Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0585 Punica granatum HOM05D007509 ORTHO05D009525 2.0e-40 168.7 89 100.0
GSVIVG01033662001 Vitis vinifera HOM05D007509 ORTHO05D009525 1.9e-22 109.0 74 71.6
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 5.5e-22 107.5 81 66.7
CiPaw.09G170600 Carya illinoinensis HOM05D007509 ORTHO05D009525 9.4e-22 106.7 84 65.5
Thecc.05G069500 Theobroma cacao HOM05D007509 ORTHO05D009525 2.7e-21 105.1 85 65.9
MD12G1108800 Malus domestica HOM05D007509 ORTHO05D009525 3.6e-21 104.8 71 69.0
Nn2g13827 Nelumbo nucifera HOM05D007509 ORTHO05D009525 3.6e-21 104.8 81 65.4
Duzib093G1616 Durio zibethinus HOM05D007509 ORTHO05D009525 4.7e-21 104.4 84 64.3
Gohir.A04G071200 Gossypium hirsutum HOM05D007509 ORTHO05D009525 8.0e-21 103.6 76 68.4
Gorai.009G414000 Gossypium raimondii HOM05D007509 ORTHO05D009525 8.0e-21 103.6 76 68.4
Manes.07G043500 Manihot esculenta HOM05D007509 ORTHO05D009525 8.0e-21 103.6 84 65.5
Gohir.D04G109900 Gossypium hirsutum HOM05D007509 ORTHO05D009525 1.0e-20 103.2 76 67.1
FAN09G1001 Fragaria x ananassa HOM05D007509 ORTHO05D009525 1.4e-20 102.8 78 62.8
Nn6g35255 Nelumbo nucifera HOM05D007509 ORTHO05D009525 1.4e-20 102.8 83 61.4
QL07p042864 Quercus lobata HOM05D007509 ORTHO05D009525 1.4e-20 102.8 89 58.4
TAR633G0343 Trochodendron aralioides HOM05D007509 ORTHO05D009525 1.4e-20 102.8 62 74.2
FAN05G4600 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.3e-20 102.1 84 58.3
FAN05G4982 Fragaria x ananassa HOM05D007509 ORTHO05D009525 2.3e-20 102.1 84 58.3
arahy.Tifrunner.gnm1.ann1.KQD9UV Arachis hypogaea HOM05D007509 ORTHO05D009525 4.0e-20 101.3 77 66.2
arahy.Tifrunner.gnm1.ann1.M25UX0 Arachis hypogaea HOM05D007509 ORTHO05D009525 4.0e-20 101.3 77 67.5
arahy.Tifrunner.gnm1.ann1.Z0MF7F Arachis hypogaea HOM05D007509 ORTHO05D009525 4.0e-20 101.3 77 67.5
Dinv35801 Davidia involucrata HOM05D007509 ORTHO05D009525 4.0e-20 101.3 83 65.1
TWI74G1449 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 4.0e-20 101.3 57 80.7
FAN02G1612 Fragaria x ananassa HOM05D007509 ORTHO05D009525 5.2e-20 100.9 78 61.5
Lj5g0013352 Lotus japonicus HOM05D007509 ORTHO05D009525 6.8e-20 100.5 78 65.4
Cc06_g04400 Coffea canephora HOM05D007509 ORTHO05D009525 8.8e-20 100.1 83 60.2
FvH4_6g16590 Fragaria vesca HOM05D007509 ORTHO05D009525 8.8e-20 100.1 78 61.5
FAN14G0331 Fragaria x ananassa HOM05D007509 ORTHO05D009525 8.8e-20 100.1 78 61.5
Medtr7g102320 Medicago truncatula HOM05D007509 ORTHO05D009525 1.5e-19 99.4 72 69.4
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 1.5e-19 99.4 84 58.3
TAR369G0282 Trochodendron aralioides HOM05D007509 ORTHO05D009525 1.5e-19 99.4 83 57.8
Actinidia32487 Actinidia chinensis HOM05D007509 ORTHO05D009525 2.0e-19 99.0 83 62.7
Gohir.A09G145100 Gossypium hirsutum HOM05D007509 ORTHO05D009525 3.4e-19 98.2 84 61.9
RcHm_v2.0_Chr3g0470531 Rosa chinensis HOM05D007509 ORTHO05D009525 7.5e-19 97.1 78 60.3
