Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 8.5e-222 773.5 420 100.0
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 2.7e-87 326.6 450 50.0
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 2.3e-86 323.6 437 50.1
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 1.0e-81 308.1 423 53.0
Haze_20630 Corylus avellana HOM05D007360 ORTHO05D008235 7.2e-80 302.0 455 47.5
Cpa.g.sc174.13 Carica papaya HOM05D007360 ORTHO05D008235 2.7e-79 300.1 435 46.4
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 3.4e-77 293.1 430 48.6
Atru.chr8.1896 Acer truncatum HOM05D007360 ORTHO05D008235 4.4e-77 292.7 428 47.0
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 3.1e-75 286.6 431 46.4
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 2.9e-73 280.0 431 45.2
Duzib128G1437 Durio zibethinus HOM05D007360 ORTHO05D008235 8.6e-73 278.5 424 46.9
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 1.6e-71 274.2 426 46.5
Gohir.D04G115000 Gossypium hirsutum HOM05D007360 ORTHO05D008235 2.8e-71 273.5 422 46.4
Gorai.009G419600 Gossypium raimondii HOM05D007360 ORTHO05D008235 6.1e-71 272.3 422 46.2
Gohir.A04G075900 Gossypium hirsutum HOM05D007360 ORTHO05D008235 7.5e-69 265.4 422 45.5
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 4.9e-68 262.7 428 45.3
CsaV3_3G035660 Cucumis sativus L. HOM05D007360 ORTHO05D008235 6.3e-68 262.3 450 42.4
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 1.8e-67 260.8 491 40.9
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 8.6e-65 251.9 437 43.0
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 7.3e-64 248.8 395 46.6
Dinv35727 Davidia involucrata HOM05D007360 ORTHO05D008235 6.1e-63 245.7 460 40.4
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 2.3e-62 243.8 432 44.0
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 5.2e-62 242.7 490 40.0
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 2.6e-61 240.4 421 44.4
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.6e-61 240.4 457 42.2
ClCG10G020460 Citrullus lanatus HOM05D007360 ORTHO05D008235 3.4e-61 240.0 463 40.8
Manes.08G004115 Manihot esculenta HOM05D007360 ORTHO05D008235 3.7e-60 236.5 420 42.4
CANSAT80G2624 Cannabis sativa HOM05D007360 ORTHO05D008235 2.4e-59 233.8 440 41.6
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 7.0e-59 232.3 398 43.5
Hma1.2p1_0111F.1_g053990 Hydrangea macrophylla HOM05D007360 ORTHO05D008235 1.6e-58 231.1 418 43.8
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 4.6e-58 229.6 405 41.5
Oeu060091.1 Olea europaea HOM05D007360 ORTHO05D008235 5.0e-57 226.1 320 48.4
Peaxi162Scf00005g04017 Petunia axillaris HOM05D007360 ORTHO05D008235 4.3e-56 223.0 446 38.8
Nitab4.5_0006156g0020 Nicotiana tabacum HOM05D007360 ORTHO05D008235 1.6e-55 221.1 475 38.7
FAN02G3036 Fragaria x ananassa HOM05D007360 ORTHO05D008235 6.2e-55 219.2 444 42.6
THA.LOC104816327 Tarenaya hassleriana HOM05D007360 ORTHO05D008235 1.4e-54 218.0 437 40.5
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 2.3e-54 217.2 404 46.5
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 4.0e-54 216.5 309 47.2
EL10Ac7g16510 Beta vulgaris HOM05D007360 ORTHO05D008235 2.6e-53 213.8 420 39.0
Manes.12G045236 Manihot esculenta HOM05D007360 ORTHO05D008235 3.4e-53 213.4 388 41.5
