Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0701 Punica granatum HOM05D004404 ORTHO05D005070 6.6e-74 280.8 161 100.0
Manes.09G153100 Manihot esculenta HOM05D004404 ORTHO05D005070 1.9e-36 156.4 162 65.4
Potri.005G053400 Populus trichocarpa HOM05D004404 ORTHO05D005070 4.2e-36 155.2 163 62.0
Atru.chr2.818 Acer truncatum HOM05D004404 ORTHO05D005070 2.7e-35 152.5 168 63.7
CiPaw.08G123500 Carya illinoinensis HOM05D004404 ORTHO05D005070 7.9e-35 151.0 142 65.5
Duzib177G0223 Durio zibethinus HOM05D004404 ORTHO05D005070 5.1e-34 148.3 157 62.4
Gohir.D13G175500 Gossypium hirsutum HOM05D004404 ORTHO05D005070 6.7e-34 147.9 164 62.2
Gorai.013G200900 Gossypium raimondii HOM05D004404 ORTHO05D005070 8.7e-34 147.5 164 62.2
Cpa.g.sc117.91 Carica papaya HOM05D004404 ORTHO05D005070 3.3e-33 145.6 161 59.6
RcHm_v2.0_Chr3g0451121 Rosa chinensis HOM05D004404 ORTHO05D005070 9.7e-33 144.1 164 61.0
Duzib106G1455 Durio zibethinus HOM05D004404 ORTHO05D005070 1.6e-32 143.3 164 59.8
Ciclev10002770m.g Citrus clementina HOM05D004404 ORTHO05D005070 6.3e-32 141.4 169 59.8
FvH4_6g02920 Fragaria vesca HOM05D004404 ORTHO05D005070 6.3e-32 141.4 163 60.7
FAN05G1086 Fragaria x ananassa HOM05D004404 ORTHO05D005070 6.3e-32 141.4 163 60.7
FAN09G2523 Fragaria x ananassa HOM05D004404 ORTHO05D005070 6.3e-32 141.4 163 60.7
FAN14G0219 Fragaria x ananassa HOM05D004404 ORTHO05D005070 6.3e-32 141.4 163 60.7
FAN02G1710 Fragaria x ananassa HOM05D004404 ORTHO05D005070 4.1e-31 138.7 163 60.1
MD04G1224600 Malus domestica HOM05D004404 ORTHO05D005070 6.9e-31 137.9 162 58.0
Manes.08G134600 Manihot esculenta HOM05D004404 ORTHO05D005070 9.0e-31 137.5 161 62.7
MD12G1241300 Malus domestica HOM05D004404 ORTHO05D005070 1.5e-30 136.7 170 58.2
Thecc.05G283400 Theobroma cacao HOM05D004404 ORTHO05D005070 2.0e-30 136.3 163 60.1
Haze_04360 Corylus avellana HOM05D004404 ORTHO05D005070 5.9e-30 134.8 190 53.7
QL03p025881 Quercus lobata HOM05D004404 ORTHO05D005070 3.8e-29 132.1 125 64.0
TAR362G1272 Trochodendron aralioides HOM05D004404 ORTHO05D005070 6.5e-29 131.3 161 57.1
MELO3C015378.2 Cucumis melo HOM05D004404 ORTHO05D005070 1.1e-28 130.6 163 55.2
Dinv10012 Davidia involucrata HOM05D004404 ORTHO05D005070 1.1e-28 130.6 148 60.1
Sed0025331 Sechium edule HOM05D004404 ORTHO05D005070 1.1e-28 130.6 158 54.4
THA.LOC104821674 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 1.4e-28 130.2 144 60.4
QL03p026586 Quercus lobata HOM05D004404 ORTHO05D005070 2.5e-28 129.4 121 64.5
VMungo0540G1464 Vigna mungo HOM05D004404 ORTHO05D005070 4.2e-28 128.6 111 71.2
CsaV3_1G039570 Cucumis sativus L. HOM05D004404 ORTHO05D005070 7.2e-28 127.9 163 54.6
Sed0023665 Sechium edule HOM05D004404 ORTHO05D005070 1.2e-27 127.1 158 51.9
Phvul.006G101800 Phaseolus vulgaris HOM05D004404 ORTHO05D005070 1.6e-27 126.7 142 59.9
Sed0027735 Sechium edule HOM05D004404 ORTHO05D005070 2.7e-27 125.9 160 56.9
