Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 0.0e+00 1162.5 565 100.0
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 0.0e+00 1092.8 564 91.5
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 0.0e+00 1086.6 564 91.0
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1085.5 563 91.8
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 0.0e+00 1080.9 564 91.1
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 0.0e+00 1079.7 564 90.4
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 0.0e+00 1077.8 565 90.8
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 0.0e+00 1077.4 564 90.4
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 0.0e+00 1077.4 563 91.3
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 0.0e+00 1075.1 563 91.1
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 3.9e-312 1073.9 564 90.6
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 3.9e-312 1073.9 564 89.7
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 1.5e-311 1072.0 564 89.9
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.0e-310 1069.3 564 89.5
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 1.3e-310 1068.9 564 89.5
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.2e-310 1068.1 565 90.3
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 2.9e-310 1067.8 563 90.8
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.4e-309 1065.4 564 89.4
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 565 89.6
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 3.2e-309 1064.3 565 89.7
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 2.1e-308 1061.6 567 89.9
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 8.0e-308 1059.7 564 89.9
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 1.4e-307 1058.9 564 89.0
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.3e-307 1058.1 564 88.8
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.0e-307 1057.7 565 89.6
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 5.2e-307 1057.0 565 89.6
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 562 89.0
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 1.5e-306 1055.4 564 88.8
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.6e-306 1054.7 564 88.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.3e-306 1054.3 565 89.0
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 3.3e-306 1054.3 564 89.0
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 5.7e-306 1053.5 564 87.8
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 7.5e-306 1053.1 562 88.6
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 2.2e-305 1051.6 564 88.8
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 2.8e-305 1051.2 564 88.1
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 4.8e-305 1050.4 564 87.6
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 6.3e-305 1050.0 564 88.1
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.1e-304 1049.3 564 88.5
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.4e-304 1048.9 564 89.2
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 564 88.5
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 2.4e-304 1048.1 564 87.6
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 3.1e-304 1047.7 564 87.9
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 5.3e-304 1047.0 564 88.1
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 564 87.2
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 2.7e-303 1044.6 564 89.0
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 3.5e-303 1044.3 564 87.2
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 5.9e-303 1043.5 562 87.4
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 7.7e-303 1043.1 564 87.9
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 1.3e-302 1042.3 564 87.1
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.7e-302 1042.0 564 87.8
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 564 87.2
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.9e-302 1041.2 564 87.2
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 5.0e-302 1040.4 564 86.7
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 6.5e-302 1040.0 564 88.3
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 8.5e-302 1039.6 565 86.9
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 8.5e-302 1039.6 565 86.9
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.5e-301 1038.1 564 86.7
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 9.4e-301 1036.2 564 87.4
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 3.6e-300 1034.2 564 86.5
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 564 87.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 1.4e-299 1032.3 565 87.6
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 8.8e-299 1029.6 563 86.3
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 2.6e-298 1028.1 562 87.2
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.4e-298 1027.3 565 86.7
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 564 85.8
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 560 86.8
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 2.4e-296 1021.5 564 85.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.1e-296 1020.8 564 85.6
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 7.0e-296 1020.0 565 86.2
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 2.0e-295 1018.5 551 86.9
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.5e-295 1017.7 553 86.4
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 564 84.6
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 5.9e-295 1016.9 557 86.5
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 1.3e-294 1015.8 551 86.4
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.2e-294 1015.0 564 86.2
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 6.5e-294 1013.4 564 85.1
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.1e-293 1012.7 564 84.6
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 3.2e-293 1011.1 568 84.5
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 9.4e-293 1009.6 564 83.7
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.6e-292 1007.7 563 84.9
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.4e-291 1005.7 565 84.6
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 8.8e-291 1003.0 565 84.8
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.5e-290 1002.3 565 84.1
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 565 84.4
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 565 84.6
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 565 84.6
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-290 1001.9 565 84.6
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 7.5e-290 1000.0 565 84.4
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 9.8e-290 999.6 565 83.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 9.8e-290 999.6 565 83.9
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 9.8e-290 999.6 565 84.4
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.8e-289 998.0 534 87.6
