Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 3.6e-79 298.1 146 100.0
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 6.0e-66 254.2 131 96.9
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 3.8e-44 181.8 134 68.7
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 6.3e-39 164.5 133 64.7
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 6.3e-39 164.5 133 64.7
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 3.1e-38 162.2 131 61.8
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 4.1e-38 161.8 134 62.7
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 5.3e-38 161.4 131 64.1
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 9.0e-38 160.6 133 63.2
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 1.5e-37 159.8 123 65.9
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.5e-37 158.3 131 61.1
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 5.9e-37 157.9 125 65.6
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 7.7e-37 157.5 134 63.4
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 7.7e-37 157.5 127 65.4
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.3e-36 156.8 133 63.9
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 3.8e-36 155.2 136 63.2
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 5.0e-36 154.8 129 64.3
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 5.0e-36 154.8 132 62.1
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 5.0e-36 154.8 128 64.8
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 6.5e-36 154.5 131 58.8
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 1.1e-35 153.7 121 62.0
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 1.4e-35 153.3 124 64.5
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 1.4e-35 153.3 132 62.9
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 1.9e-35 152.9 137 62.0
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.9e-35 152.9 136 62.5
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 5.5e-35 151.4 131 61.8
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 5.5e-35 151.4 137 61.3
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 5.5e-35 151.4 131 56.5
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 2.1e-34 149.4 131 61.1
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 2.7e-34 149.1 135 61.5
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 2.7e-34 149.1 119 64.7
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 3.6e-34 148.7 119 64.7
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 4.6e-34 148.3 131 61.8
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 4.6e-34 148.3 130 61.5
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 4.6e-34 148.3 119 65.5
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 4.6e-34 148.3 118 64.4
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 6.1e-34 147.9 135 60.7
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 1.4e-33 146.7 135 60.7
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 1.8e-33 146.4 127 59.8
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 3.0e-33 145.6 132 55.3
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.0e-33 145.6 135 60.7
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 3.9e-33 145.2 126 62.7
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 3.9e-33 145.2 131 60.3
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.1e-32 143.7 130 60.8
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 1.5e-32 143.3 137 59.9
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 1.5e-32 143.3 137 59.1
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.9e-32 142.9 127 59.8
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.9e-32 142.9 125 61.6
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 1.9e-32 142.9 132 58.3
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.9e-32 142.9 131 57.3
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.7e-32 141.4 121 62.8
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 7.4e-32 141.0 118 61.9
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 7.4e-32 141.0 120 60.8
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 9.7e-32 140.6 129 62.8
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 1.3e-31 140.2 129 60.5
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 1.3e-31 140.2 121 61.2
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 1.3e-31 140.2 120 60.0
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 2.2e-31 139.4 117 63.2
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 2.2e-31 139.4 172 48.8
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 2.8e-31 139.0 120 60.0
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 3.7e-31 138.7 119 60.5
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 3.7e-31 138.7 137 57.7
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 3.7e-31 138.7 128 59.4
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 6.3e-31 137.9 123 55.3
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 6.3e-31 137.9 126 59.5
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 6.3e-31 137.9 120 59.2
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 8.2e-31 137.5 131 57.3
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.8e-30 136.3 131 54.2
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 3.1e-30 135.6 116 56.9
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 3.1e-30 135.6 131 53.4
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 4.1e-30 135.2 128 59.4
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 9.1e-30 134.0 176 49.4
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.5e-29 133.3 134 53.7
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 2.0e-29 132.9 171 49.7
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 2.0e-29 132.9 123 58.5
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 3.4e-29 132.1 117 57.3
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 3.4e-29 132.1 131 52.7
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 5.9e-29 131.3 131 52.7
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.9e-29 131.3 122 58.2
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 5.9e-29 131.3 131 56.5
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 7.7e-29 131.0 128 60.2
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 7.7e-29 131.0 131 51.9
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 2.2e-28 129.4 128 54.7
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.2e-28 129.4 133 55.6
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 3.8e-28 128.6 131 52.7
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 5.0e-28 128.3 117 55.6
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 5.0e-28 128.3 108 66.7
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 6.5e-28 127.9 132 53.0
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 6.5e-28 127.9 125 51.2
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 6.5e-28 127.9 129 56.6
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.9e-27 126.3 132 51.5
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 1.9e-27 126.3 128 53.9
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 2.5e-27 125.9 132 52.3
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 2.5e-27 125.9 118 55.1
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 4.2e-27 125.2 132 52.3
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 4.2e-27 125.2 132 52.3
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 5.5e-27 124.8 131 51.1
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 5.5e-27 124.8 123 52.0
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 5.5e-27 124.8 122 55.7
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 2.7e-26 122.5 117 54.7
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 3.6e-26 122.1 117 54.7
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.7e-26 121.7 126 55.6
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 6.1e-26 121.3 117 54.7
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 6.1e-26 121.3 117 54.7
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 7.9e-26 120.9 177 44.6
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 1.4e-25 120.2 117 54.7
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 2.3e-25 119.4 159 44.0
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 5.1e-25 118.2 123 51.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.5e-24 116.7 128 55.5
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 2.0e-24 116.3 97 67.0
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 3.3e-24 115.5 176 43.2
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 7.4e-24 114.4 87 67.8
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 7.4e-24 114.4 118 50.8
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 2.8e-23 112.5 87 71.3
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 4.8e-23 111.7 136 50.0
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 2.4e-22 109.4 121 52.9
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 9.1e-22 107.5 142 43.0
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 1.0e-20 104.0 130 49.2
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 2.5e-19 99.4 121 45.5
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 3.2e-19 99.0 95 62.1
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 1.0e-17 94.0 137 39.4
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 2.2e-15 86.3 114 44.7
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 8.2e-15 84.3 110 44.5
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 1.2e-13 80.5 112 41.1
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 4.5e-13 78.6 117 41.9
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 2.5e-11 72.8 122 37.7
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 1.6e-10 70.1 89 41.6
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 1.4e-09 67.0 107 41.1
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.7e-08 61.6 67 58.2


User provided reference genes

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