COL.COLO4_15349 Corchorus olitorius HOM05D004404 ORTHO05D005070 4.6e-27 125.2 184 52.2
Aqoxy5G00363 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 7.9e-27 124.4 150 57.3
Glyma.03G247200 Glycine max HOM05D004404 ORTHO05D005070 7.9e-27 124.4 138 61.6
Cc02_g30710 Coffea canephora HOM05D004404 ORTHO05D005070 1.0e-26 124.0 111 70.3
vmacro13827 Vaccinium macrocarpon HOM05D004404 ORTHO05D005070 1.3e-26 123.6 135 60.0
TWI56G0209 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.8e-26 123.2 149 57.7
Hma1.2p1_0817F.1_g223110 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 2.3e-26 122.9 163 54.0
GSVIVG01021788001 Vitis vinifera HOM05D004404 ORTHO05D005070 2.3e-26 122.9 149 57.0
TAR365G1136 Trochodendron aralioides HOM05D004404 ORTHO05D005070 3.0e-26 122.5 153 54.9
Actinidia32805 Actinidia chinensis HOM05D004404 ORTHO05D005070 3.9e-26 122.1 93 73.1
Glyma.19G244900 Glycine max HOM05D004404 ORTHO05D005070 3.9e-26 122.1 94 75.5
Hma1.2p1_0083F.1_g042910 Hydrangea macrophylla HOM05D004404 ORTHO05D005070 5.1e-26 121.7 158 57.0
Nn1g02537 Nelumbo nucifera HOM05D004404 ORTHO05D005070 5.1e-26 121.7 161 54.0
TPR.G6977 Trifolium pratense HOM05D004404 ORTHO05D005070 5.1e-26 121.7 92 78.3
arahy.Tifrunner.gnm1.ann1.E7WHUM Arachis hypogaea HOM05D004404 ORTHO05D005070 6.7e-26 121.3 165 52.7
TAR633G0732 Trochodendron aralioides HOM05D004404 ORTHO05D005070 1.1e-25 120.6 160 55.0
Aa31LG11G8580 Aethionema arabicum HOM05D004404 ORTHO05D005070 1.5e-25 120.2 171 52.6
Medtr7g115180 Medicago truncatula HOM05D004404 ORTHO05D005070 1.5e-25 120.2 139 60.4
Psat3g007120 Pisum sativum HOM05D004404 ORTHO05D005070 1.9e-25 119.8 162 53.1
TWI12G0609 Tripterygium wilfordii HOM05D004404 ORTHO05D005070 1.9e-25 119.8 153 55.6
arahy.Tifrunner.gnm1.ann1.Z087RK Arachis hypogaea HOM05D004404 ORTHO05D005070 2.5e-25 119.4 158 52.5
Carub.0006s2600 Capsella rubella HOM05D004404 ORTHO05D005070 2.5e-25 119.4 149 55.0
Lj1g0028137 Lotus japonicus HOM05D004404 ORTHO05D005070 3.3e-25 119.0 163 55.8
Sed0015873 Sechium edule HOM05D004404 ORTHO05D005070 3.3e-25 119.0 125 56.8
CARHR185320 Cardamine hirsuta HOM05D004404 ORTHO05D005070 4.3e-25 118.6 149 54.4
DCAR_009267 Daucus carota HOM05D004404 ORTHO05D005070 4.3e-25 118.6 159 56.0
Gohir.A13G170100 Gossypium hirsutum HOM05D004404 ORTHO05D005070 4.3e-25 118.6 122 62.3
Ca_09422_v3 Cicer arietinum L. HOM05D001346 ORTHO05D001205 5.7e-25 118.2 151 55.6
Hund06970 Selenicereus undatus HOM05D004404 ORTHO05D005070 5.7e-25 118.2 165 57.0
THA.LOC104805820 Tarenaya hassleriana HOM05D004404 ORTHO05D005070 5.7e-25 118.2 169 52.1
HanXRQChr05g0158351 Helianthus annuus HOM05D004404 ORTHO05D005070 7.4e-25 117.9 99 70.7
Lsat_1_v5_gn_5_40280 Lactuca sativa HOM05D004404 ORTHO05D005070 7.4e-25 117.9 167 50.9
Nitab4.5_0003279g0050 Nicotiana tabacum HOM05D004404 ORTHO05D005070 9.7e-25 117.5 144 56.2
MBI04_g08412_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 1.3e-24 117.1 162 53.1
