Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0674 Punica granatum HOM05D007836 ORTHO05D009876 2.2e-35 151.8 78 100.0
Thecc.06G201100 Theobroma cacao HOM05D007836 ORTHO05D009876 2.2e-14 82.0 88 51.1
COL.COLO4_31599 Corchorus olitorius HOM05D007836 ORTHO05D009876 4.9e-14 80.9 83 54.2
QL05p081073 Quercus lobata HOM05D007836 ORTHO05D009876 8.3e-14 80.1 80 50.0
Potri.004G033300 Populus trichocarpa HOM05D007836 ORTHO05D009876 1.1e-13 79.7 84 54.8
Psat1g208960 Pisum sativum HOM05D007836 ORTHO05D009876 4.1e-13 77.8 84 52.4
Sabra04G0019100 Salix brachista HOM05D007836 ORTHO05D009876 9.2e-13 76.6 84 51.2
Medtr2g011690 Medicago truncatula HOM05D007836 ORTHO05D009876 1.2e-12 76.3 84 48.8
Ca_00250_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 5.9e-12 73.9 83 51.8
Ca_29769_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 5.9e-12 73.9 83 51.8
Ca_29839_v3 Cicer arietinum L. HOM05D007836 ORTHO05D009876 5.9e-12 73.9 83 51.8
Cfa000343 Carpinus fangiana HOM05D007836 ORTHO05D009876 7.8e-12 73.6 72 54.2
Haze_06588 Corylus avellana HOM05D007836 ORTHO05D009876 1.0e-11 73.2 72 52.8
TWI38G1692 Tripterygium wilfordii HOM05D007836 ORTHO05D009876 1.0e-11 73.2 77 51.9
TPR.G36842 Trifolium pratense HOM05D007836 ORTHO05D009876 1.7e-11 72.4 81 46.9
CiPaw.10G117600 Carya illinoinensis HOM05D007836 ORTHO05D009876 2.9e-11 71.6 80 46.2
Ciclev10017323m.g Citrus clementina HOM05D007836 ORTHO05D009876 8.6e-11 70.1 82 47.6
Potri.011G041700 Populus trichocarpa HOM05D007836 ORTHO05D009876 8.6e-11 70.1 86 47.7
Migut.M01222 Erythranthe guttata HOM05D007836 ORTHO05D009876 1.5e-10 69.3 81 44.4
TAR627G0603 Trochodendron aralioides HOM05D007836 ORTHO05D009876 1.5e-10 69.3 87 46.0
Prupe.4G035300 Prunus persica HOM05D007836 ORTHO05D009876 4.3e-10 67.8 81 45.7
Nn1g03860 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.6e-10 67.4 78 47.4
Nn1g03862 Nelumbo nucifera HOM05D007836 ORTHO05D009876 5.6e-10 67.4 78 47.4
Nitab4.5_0000649g0060 Nicotiana tabacum HOM05D007836 ORTHO05D009876 2.8e-09 65.1 80 47.5
TAR629G2038 Trochodendron aralioides HOM05D007836 ORTHO05D009876 2.8e-09 65.1 92 41.3
Gohir.A10G021700 Gossypium hirsutum HOM05D007836 ORTHO05D009876 3.6e-09 64.7 84 44.0
Gorai.011G023600 Gossypium raimondii HOM05D007836 ORTHO05D009876 6.2e-09 63.9 86 43.0
Nitab4.5_0005389g0040 Nicotiana tabacum HOM05D007836 ORTHO05D009876 6.2e-09 63.9 75 49.3
Hma1.2p1_1182F.1_g264760 Hydrangea macrophylla HOM05D007836 ORTHO05D009876 8.0e-09 63.5 79 45.6
Sabra11G0028600 Salix brachista HOM05D007836 ORTHO05D009876 8.0e-09 63.5 76 47.4
Eucgr.L02509 Eucalyptus grandis HOM05D007836 ORTHO05D009876 1.0e-08 63.2 74 54.1
MBI18_g27690_MAGBIO Magnolia biondii HOM05D007836 ORTHO05D009876 1.4e-08 62.8 77 50.6
Eucgr.L02510 Eucalyptus grandis HOM05D007836 ORTHO05D009876 2.3e-08 62.0 74 55.4
Atru.chr10.2022 Acer truncatum HOM05D007836 ORTHO05D009876 3.1e-08 61.6 78 47.4
Rhsim02G0119100 Rhododendron simsii HOM05D007836 ORTHO05D009876 3.1e-08 61.6 71 49.3
Gohir.D10G022500 Gossypium hirsutum HOM05D007836 ORTHO05D009876 8.9e-08 60.1 91 40.7
Manes.16G019800 Manihot esculenta HOM05D007836 ORTHO05D009876 2.0e-07 58.9 75 42.7
Thhalv10009208m.g Eutrema salsugineum HOM05D000831 ORTHO05D000660 4.4e-07 57.8 85 38.8
CARHR256510 Cardamine hirsuta HOM05D000831 ORTHO05D000660 7.5e-07 57.0 82 36.6
Aqoxy1G03904 Aquilegia oxysepala HOM05D007836 ORTHO05D009876 1.3e-06 56.2 75 41.3
AT4G10270 Arabidopsis thaliana HOM05D000831 ORTHO05D000660 2.2e-06 55.5 81 37.0
Glyma.13G247000 Glycine max HOM05D007836 ORTHO05D009876 2.2e-06 55.5 78 39.7
Carub.0001s3183 Capsella rubella HOM05D000831 ORTHO05D000660 2.9e-06 55.1 85 37.6
Manes.12G082300 Manihot esculenta HOM05D000831 ORTHO05D000660 2.9e-06 55.1 80 37.5
CiPaw.03G168900 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.7e-06 54.7 87 36.8
CiPaw.03G169000 Carya illinoinensis HOM05D000831 ORTHO05D000660 3.7e-06 54.7 87 36.8
FAN21G2853 Fragaria x ananassa HOM05D007836 ORTHO05D009876 3.7e-06 54.7 65 52.3
AL6G44110 Arabidopsis lyrata HOM05D000831 ORTHO05D000660 4.9e-06 54.3 81 35.8
Manes.13G152200 Manihot esculenta HOM05D000831 ORTHO05D000660 4.9e-06 54.3 80 33.8
QL08p037077 Quercus lobata HOM05D000831 ORTHO05D000660 4.9e-06 54.3 86 36.0
CiPaw.03G169300 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.4e-06 53.9 87 36.8
CiPaw.03G169400 Carya illinoinensis HOM05D000831 ORTHO05D000660 6.4e-06 53.9 87 36.8
FAN11G3258 Fragaria x ananassa HOM05D007836 ORTHO05D009876 6.4e-06 53.9 90 42.2
Glyma.12G200500 Glycine max HOM05D000831 ORTHO05D000660 6.4e-06 53.9 61 45.9
BraA09t38823Z Brassica rapa HOM05D000831 ORTHO05D000660 8.3e-06 53.5 86 39.5
FvH4_3g03810 Fragaria vesca HOM05D007836 ORTHO05D009876 8.3e-06 53.5 88 40.9
Glyma.13G301700 Glycine max HOM05D000831 ORTHO05D000660 8.3e-06 53.5 61 44.3
Potri.019G117800 Populus trichocarpa HOM05D007836 ORTHO05D009876 8.3e-06 53.5 86 34.9
QL05p081076 Quercus lobata HOM05D007836 ORTHO05D009876 8.3e-06 53.5 74 41.9


User provided reference genes

Program Settings