Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 8.5e-93 344.0 215 100.0
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 5.9e-70 268.1 223 61.4
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 8.5e-69 264.2 223 61.0
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 1.9e-68 263.1 218 73.4
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 7.2e-68 261.2 218 74.8
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 1.6e-67 260.0 223 61.4
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.1e-67 259.6 219 72.6
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 3.6e-67 258.8 218 74.3
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 4.7e-67 258.5 225 71.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 2.3e-66 256.1 222 70.7
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 3.0e-66 255.8 220 71.8
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 4.0e-66 255.4 220 72.7
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 4.0e-66 255.4 220 71.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.0e-65 253.1 220 70.5
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 2.0e-65 253.1 219 60.7
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 2.6e-65 252.7 219 59.8
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.6e-65 252.7 219 58.9
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 3.4e-65 252.3 220 70.5
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 5.7e-65 251.5 220 59.1
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 7.5e-65 251.1 212 59.0
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 2.2e-64 249.6 223 58.7
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 2.2e-64 249.6 220 57.3
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 2.2e-64 249.6 222 58.1
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 2.8e-64 249.2 220 59.1
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 2.8e-64 249.2 215 72.6
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 3.7e-64 248.8 218 58.3
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 4.9e-64 248.4 216 72.7
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 6.3e-64 248.1 223 58.3
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 1.4e-63 246.9 216 59.7
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 1.8e-63 246.5 218 61.9
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.4e-63 246.1 216 69.9
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.1e-63 245.7 216 59.7
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 4.1e-63 245.4 224 64.7
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 4.1e-63 245.4 216 71.8
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 4.1e-63 245.4 216 70.4
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 7.0e-63 244.6 220 57.3
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 9.2e-63 244.2 218 56.9
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 9.2e-63 244.2 221 71.5
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 9.2e-63 244.2 218 71.1
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 1.6e-62 243.4 223 57.0
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.6e-62 243.4 211 59.7
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 2.0e-62 243.0 220 58.2
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 2.0e-62 243.0 219 58.9
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 2.0e-62 243.0 217 56.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 2.7e-62 242.7 219 57.1
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 3.5e-62 242.3 216 57.4
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 3.5e-62 242.3 215 59.1
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 1.0e-61 240.7 218 57.8
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.3e-61 240.4 215 58.1
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 1.3e-61 240.4 215 70.7
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 1.3e-61 240.4 215 70.7
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 1.3e-61 240.4 219 68.0
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 2.3e-61 239.6 215 60.0
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 2.3e-61 239.6 219 60.7
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 2.9e-61 239.2 223 57.8
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.9e-61 239.2 215 59.5
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.9e-61 239.2 224 54.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 2.9e-61 239.2 219 56.6
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 2.9e-61 239.2 219 57.5
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 3.8e-61 238.8 215 58.1
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 3.8e-61 238.8 218 56.9
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 6.6e-61 238.0 216 56.5
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 6.6e-61 238.0 213 70.9
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 8.6e-61 237.7 217 58.1
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 8.6e-61 237.7 215 68.4
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 8.6e-61 237.7 216 56.9
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 1.1e-60 237.3 215 60.5
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 1.1e-60 237.3 224 54.0
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 1.5e-60 236.9 213 58.2
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 1.5e-60 236.9 213 58.2
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 1.9e-60 236.5 215 67.0
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 2.5e-60 236.1 215 70.2
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.5e-60 236.1 215 58.6
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.5e-60 236.1 212 67.5
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 4.3e-60 235.3 207 55.6
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 4.3e-60 235.3 213 58.2
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 5.6e-60 235.0 221 54.8
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 7.3e-60 234.6 216 66.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 7.3e-60 234.6 216 66.7
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 9.5e-60 234.2 220 56.4
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 1.2e-59 233.8 215 65.6
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 1.2e-59 233.8 215 58.1
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-59 233.4 211 59.7
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-59 233.4 211 59.7
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-59 233.4 211 59.7
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-59 233.4 211 59.7
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.6e-59 233.4 211 59.7
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.8e-59 232.6 213 56.8
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 2.8e-59 232.6 220 55.5
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 6.1e-59 231.5 212 57.5
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 8.0e-59 231.1 214 57.0
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 8.0e-59 231.1 215 56.7
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 8.0e-59 231.1 215 56.7
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.8e-58 229.9 216 56.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.8e-58 229.9 215 56.3
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 2.3e-58 229.6 216 57.4
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 2.3e-58 229.6 214 56.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 3.0e-58 229.2 211 66.4
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 3.4e-57 225.7 215 55.8
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 1.7e-56 223.4 155 71.0
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 1.4e-55 220.3 207 56.0
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.8e-55 219.9 156 70.5
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 3.2e-55 219.2 204 56.9
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 3.2e-55 219.2 157 69.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 9.2e-55 217.6 211 53.1
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 2.7e-54 216.1 207 55.6
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 2.3e-53 213.0 220 52.3
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 5.0e-53 211.8 201 56.2
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-52 210.7 210 57.1
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 1.1e-52 210.7 210 57.1
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 5.6e-52 208.4 214 53.3
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 5.6e-52 208.4 218 54.6
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 9.5e-52 207.6 211 61.1
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.4e-50 203.8 159 64.8
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 8.3e-48 194.5 217 49.8
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 1.4e-47 193.7 211 47.9
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 5.4e-47 191.8 217 49.8
Gohir.D04G115201 Gossypium hirsutum HOM05D005542 ORTHO05D006708 7.8e-46 188.0 213 62.9
Nitab4.5_0007806g0040 Nicotiana tabacum HOM05D005542 ORTHO05D006708 8.6e-45 184.5 220 59.5
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 5.6e-44 181.8 188 51.1
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 5.6e-44 181.8 210 46.2
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 7.3e-44 181.4 211 47.9
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 7.3e-44 181.4 136 65.4
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.1e-42 177.6 127 67.7
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.4e-42 177.2 129 69.0
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 4.4e-41 172.2 210 44.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 1.9e-39 166.8 213 41.8
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 3.2e-39 166.0 214 40.7
VMungo0720G1693 Vigna mungo HOM05D005542 ORTHO05D006708 2.1e-38 163.3 127 63.0
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 2.7e-38 162.9 166 60.2
Gorai.009G419800 Gossypium raimondii HOM05D005542 ORTHO05D006708 3.9e-37 159.1 212 59.0
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 1.1e-36 157.5 171 49.7
Lalb_Chr06g0171481 Lupinus albus HOM05D005542 ORTHO05D006708 3.1e-34 149.4 211 52.1
Rhsim04G0149700 Rhododendron simsii HOM05D005542 ORTHO05D006708 2.4e-31 139.8 94 70.2
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 6.0e-30 135.2 204 41.2
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.3e-29 134.0 163 49.7
ECA233G4004 Erigeron canadensis HOM05D005542 ORTHO05D006708 1.3e-29 134.0 92 69.6
Cpa.g.c48297 Carica papaya HOM05D005542 ORTHO05D006708 4.3e-20 102.4 101 78.2
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 1.4e-10 70.9 140 39.3


User provided reference genes

Program Settings