Lalb_Chr02g0148831 Lupinus albus HOM05D004404 ORTHO05D005070 1.7e-24 116.7 160 55.0
Medtr1g080910 Medicago truncatula HOM05D004404 ORTHO05D005070 2.2e-24 116.3 95 70.5
BraA06t26722Z Brassica rapa HOM05D004404 ORTHO05D005070 2.8e-24 115.9 145 53.8
Rhsim07G0075300 Rhododendron simsii HOM05D004404 ORTHO05D005070 2.8e-24 115.9 112 65.2
SGA_v2.0_scaffold80G25905 Striga asiatica HOM05D004404 ORTHO05D005070 2.8e-24 115.9 159 52.8
Nitab4.5_0008996g0030 Nicotiana tabacum HOM05D004404 ORTHO05D005070 3.7e-24 115.5 167 50.9
BcaB04g19631 Brassica carinata HOM05D004404 ORTHO05D005070 4.8e-24 115.2 144 56.2
Glyma.10G162200 Glycine max HOM05D004404 ORTHO05D005070 4.8e-24 115.2 134 53.0
BcaC04g23722 Brassica carinata HOM05D004404 ORTHO05D005070 6.3e-24 114.8 148 52.7
BcaC06g30686 Brassica carinata HOM05D004404 ORTHO05D005070 6.3e-24 114.8 150 56.0
C09p05370 Brassica napus HOM05D004404 ORTHO05D005070 6.3e-24 114.8 148 52.7
BolC9t53465H Brassica oleracea HOM05D004404 ORTHO05D005070 6.3e-24 114.8 148 52.7
Oeu038443.2 Olea europaea HOM05D004404 ORTHO05D005070 6.3e-24 114.8 121 62.8
A09p04970 Brassica napus HOM05D004404 ORTHO05D005070 8.2e-24 114.4 149 55.7
COL.COLO4_00126 Corchorus olitorius HOM05D004404 ORTHO05D005070 8.2e-24 114.4 112 62.5
Peaxi162Scf00282g00419 Petunia axillaris HOM05D004404 ORTHO05D005070 8.2e-24 114.4 161 53.4
A06p38070 Brassica napus HOM05D004404 ORTHO05D005070 1.1e-23 114.0 145 51.7
DCAR_006653 Daucus carota HOM05D004404 ORTHO05D005070 1.1e-23 114.0 153 54.2
Thhalv10005085m.g Eutrema salsugineum HOM05D004404 ORTHO05D005070 1.1e-23 114.0 148 55.4
Sp2g20060 Schrenkiella parvula HOM05D004404 ORTHO05D005070 1.1e-23 114.0 149 55.7
AT5G28750 Arabidopsis thaliana HOM05D004404 ORTHO05D005070 1.4e-23 113.6 158 51.9
Sabra13G0037800 Salix brachista HOM05D004404 ORTHO05D005070 1.4e-23 113.6 120 63.3
Lalb_Chr21g0310981 Lupinus albus HOM05D004404 ORTHO05D005070 1.8e-23 113.2 154 50.0
Ca_10045_v3 Cicer arietinum L. HOM05D004404 ORTHO05D005070 2.4e-23 112.8 161 51.6
Peaxi162Scf00071g00832 Petunia axillaris HOM05D004404 ORTHO05D005070 2.4e-23 112.8 158 50.6
ECA246G2005 Erigeron canadensis HOM05D004404 ORTHO05D005070 3.1e-23 112.5 103 68.0
Cfa006425 Carpinus fangiana HOM05D004404 ORTHO05D005070 4.1e-23 112.1 164 53.0
AUR62001008 Chenopodium quinoa HOM05D004404 ORTHO05D005070 4.1e-23 112.1 95 68.4
Solyc01g097310.3 Solanum lycopersicum HOM05D004404 ORTHO05D005070 4.1e-23 112.1 147 54.4
AL6G40780 Arabidopsis lyrata HOM05D004404 ORTHO05D005070 5.3e-23 111.7 158 53.2
Migut.N01913 Erythranthe guttata HOM05D004404 ORTHO05D005070 5.3e-23 111.7 155 50.3
Lj5g0014543 Lotus japonicus HOM05D004404 ORTHO05D005070 5.3e-23 111.7 146 52.7
Sopen01g040980 Solanum pennellii HOM05D004404 ORTHO05D005070 5.3e-23 111.7 161 52.8
Ah.04g162340 Amaranthus hybridus HOM05D004404 ORTHO05D005070 6.9e-23 111.3 156 51.9