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 3.7e-289 997.7 565 83.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 6.3e-289 996.9 565 83.5
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.1e-288 994.2 566 84.3
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 9.2e-288 993.0 566 84.1
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 1.2e-287 992.6 564 83.5
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.6e-287 992.3 566 84.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.7e-286 988.8 565 82.1
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.3e-286 988.4 551 84.6
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 2.3e-286 988.4 565 82.8
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 2.9e-286 988.0 550 84.4
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 5.0e-286 987.3 565 83.0
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 8.6e-286 986.5 565 82.7
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 8.6e-286 986.5 565 82.8
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.6e-286 986.5 550 84.2
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 1.1e-285 986.1 565 82.1
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 9.5e-285 983.0 565 81.8
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 3.6e-284 981.1 565 82.3
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 8.0e-284 979.9 565 82.3
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 1.0e-283 979.5 562 83.8
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.5e-282 975.7 564 81.0
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 2.6e-282 974.9 564 80.7
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 5.7e-282 973.8 564 83.0
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 7.5e-282 973.4 561 82.4
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.4e-280 968.4 564 81.4
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 5.9e-279 963.8 564 81.6
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 3.3e-277 958.0 566 80.7
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 3.3e-277 958.0 564 80.5
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 8.0e-276 953.4 564 80.0
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 4.4e-274 947.6 564 82.1
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 1.1e-272 943.0 564 78.7
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 4.1e-272 941.0 554 79.6
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 7.0e-272 940.3 554 79.2
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.2e-268 929.5 553 79.7
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 9.8e-266 919.8 564 76.6
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 2.2e-265 918.7 565 78.2
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 4.9e-265 917.5 524 82.4
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 7.8e-263 910.2 570 74.6
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 1.2e-258 896.3 564 74.8
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 8.4e-257 890.2 551 76.6
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 7.1e-256 887.1 563 73.4
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 3.9e-254 881.3 558 79.0
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.1e-251 873.2 564 73.9
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 5.2e-251 870.9 565 74.7
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 3.4e-250 868.2 565 74.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 3.3e-245 851.7 564 72.2
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 4.0e-243 844.7 468 83.1
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 8.7e-238 827.0 564 70.6
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 2.5e-224 782.3 419 88.8
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.7e-222 773.9 565 69.4
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 5.7e-213 744.6 425 81.4
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 4.1e-211 738.4 564 66.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 8.0e-191 671.0 373 81.8
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 4.1e-179 632.1 549 54.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-172 610.1 418 73.7
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 4.1e-171 605.5 330 83.3
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 2.5e-168 596.3 293 92.5
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.8e-166 590.1 488 54.9
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 1.5e-165 587.0 523 52.6
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 6.2e-151 538.5 418 59.6
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.8e-140 502.7 564 51.4
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 9.2e-139 498.0 564 51.2
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 2.9e-132 476.5 318 72.3
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 1.3e-129 467.6 469 55.2
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-89 334.0 549 39.3
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 6.3e-87 325.9 214 73.8
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 6.1e-82 309.3 491 35.8
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 3.8e-68 263.5 198 65.2
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 7.2e-67 259.2 198 64.1
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 1.7e-63 248.1 166 69.9
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 1.7e-52 211.5 119 84.9
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.7e-50 203.4 133 78.2
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 7.5e-48 196.1 128 78.1
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 4.9e-47 193.4 128 70.3
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 7.8e-45 186.0 166 62.7
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 3.0e-44 184.1 166 62.7
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 5.0e-44 183.3 166 62.7
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 5.6e-43 179.9 166 62.0
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.2e-37 162.2 324 31.5
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.5e-32 145.2 496 26.8
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.4e-32 144.1 87 74.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 7.1e-30 136.3 213 41.3
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 9.2e-30 136.0 67 86.6
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 1.0e-28 132.5 90 70.0
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 8.6e-28 129.4 76 73.7
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 3.8e-23 114.0 184 41.8
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 3.9e-20 104.0 166 42.2
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 1.1e-17 95.9 103 48.5
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 2.5e-11 74.7 46 67.4
Psat0s3488g0080 Pisum sativum HOM05D002270 ORTHO05D030496 7.1e-06 56.6 40 75.0


User provided reference genes

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