Rhsim03G0090000 Rhododendron simsii HOM05D007509 ORTHO05D009525 1.3e-18 96.3 85 58.8
Zm00001eb190910 Zea mays HOM05D007509 ORTHO05D009525 1.7e-18 95.9 84 58.3
Cpa.g.sc92.105 Carica papaya HOM05D007509 ORTHO05D009525 2.2e-18 95.5 84 58.3
Gohir.D09G141225 Gossypium hirsutum HOM05D007509 ORTHO05D009525 2.2e-18 95.5 84 61.9
PSO339G5046 Papaver somniferum HOM05D007509 ORTHO05D009525 2.2e-18 95.5 64 70.3
Prupe.7G127400 Prunus persica HOM05D007509 ORTHO05D009525 2.2e-18 95.5 72 63.9
CDE02G4326 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 3.7e-18 94.7 82 57.3
Glyma.10G054000 Glycine max HOM05D007509 ORTHO05D009525 3.7e-18 94.7 56 75.0
ECA246G0714 Erigeron canadensis HOM05D007509 ORTHO05D009525 4.8e-18 94.4 85 60.0
Migut.L01714 Erythranthe guttata HOM05D007509 ORTHO05D009525 4.8e-18 94.4 85 58.8
Os02g0823600 Oryza sativa ssp. japonica HOM05D007509 ORTHO05D009525 4.8e-18 94.4 82 53.7
Gorai.006G162100 Gossypium raimondii HOM05D007509 ORTHO05D009525 6.3e-18 94.0 84 59.5
TWI53G0287 Tripterygium wilfordii HOM05D007509 ORTHO05D009525 6.3e-18 94.0 57 77.2
CANSAT80G0537 Cannabis sativa HOM05D007509 ORTHO05D009525 8.3e-18 93.6 82 56.1
Psat3g041640 Pisum sativum HOM05D007509 ORTHO05D009525 8.3e-18 93.6 60 73.3
Atru.chr8.1768 Acer truncatum HOM05D007509 ORTHO05D009525 1.1e-17 93.2 76 61.8
Actinidia31324 Actinidia chinensis HOM05D007509 ORTHO05D009525 1.8e-17 92.4 85 58.8
Glyma.13G141100 Glycine max HOM05D007509 ORTHO05D009525 1.8e-17 92.4 76 59.2
Lalb_Chr02g0155761 Lupinus albus HOM05D007509 ORTHO05D009525 1.8e-17 92.4 56 76.8
HanXRQChr14g0432941 Helianthus annuus HOM05D007509 ORTHO05D009525 2.4e-17 92.0 88 52.3
Psat6g074800 Pisum sativum HOM05D007509 ORTHO05D009525 2.4e-17 92.0 82 56.1
Aa31LG1G21690 Aethionema arabicum HOM05D007509 ORTHO05D009525 3.1e-17 91.7 82 56.1
Phvul.007G148600 Phaseolus vulgaris HOM05D007509 ORTHO05D009525 3.1e-17 91.7 63 68.3
CDE08G0025 Ceratophyllum demersum HOM05D007509 ORTHO05D009525 5.4e-17 90.9 82 58.5
Ciclev10013275m.g Citrus clementina HOM05D007509 ORTHO05D009525 7.0e-17 90.5 69 62.3
PGSC0003DMG400003867 Solanum tuberosum HOM05D007509 ORTHO05D009525 1.2e-16 89.7 84 54.8
ATR0723G032 Amborella trichopoda HOM05D007509 ORTHO05D009525 1.6e-16 89.4 57 70.2
Peaxi162Scf00722g00034 Petunia axillaris HOM05D007509 ORTHO05D009525 1.6e-16 89.4 56 71.4
TPR.G32808 Trifolium pratense HOM05D001446 ORTHO05D001360 1.6e-16 89.4 75 60.0
EL10Ac4g08317 Beta vulgaris HOM05D007509 ORTHO05D009525 2.0e-16 89.0 86 52.3
MELO3C009368.2 Cucumis melo HOM05D007509 ORTHO05D009525 2.7e-16 88.6 82 53.7
CsaV3_3G036080 Cucumis sativus L. HOM05D007509 ORTHO05D009525 2.7e-16 88.6 82 53.7
vmacro07305 Vaccinium macrocarpon HOM05D007509 ORTHO05D009525 2.7e-16 88.6 93 52.7
Aqoxy2G01711 Aquilegia oxysepala HOM05D007509 ORTHO05D009525 3.5e-16 88.2 88 52.3
Potri.006G122600 Populus trichocarpa HOM05D007509 ORTHO05D009525 3.5e-16 88.2 55 70.9
Carub.0006s0228 Capsella rubella HOM05D007509 ORTHO05D009525 4.5e-16 87.8 76 56.6