CAN.G134.95 Capsicum annuum HOM05D004404 ORTHO05D005070 6.9e-23 111.3 167 52.1
Migut.O00778 Erythranthe guttata HOM05D004404 ORTHO05D005070 6.9e-23 111.3 159 52.8
C02p57620 Brassica napus HOM05D004404 ORTHO05D005070 9.1e-23 110.9 141 56.0
BolC7t44551H Brassica oleracea HOM05D004404 ORTHO05D005070 1.5e-22 110.2 148 52.7
EL10Ac4g09141 Beta vulgaris HOM05D004404 ORTHO05D005070 2.0e-22 109.8 163 52.1
Psat6g144600 Pisum sativum HOM05D004404 ORTHO05D005070 2.0e-22 109.8 155 51.0
BcaNung02110 Brassica carinata HOM05D004404 ORTHO05D005070 2.6e-22 109.4 149 52.3
C07p40140 Brassica napus HOM05D004404 ORTHO05D005070 2.6e-22 109.4 149 52.3
ECA240G2961 Erigeron canadensis HOM05D004404 ORTHO05D005070 2.6e-22 109.4 112 63.4
CDE07G0487 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 4.5e-22 108.6 100 65.0
TPR.G12949 Trifolium pratense HOM05D001346 ORTHO05D001205 5.9e-22 108.2 159 50.3
Sc09g0003920 Simmondsia chinensis HOM05D004404 ORTHO05D005070 1.0e-21 107.5 155 54.2
BolC2t11835H Brassica oleracea HOM05D004404 ORTHO05D005070 5.0e-21 105.1 108 59.3
ATR0665G151 Amborella trichopoda HOM05D004404 ORTHO05D005070 6.5e-21 104.8 148 50.7
Hund22096 Selenicereus undatus HOM05D004404 ORTHO05D005070 6.5e-21 104.8 159 53.5
HPP92_017518 Vanilla planifolia HOM05D004404 ORTHO05D005070 1.4e-20 103.6 159 49.7
Nitab4.5_0001592g0040 Nicotiana tabacum HOM05D004404 ORTHO05D005070 1.9e-20 103.2 163 48.5
Lsat_1_v5_gn_8_115981 Lactuca sativa HOM05D004404 ORTHO05D005070 4.2e-20 102.1 158 49.4
PSO210G4542 Papaver somniferum HOM05D004404 ORTHO05D005070 5.5e-20 101.7 153 43.8
PSO461G0019 Papaver somniferum HOM05D004404 ORTHO05D005070 9.4e-20 100.9 153 43.1
Prupe.6G343300 Prunus persica HOM05D004404 ORTHO05D005070 9.4e-20 100.9 164 50.0
Migut.B01092 Erythranthe guttata HOM05D004404 ORTHO05D005070 1.2e-19 100.5 138 52.9
unitig_899.g14740 Utricularia gibba HOM05D000778 ORTHO05D005070 2.1e-19 99.8 157 51.0
MSTRG.28017 Avicennia marina HOM05D004404 ORTHO05D005070 3.6e-19 99.0 162 48.1
Dinv04734 Davidia involucrata HOM05D004404 ORTHO05D005070 3.6e-19 99.0 120 58.3
Potri.013G040900 Populus trichocarpa HOM05D004404 ORTHO05D005070 4.7e-19 98.6 160 49.4
CDE04G3433 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 6.1e-19 98.2 162 46.9
MBI11_g15915_MAGBIO Magnolia biondii HOM05D004404 ORTHO05D005070 6.1e-19 98.2 160 48.8
A02p38290 Brassica napus HOM05D004404 ORTHO05D005070 1.4e-18 97.1 64 75.0
ClCG03G016400 Citrullus lanatus HOM05D004404 ORTHO05D005070 1.4e-18 97.1 211 40.8
SEGI_08397 Sequoiadendron giganteum HOM05D004404 ORTHO05D005070 1.4e-18 97.1 115 56.5
Mapoly0001s0151 Marchantia polymorpha HOM05D004404 ORTHO05D005070 3.0e-18 95.9 94 59.6
Oeu016441.1 Olea europaea HOM05D004404 ORTHO05D005070 3.0e-18 95.9 110 54.5
HanXRQChr09g0258871 Helianthus annuus HOM05D004404 ORTHO05D005070 2.0e-17 93.2 87 58.6
Zm00001eb218840 Zea mays HOM05D004404 ORTHO05D005070 2.6e-17 92.8 162 46.3