Manes.08G004904 Manihot esculenta HOM05D007360 ORTHO05D008235 4.4e-53 213.0 379 42.2
FAN05G5130 Fragaria x ananassa HOM05D007360 ORTHO05D008235 5.8e-53 212.6 436 43.1
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 2.2e-52 210.7 426 41.1
Nitab4.5_0000669g0130 Nicotiana tabacum HOM05D007360 ORTHO05D008235 2.9e-52 210.3 474 38.2
Cc06_g03670 Coffea canephora HOM05D007360 ORTHO05D008235 8.3e-52 208.8 461 35.4
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 1.1e-51 208.4 380 42.4
Manes.08G004132 Manihot esculenta HOM05D007360 ORTHO05D008235 4.1e-51 206.5 422 38.9
Solyc09g007460.4 Solanum lycopersicum HOM05D007360 ORTHO05D008235 4.1e-51 206.5 377 41.4
AL3G20950 Arabidopsis lyrata HOM05D007360 ORTHO05D008235 5.4e-51 206.1 429 40.1
Ah.08g211880 Amaranthus hybridus HOM05D007360 ORTHO05D008235 2.1e-50 204.1 323 44.3
Sp3g08070 Schrenkiella parvula HOM05D007360 ORTHO05D008235 3.5e-50 203.4 443 38.1
Manes.08G004103 Manihot esculenta HOM05D007360 ORTHO05D008235 3.9e-49 199.9 422 37.2
Thhalv10020860m.g Eutrema salsugineum HOM05D007360 ORTHO05D008235 5.1e-49 199.5 446 37.9
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 6.6e-49 199.1 489 37.6
AT3G09730 Arabidopsis thaliana HOM05D007360 ORTHO05D008235 8.6e-49 198.7 440 38.4
Glyma.10G050400 Glycine max HOM05D007360 ORTHO05D008235 8.6e-49 198.7 421 38.0
Phvul.007G164700 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 4.3e-48 196.4 423 37.6
Manes.05G197400 Manihot esculenta HOM05D007360 ORTHO05D008235 2.1e-47 194.1 395 39.2
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.1e-46 191.8 384 40.6
Glyma.13G137900 Glycine max HOM05D007360 ORTHO05D008235 1.4e-46 191.4 425 37.9
BolC1t05436H Brassica oleracea HOM05D007360 ORTHO05D008235 1.8e-46 191.0 434 39.9
Manes.08G004112 Manihot esculenta HOM05D007360 ORTHO05D008235 2.3e-46 190.7 402 38.1
BraA01t04285Z Brassica rapa HOM05D007360 ORTHO05D008235 3.1e-46 190.3 439 39.9
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 4.0e-46 189.9 429 35.4
Manes.08G014114 Manihot esculenta HOM05D007360 ORTHO05D008235 5.2e-46 189.5 403 39.2
Carub.0003s0882 Capsella rubella HOM05D007360 ORTHO05D008235 3.4e-45 186.8 440 37.3
Lalb_Chr02g0156301 Lupinus albus HOM05D007360 ORTHO05D008235 5.8e-45 186.0 425 38.6
A01p42170 Brassica napus HOM05D007360 ORTHO05D008235 8.3e-44 182.2 435 37.7
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 3.2e-43 180.3 439 37.4
Manes.08G004130 Manihot esculenta HOM05D007360 ORTHO05D008235 4.1e-43 179.9 367 39.2
Manes.08G004125 Manihot esculenta HOM05D007360 ORTHO05D008235 1.7e-41 174.5 390 37.7
Sopen00g009140 Solanum pennellii HOM05D007360 ORTHO05D008235 5.1e-41 172.9 268 46.6
CARHR084150 Cardamine hirsuta HOM05D007360 ORTHO05D008235 8.6e-41 172.2 438 37.2
Manes.08G004118 Manihot esculenta HOM05D007360 ORTHO05D008235 8.6e-41 172.2 429 35.4
ECA233G0563 Erigeron canadensis HOM05D007360 ORTHO05D008235 2.5e-40 170.6 386 38.1
Manes.08G004107 Manihot esculenta HOM05D007360 ORTHO05D008235 1.6e-39 167.9 428 34.8
Lj1g0018826 Lotus japonicus HOM05D007360 ORTHO05D008235 2.6e-37 160.6 228 46.5
Lalb_Chr21g0314721 Lupinus albus HOM05D007360 ORTHO05D008235 7.6e-37 159.1 426 35.7
Sabra06G0102600 Salix brachista HOM05D007360 ORTHO05D008235 2.2e-36 157.5 434 37.3
