Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 3.7e-27 124.0 57 100.0
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.7e-24 115.2 57 87.7
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 2.5e-23 111.3 57 82.5
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 3.2e-23 110.9 55 87.3
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.1e-23 109.8 53 92.5
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 9.3e-23 109.4 57 84.2
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 1.6e-22 108.6 57 82.5
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 2.1e-22 108.2 57 82.5
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-22 107.8 56 85.7
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 2.7e-22 107.8 56 85.7
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 3.5e-22 107.5 56 83.9
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 3.5e-22 107.5 57 82.5
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 4.6e-22 107.1 55 85.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 6.0e-22 106.7 53 88.7
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 6.0e-22 106.7 54 87.0
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 7.9e-22 106.3 56 80.4
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.0e-21 105.9 55 85.5
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.3e-21 105.5 57 82.5
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.3e-21 105.5 54 85.2
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.3e-21 105.5 55 83.6
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 1.8e-21 105.1 53 88.7
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.0e-21 104.4 54 83.3
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.1e-21 103.6 53 84.9
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 5.1e-21 103.6 53 84.9
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 6.7e-21 103.2 53 83.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 8.7e-21 102.8 54 83.3
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 1.1e-20 102.4 55 81.8
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.1e-20 102.4 53 84.9
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.5e-20 102.1 52 88.5
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.5e-20 102.1 55 83.6
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.5e-20 102.1 52 88.5
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.5e-20 102.1 55 83.6
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 1.9e-20 101.7 56 75.0
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.5e-20 101.3 53 81.1
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.3e-20 100.9 52 86.5
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 4.3e-20 100.5 55 81.8
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 4.3e-20 100.5 55 80.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 5.7e-20 100.1 55 80.0
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 7.4e-20 99.8 54 81.5
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.7e-20 99.4 53 83.0
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.3e-19 99.0 53 81.1
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.3e-19 99.0 55 76.4
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.3e-19 99.0 55 76.4
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.3e-19 99.0 52 84.6
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.6e-19 98.6 53 79.2
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.6e-19 98.6 53 79.2
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 1.6e-19 98.6 53 79.2
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.6e-19 98.6 53 79.2
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 2.8e-19 97.8 53 79.2
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 2.8e-19 97.8 53 79.2
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 2.8e-19 97.8 56 76.8
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 6.3e-19 96.7 57 73.7
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 8.2e-19 96.3 49 87.8
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.1e-18 95.9 52 78.8
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.1e-18 95.9 53 79.2
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 1.4e-18 95.5 56 71.4
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 3.1e-18 94.4 56 73.2
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 4.1e-18 94.0 55 72.7
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 5.3e-18 93.6 55 72.7
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.9e-18 93.2 56 76.8
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 6.9e-18 93.2 56 76.8
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 6.9e-18 93.2 53 75.5
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 6.9e-18 93.2 59 71.2
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 9.0e-18 92.8 55 70.9
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 9.0e-18 92.8 56 75.0
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 9.0e-18 92.8 55 70.9
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 9.0e-18 92.8 55 69.1
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 9.0e-18 92.8 57 78.9
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 9.0e-18 92.8 59 71.2
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.2e-17 92.4 57 77.2
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 1.5e-17 92.0 55 70.9
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.5e-17 92.0 54 75.9
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 2.0e-17 91.7 55 76.4
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 4.5e-17 90.5 53 73.6
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 5.9e-17 90.1 48 77.1
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 5.9e-17 90.1 49 81.6
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 7.6e-17 89.7 54 74.1
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 1.0e-16 89.4 53 77.4
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 2.9e-16 87.8 54 72.2
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 2.9e-16 87.8 46 80.4
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 3.8e-16 87.4 55 78.2
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.0e-16 87.0 56 71.4
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 5.0e-16 87.0 52 76.9
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.1e-15 85.9 50 74.0
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 1.1e-15 85.9 50 74.0
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 1.4e-15 85.5 49 71.4
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 5.5e-15 83.6 55 69.1
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 1.2e-14 82.4 55 70.9
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.6e-14 82.0 57 70.2
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.6e-14 80.5 95 46.3
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 4.6e-14 80.5 46 82.6
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.4e-13 79.0 50 64.0
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 1.8e-13 78.6 50 74.0
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 8.8e-13 76.3 53 66.0
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 2.2e-11 71.6 58 65.5
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 2.8e-11 71.2 55 58.2
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 3.7e-11 70.9 84 46.4
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.7e-11 70.9 34 85.3
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 6.3e-11 70.1 50 68.0
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 5.3e-10 67.0 31 87.1
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 9.1e-10 66.2 28 100.0
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.6e-09 64.7 31 90.3
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 2.6e-09 64.7 55 56.4
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.6e-09 64.7 62 53.2
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.3e-08 62.4 31 87.1
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 5.0e-08 60.5 44 59.1
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 1.9e-07 58.5 31 77.4
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.2e-07 57.8 79 40.5
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.2e-07 57.8 79 40.5
Pp3c4_25750 Physcomitrium patens HOM05D006514 ORTHO05D008138 4.2e-07 57.4 47 53.2
MD12G1007100 Malus domestica HOM05D006514 ORTHO05D008138 5.5e-07 57.0 32 71.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 1.2e-06 55.8 35 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3660 Anthoceros agrestis HOM05D006514 ORTHO05D008138 2.1e-06 55.1 53 54.7
Pp3c10_13010 Physcomitrium patens HOM05D006514 ORTHO05D008138 2.7e-06 54.7 44 54.5


User provided reference genes

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