PGSC0003DMG400019456 Solanum tuberosum HOM05D004404 ORTHO05D005070 4.4e-17 92.0 187 42.2
Aqoxy2G03510 Aquilegia oxysepala HOM05D004404 ORTHO05D005070 7.4e-17 91.3 84 57.1
CDE07G0557 Ceratophyllum demersum HOM05D004404 ORTHO05D005070 7.4e-17 91.3 153 47.7
Oeu027474.1 Olea europaea HOM05D004404 ORTHO05D005070 1.3e-16 90.5 94 58.5
MSTRG.20447 Avicennia marina HOM05D004404 ORTHO05D005070 1.7e-16 90.1 108 55.6
SGA_v2.0_scaffold81G26090 Striga asiatica HOM05D004404 ORTHO05D005070 2.2e-16 89.7 115 54.8
BcaC03g17750 Brassica carinata HOM05D004404 ORTHO05D005070 2.8e-16 89.4 140 48.6
Os03g0634000 Oryza sativa ssp. japonica HOM05D004404 ORTHO05D005070 3.7e-16 89.0 179 44.7
SMO174G0006 Selaginella moellendorffii HOM05D004404 ORTHO05D005070 3.7e-16 89.0 146 45.9
Cre10.g438550 Chlamydomonas reinhardtii HOM05D004404 ORTHO05D005070 8.2e-16 87.8 115 50.4
SalBow8G4983 Salvia bowleyana HOM05D004404 ORTHO05D005070 1.8e-15 86.7 118 50.8
CBR_g20020 Chara braunii HOM05D004404 ORTHO05D005070 3.1e-15 85.9 96 57.3
Pp3c15_9990 Physcomitrium patens HOM05D004404 ORTHO05D005070 4.1e-15 85.5 141 46.1
AagrBONN_evm.TU.Sc2ySwM_117.2792 Anthoceros agrestis HOM05D004404 ORTHO05D005070 5.3e-15 85.1 91 60.4
MD16G1158600 Malus domestica HOM05D004404 ORTHO05D005070 5.3e-15 85.1 57 75.4
MCO09G790 Micromonas commoda HOM05D004404 ORTHO05D005070 9.1e-15 84.3 99 52.5
Zm00001eb051040 Zea mays HOM05D004404 ORTHO05D005070 1.3e-13 80.5 46 84.8
Pp3c8_14190 Physcomitrium patens HOM05D004404 ORTHO05D005070 6.5e-13 78.2 150 42.7
Glyma.20G224600 Glycine max HOM05D004404 ORTHO05D005070 1.1e-12 77.4 153 41.2
PSO832G3549 Papaver somniferum HOM05D004404 ORTHO05D005070 7.2e-12 74.7 167 43.1
PSO210G4640 Papaver somniferum HOM05D004404 ORTHO05D005070 1.0e-10 70.9 167 41.9
SGA_v2.0_scaffold55G19806 Striga asiatica HOM05D004404 ORTHO05D005070 1.4e-10 70.5 64 64.1
BraA02t08810Z Brassica rapa HOM05D004404 ORTHO05D005070 3.3e-09 65.9 86 55.8
Nitab4.5_0013900g0010 Nicotiana tabacum HOM05D004404 ORTHO05D005070 2.4e-07 59.7 109 45.0
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 7.0e-07 58.2 75 45.3
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.2e-06 57.4 87 44.8
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 1.6e-06 57.0 72 44.4
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 1.6e-06 57.0 105 40.0
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 2.0e-06 56.6 72 47.2
SMO223G0008 Selaginella moellendorffii HOM05D005376 ORTHO05D006481 2.6e-06 56.2 67 44.8
Zm00001eb085050 Zea mays HOM05D005376 ORTHO05D006481 2.6e-06 56.2 97 39.2
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 4.5e-06 55.5 60 53.3
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 7.7e-06 54.7 72 45.8
Zm00001eb421330 Zea mays HOM05D005376 ORTHO05D006481 7.7e-06 54.7 118 35.6


User provided reference genes

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