CSS0042376 Camellia sinensis var. sinensis HOM05D007360 ORTHO05D008235 6.4e-36 156.0 523 34.4
Aqoxy4G03227 Aquilegia oxysepala HOM05D007360 ORTHO05D008235 4.2e-35 153.3 306 41.8
Sed0020725 Sechium edule HOM05D007360 ORTHO05D008235 1.2e-34 151.8 297 40.1
VMungo0720G0507 Vigna mungo HOM05D007360 ORTHO05D008235 2.7e-34 150.6 259 43.2
MD04G1105400 Malus domestica HOM05D007360 ORTHO05D008235 6.0e-34 149.4 227 48.0
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 1.7e-33 147.9 382 36.1
Manes.08G004119 Manihot esculenta HOM05D007360 ORTHO05D008235 5.1e-33 146.4 278 40.6
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 1.2e-31 141.7 426 33.3
Manes.05G196900 Manihot esculenta HOM05D007360 ORTHO05D008235 1.2e-31 141.7 233 42.5
Aa31LG3G2160 Aethionema arabicum HOM05D007360 ORTHO05D008235 2.9e-28 130.6 371 35.8
MSTRG.10303 Avicennia marina HOM05D007360 ORTHO05D008235 1.1e-27 128.6 311 34.4
HanXRQChr02g0051971 Helianthus annuus HOM05D007360 ORTHO05D008235 2.8e-23 114.0 277 36.8
Phvul.001G175350 Phaseolus vulgaris HOM05D007360 ORTHO05D008235 8.4e-20 102.4 251 36.7
GSVIVG01025644001 Vitis vinifera HOM05D004499 ORTHO05D004928 1.6e-15 88.2 108 50.9
MD12G1122600 Malus domestica HOM05D007360 ORTHO05D008235 1.8e-14 84.7 118 45.8
Hund20189 Selenicereus undatus HOM05D007360 ORTHO05D008235 7.1e-11 72.8 74 47.3
HanXRQChr02g0051981 Helianthus annuus HOM05D007360 ORTHO05D008235 2.7e-10 70.9 121 43.0
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 6.0e-10 69.7 248 30.2
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 6.7e-09 66.2 241 29.0
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 6.7e-09 66.2 269 26.4
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 8.7e-09 65.9 333 29.7
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 1.1e-08 65.5 249 30.5
Sopen02g018670 Solanum pennellii HOM05D005497 ORTHO05D006733 2.5e-08 64.3 267 26.2
Pp3c12_23920 Physcomitrium patens HOM05D018912 ORTHO05D021275 7.4e-08 62.8 336 25.0
Pp3c3_35360 Physcomitrium patens HOM05D018912 ORTHO05D021275 2.1e-07 61.2 238 28.6
Nitab4.5_0001219g0100 Nicotiana tabacum HOM05D005497 ORTHO05D006733 6.2e-07 59.7 253 27.3
PGSC0003DMG400021201 Solanum tuberosum HOM05D005497 ORTHO05D006733 6.2e-07 59.7 255 26.7
FAN15G1151 Fragaria x ananassa HOM05D005497 ORTHO05D006733 1.4e-06 58.5 242 26.0
Oeu030218.3 Olea europaea HOM05D005497 ORTHO05D006733 1.4e-06 58.5 241 27.8
Haze_21422 Corylus avellana HOM05D005497 ORTHO05D006733 3.1e-06 57.4 265 24.2
Oeu018558.1 Olea europaea HOM05D007360 ORTHO05D008235 4.0e-06 57.0 111 37.8
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 4.0e-06 57.0 260 26.5
Solyc02g069540.3 Solanum lycopersicum HOM05D005497 ORTHO05D006733 4.0e-06 57.0 244 26.2
Rhsim02G0213400 Rhododendron simsii HOM05D005497 ORTHO05D006733 5.3e-06 56.6 276 26.8
Manes.09G079705 Manihot esculenta HOM05D007360 ORTHO05D008235 6.9e-06 56.2 53 58.5
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 6.9e-06 56.2 229 27.1
ClCG05G016330 Citrullus lanatus HOM05D005497 ORTHO05D006733 9.0e-06 55.8 236 26.7
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 9.0e-06 55.8 236 28.0
Oeu063812.1 Olea europaea HOM05D007360 ORTHO05D008235 9.0e-06 55.8 109 38.5


User provided reference genes

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