40 168.3 91 85.7
QL07p043219 Quercus lobata HOM05D006449 ORTHO05D007995 4.7e-40 167.9 87 83.9
Mapoly0185s0018 Marchantia polymorpha HOM05D006449 ORTHO05D007995 7.9e-40 167.2 115 67.8
COL.COLO4_26955 Corchorus olitorius HOM05D006449 ORTHO05D007995 8.8e-39 163.7 101 76.2
CANSAT80G0535 Cannabis sativa HOM05D006449 ORTHO05D007995 2.0e-38 162.5 88 85.2
MELO3C024474.2 Cucumis melo HOM05D006449 ORTHO05D007995 2.6e-38 162.2 88 86.4
ATR0219G007 Amborella trichopoda HOM05D006449 ORTHO05D007995 2.4e-36 155.6 88 76.1
Nitab4.5_0029554g0010 Nicotiana tabacum HOM05D006449 ORTHO05D007995 3.1e-36 155.2 91 78.0
Ciclev10013228m.g Citrus clementina HOM05D006449 ORTHO05D007995 2.0e-35 152.5 84 81.0
MD12G1112600 Malus domestica HOM05D006449 ORTHO05D007995 2.0e-35 152.5 88 79.5
Pp3c13_22060 Physcomitrium patens HOM05D006449 ORTHO05D007995 2.0e-35 152.5 115 61.7
Cc06_g04250 Coffea canephora HOM05D006449 ORTHO05D007995 7.7e-35 150.6 72 94.4
PSO063G3287 Papaver somniferum HOM05D006449 ORTHO05D007995 1.0e-34 150.2 115 65.2
PSO339G4301 Papaver somniferum HOM05D006449 ORTHO05D007995 1.0e-34 150.2 115 65.2
arahy.Tifrunner.gnm1.ann1.9GBJ25 Arachis hypogaea HOM05D006449 ORTHO05D007995 1.3e-34 149.8 86 80.2
arahy.Tifrunner.gnm1.ann1.D9FX9P Arachis hypogaea HOM05D006449 ORTHO05D007995 1.3e-34 149.8 86 80.2
Potri.006G124100 Populus trichocarpa HOM05D006449 ORTHO05D007995 1.7e-34 149.4 78 87.2
MD00G1155400 Malus domestica HOM05D006449 ORTHO05D007995 6.5e-34 147.5 88 77.3
Sc20g0005520 Simmondsia chinensis HOM05D006449 ORTHO05D007995 6.5e-34 147.5 86 77.9
Migut.J00654 Erythranthe guttata HOM05D006449 ORTHO05D007995 1.2e-32 143.3 86 76.7
HPP92_025806 Vanilla planifolia HOM05D006449 ORTHO05D007995 2.1e-32 142.5 90 73.3
Oeu005023.1 Olea europaea HOM05D006449 ORTHO05D007995 1.4e-31 139.8 101 68.3
vmacro07293 Vaccinium macrocarpon HOM05D006449 ORTHO05D007995 1.4e-31 139.8 98 69.4
Haze_20546 Corylus avellana HOM05D006449 ORTHO05D007995 2.3e-31 139.0 100 67.0
Manes.08G011000 Manihot esculenta HOM05D006449 ORTHO05D007995 1.5e-30 136.3 97 71.1
SMO144G0185 Selaginella moellendorffii HOM05D006449 ORTHO05D007995 6.5e-26 120.9 67 76.1
Prupe.7G129700 Prunus persica HOM05D006449 ORTHO05D007995 2.8e-21 105.5 65 70.8
TAR633G1413 Trochodendron aralioides HOM05D002509 ORTHO05D002758 5.3e-20 101.3 54 83.3
PRCOL_00003735 Prasinoderma coloniale HOM05D006449 ORTHO05D007995 9.4e-17 90.5 110 41.8
CBR_g8310 Chara braunii HOM05D006449 ORTHO05D007995 4.0e-15 85.1 115 41.7
Lj3A986G82 Lonicera japonica HOM05D006449 ORTHO05D007995 2.0e-14 82.8 120 44.2
Cre17.g734628 Chlamydomonas reinhardtii HOM05D006449 ORTHO05D007995 4.8e-13 78.2 128 35.2
MCO09G543 Micromonas commoda HOM05D006449 ORTHO05D007995 2.7e-11 72.4 70 48.6
MSTRG.19181 Avicennia marina HOM05D006449 ORTHO05D007995 2.9e-10 68.9 32 96.9
HanXRQChr16g0526221 Helianthus annuus HOM05D006449 ORTHO05D007995 2.5e-09 65.9 30 90.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.0e-07 60.5 30 90.0
unitig_75.g29315 Utricularia gibba HOM05D006449 ORTHO05D007995 3.4e-06 55.5 25 96.0


User provided reference genes

Program Settings