Nitab4.5_0004476g0020 Nicotiana tabacum HOM05D007509 ORTHO05D009525 4.5e-16 87.8 83 53.0
Sed0001231 Sechium edule HOM05D007509 ORTHO05D009525 4.5e-16 87.8 57 64.9
AUR62019539 Chenopodium quinoa HOM05D007509 ORTHO05D009525 5.9e-16 87.4 91 51.6
Sopen09g003160 Solanum pennellii HOM05D007509 ORTHO05D009525 7.7e-16 87.0 84 53.6
AUR62036098 Chenopodium quinoa HOM05D007509 ORTHO05D009525 1.0e-15 86.7 85 50.6
Sp6g39270 Schrenkiella parvula HOM05D007509 ORTHO05D009525 1.0e-15 86.7 91 52.7
AT5G03460 Arabidopsis thaliana HOM05D007509 ORTHO05D009525 2.3e-15 85.5 76 53.9
CARHR209880 Cardamine hirsuta HOM05D007509 ORTHO05D009525 2.9e-15 85.1 91 50.5
Solyc09g008335.1 Solanum lycopersicum HOM05D007509 ORTHO05D009525 2.9e-15 85.1 84 53.6
AL6G12840 Arabidopsis lyrata HOM05D007509 ORTHO05D009525 3.8e-15 84.7 76 53.9
Medtr1g063000 Medicago truncatula HOM05D007509 ORTHO05D009525 2.5e-14 82.0 78 56.4
TPR.G31192 Trifolium pratense HOM05D007509 ORTHO05D009525 3.3e-14 81.6 82 51.2
Thhalv10015146m.g Eutrema salsugineum HOM05D007509 ORTHO05D009525 5.5e-14 80.9 77 53.2
C02p01090 Brassica napus HOM05D007509 ORTHO05D009525 1.2e-13 79.7 72 54.2
BolC2t06099H Brassica oleracea HOM05D007509 ORTHO05D009525 1.2e-13 79.7 72 54.2
BraA02t04762Z Brassica rapa HOM05D007509 ORTHO05D009525 1.2e-13 79.7 72 54.2
THA.LOC104816357 Tarenaya hassleriana HOM05D007509 ORTHO05D009525 1.2e-13 79.7 81 49.4
A10p32560 Brassica napus HOM05D007509 ORTHO05D009525 4.7e-13 77.8 84 46.4
BraA10t45291Z Brassica rapa HOM05D007509 ORTHO05D009525 4.7e-13 77.8 84 46.4
BolC9t60072H Brassica oleracea HOM05D007509 ORTHO05D009525 6.8e-12 73.9 84 47.6
BcaC06g32063 Brassica carinata HOM05D007509 ORTHO05D009525 2.6e-11 72.0 84 46.4
C09p73360 Brassica napus HOM05D007509 ORTHO05D009525 5.7e-11 70.9 84 45.2
unitig_0.g681 Utricularia gibba HOM05D007509 ORTHO05D009525 5.7e-11 70.9 46 71.7
DCAR_020813 Daucus carota HOM05D007509 ORTHO05D009525 2.8e-10 68.6 58 62.1
Aa31LG3G2340 Aethionema arabicum HOM05D007509 ORTHO05D009525 1.1e-09 66.6 54 57.4
Sed0008520 Sechium edule HOM05D007509 ORTHO05D009525 1.4e-09 66.2 64 48.4
HPP92_026749 Vanilla planifolia HOM05D007509 ORTHO05D009525 5.4e-09 64.3 41 68.3
SMO147G0160 Selaginella moellendorffii HOM05D007509 ORTHO05D009525 1.2e-08 63.2 48 60.4
Oeu056534.1 Olea europaea HOM05D007509 ORTHO05D009525 2.0e-08 62.4 47 63.8
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 5.9e-08 60.8 52 61.5
TAR627G1182 Trochodendron aralioides HOM05D007509 ORTHO05D008594 5.9e-08 60.8 32 78.1
CiPaw.03G172600 Carya illinoinensis HOM05D007509 ORTHO05D009525 1.0e-07 60.1 82 48.8
BcaB05g21842 Brassica carinata HOM05D007509 ORTHO05D009525 1.7e-07 59.3 51 58.8
BcaB07g30588 Brassica carinata HOM05D007509 ORTHO05D009525 1.7e-07 59.3 66 50.0
Lsat_1_v5_gn_2_30820 Lactuca sativa HOM05D007509 ORTHO05D009525 6.6e-07 57.4 45 55.6


User provided reference genes

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