Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 1.0e-179 633.3 314 100.0
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 3.6e-124 448.7 309 68.6
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 1.3e-118 430.3 314 66.6
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 3.2e-117 425.6 314 67.5
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 3.6e-116 422.2 314 64.6
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 1.0e-115 420.6 314 65.6
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 1.4e-115 420.2 334 63.8
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.8e-115 419.9 312 66.0
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 2.3e-115 419.5 312 66.0
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.0e-115 419.1 314 63.4
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 6.8e-115 417.9 307 67.1
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 6.3e-113 411.4 302 65.6
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.8e-112 409.8 313 63.3
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 7.0e-112 407.9 313 63.3
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 1.6e-111 406.8 311 63.7
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 2.7e-111 406.0 314 63.4
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.5e-111 405.6 307 64.8
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 3.5e-111 405.6 312 65.4
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 4.5e-111 405.2 314 65.6
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 4.5e-111 405.2 307 64.5
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 4.5e-111 405.2 314 64.0
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 5.0e-110 401.7 314 63.4
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 6.5e-110 401.4 307 63.5
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 1.1e-109 400.6 307 62.2
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.1e-109 400.6 313 61.3
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 4.2e-109 398.7 305 63.0
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 1.2e-108 397.1 310 61.9
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 4.7e-108 395.2 312 61.9
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 2.3e-107 392.9 303 63.7
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 3.0e-107 392.5 315 61.9
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 3.0e-107 392.5 308 64.0
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 3.0e-107 392.5 312 59.0
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 4.0e-107 392.1 314 60.8
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 6.8e-107 391.3 312 62.5
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 1.5e-106 390.2 307 61.2
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 2.6e-106 389.4 308 63.3
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 2.6e-106 389.4 308 63.3
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.6e-106 389.4 308 62.3
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 2.6e-106 389.4 309 60.2
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 5.7e-106 388.3 309 60.5
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 7.5e-106 387.9 312 59.0
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.2e-105 386.3 312 63.8
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 6.3e-105 384.8 310 60.3
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 6.3e-105 384.8 310 60.3
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 8.3e-105 384.4 312 63.5
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 8.3e-105 384.4 312 62.2
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 8.3e-105 384.4 331 58.6
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 1.4e-104 383.6 307 60.3
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 1.4e-104 383.6 309 59.9
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 2.4e-104 382.9 310 61.6
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 2.4e-104 382.9 313 61.3
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 4.1e-104 382.1 308 62.0
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 7.0e-104 381.3 308 63.0
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 9.1e-104 380.9 309 63.4
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 1.2e-103 380.6 308 63.0
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 1.2e-103 380.6 311 59.8
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 5.9e-103 378.3 312 58.3
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 1.7e-102 376.7 314 58.6
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 2.3e-102 376.3 314 58.6
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 2.3e-102 376.3 309 58.6
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 8.6e-102 374.4 309 58.9
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 1.5e-101 373.6 305 60.0
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 2.5e-101 372.9 313 55.6
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 3.3e-101 372.5 314 57.0
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 4.3e-101 372.1 321 59.8
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 4.3e-101 372.1 304 60.5
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 4.0e-99 365.5 310 59.4
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 2.6e-98 362.8 315 56.2
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 3.7e-97 359.0 313 55.9
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.1e-96 357.5 279 63.8
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 1.8e-96 356.7 295 58.3
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-95 353.6 309 57.6
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 2.3e-94 349.7 295 58.0
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 1.5e-93 347.1 298 57.7
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.1e-92 343.2 306 57.2
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 6.2e-92 341.7 309 55.0
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 8.0e-92 341.3 268 64.9
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 1.9e-88 330.1 276 62.3
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 6.0e-87 325.1 271 64.6
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.1e-85 320.9 307 54.4
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.2e-84 317.4 269 61.3
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.2e-82 310.8 329 51.7
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 1.5e-82 310.5 308 50.6
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 4.9e-81 305.4 310 52.6
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 8.3e-81 304.7 231 61.0
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 1.6e-79 300.4 309 52.4
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 1.0e-78 297.7 259 56.4
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 6.6e-78 295.0 267 56.2
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 3.1e-75 286.2 244 62.7
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 2.6e-74 283.1 244 59.0
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 1.3e-73 280.8 224 61.6
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.2e-72 276.2 288 52.8
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 5.4e-72 275.4 259 52.5
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 6.0e-71 271.9 224 58.0
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 8.6e-70 268.1 271 52.0
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 2.1e-63 246.9 211 55.9
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 3.5e-63 246.1 319 42.3
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 2.9e-57 226.5 224 51.3
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 4.9e-57 225.7 312 42.6
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 2.4e-56 223.4 199 58.8
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 2.3e-54 216.9 304 38.2
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 6.6e-54 215.3 310 41.3
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 6.2e-52 208.8 154 59.1
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 3.1e-51 206.5 178 56.7
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.4e-50 203.0 320 35.3
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.1e-48 198.0 232 47.0
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 1.0e-46 191.4 212 48.6
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 3.0e-46 189.9 299 35.8
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.1e-40 168.7 157 51.6
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 1.6e-39 167.5 322 32.3
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 3.5e-39 166.4 169 53.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 1.3e-38 164.5 157 56.1
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 4.3e-37 159.5 170 48.2
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 6.9e-35 152.1 256 41.0
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-34 151.0 154 52.6
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.6e-31 141.0 105 61.9
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 6.7e-30 135.6 166 47.0
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.8e-28 130.2 179 44.7
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 1.4e-24 117.9 87 59.8
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.9e-24 117.5 72 65.3
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 2.5e-24 117.1 163 41.1
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 5.1e-22 109.4 76 65.8
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.5e-21 107.8 76 64.5
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 8.2e-20 102.1 142 41.5
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.5e-18 97.8 197 37.1
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 8.5e-17 92.0 118 38.1
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 3.3e-13 80.1 106 44.3
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 4.4e-13 79.7 162 34.0
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 1.8e-11 74.3 70 45.7
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 4.0e-06 56.6 37 67.6


User provided reference genes

Program Settings