Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR004G0539 Punica granatum HOM05D005954 ORTHO05D007347 6.9e-76 287.3 158 100.0
PGR004G0737 Punica granatum HOM05D005954 ORTHO05D007347 6.9e-76 287.3 158 100.0
Eucgr.D00519 Eucalyptus grandis HOM05D005954 ORTHO05D007347 6.5e-42 174.5 159 71.7
Cpa.g.sc7.59 Carica papaya HOM05D005954 ORTHO05D007347 8.5e-42 174.1 164 68.3
Gohir.D06G136500 Gossypium hirsutum HOM05D005954 ORTHO05D007347 1.1e-41 173.7 135 74.8
Gorai.010G158700 Gossypium raimondii HOM05D005954 ORTHO05D007347 1.5e-41 173.3 135 74.8
Dinv04624 Davidia involucrata HOM05D005954 ORTHO05D007347 5.5e-41 171.4 136 72.1
Thecc.06G173000 Theobroma cacao HOM05D005954 ORTHO05D007347 3.6e-40 168.7 162 67.3
TAR626G1287 Trochodendron aralioides HOM05D005954 ORTHO05D007347 3.6e-40 168.7 158 67.1
Ciclev10017015m.g Citrus clementina HOM05D005954 ORTHO05D007347 1.0e-39 167.2 164 65.2
Gohir.D05G158700 Gossypium hirsutum HOM05D005954 ORTHO05D007347 6.8e-39 164.5 157 68.2
Gorai.009G163700 Gossypium raimondii HOM05D005954 ORTHO05D007347 6.8e-39 164.5 157 68.2
Gohir.A06G134004 Gossypium hirsutum HOM05D005954 ORTHO05D007347 8.8e-39 164.1 157 66.9
Gohir.A05G156000 Gossypium hirsutum HOM05D005954 ORTHO05D007347 2.6e-38 162.5 157 68.2
Haze_06257 Corylus avellana HOM05D005954 ORTHO05D007347 2.2e-37 159.5 165 64.8
Nn1g09054 Nelumbo nucifera HOM05D005954 ORTHO05D007347 3.7e-37 158.7 158 65.8
Nitab4.5_0004274g0040 Nicotiana tabacum HOM05D005954 ORTHO05D007347 1.1e-36 157.1 161 63.4
Prupe.4G059500 Prunus persica HOM05D005954 ORTHO05D007347 1.1e-36 157.1 159 65.4
RcHm_v2.0_Chr5g0010351 Rosa chinensis HOM05D005954 ORTHO05D007347 1.4e-36 156.8 158 66.5
Nitab4.5_0000117g0150 Nicotiana tabacum HOM05D005954 ORTHO05D007347 2.4e-36 156.0 161 63.4
Duzib160G0806 Durio zibethinus HOM05D005954 ORTHO05D007347 3.1e-36 155.6 159 67.3
Peaxi162Scf00061g00155 Petunia axillaris HOM05D005954 ORTHO05D007347 3.1e-36 155.6 139 66.9
CSS0014251 Camellia sinensis var. sinensis HOM05D005954 ORTHO05D007347 4.1e-36 155.2 140 67.1
FAN21G0082 Fragaria x ananassa HOM05D005954 ORTHO05D007347 4.1e-36 155.2 158 65.8
C03p75510 Brassica napus HOM05D005954 ORTHO05D007347 9.2e-36 154.1 164 64.6
FvH4_3g07980 Fragaria vesca HOM05D005954 ORTHO05D007347 9.2e-36 154.1 158 65.2
FAN16G0914 Fragaria x ananassa HOM05D005954 ORTHO05D007347 9.2e-36 154.1 158 65.2
Thhalv10008967m.g Eutrema salsugineum HOM05D005954 ORTHO05D007347 1.2e-35 153.7 162 64.2
Potri.011G064800 Populus trichocarpa HOM05D005954 ORTHO05D007347 3.5e-35 152.1 158 62.7
A08p25330 Brassica napus HOM05D005954 ORTHO05D007347 5.9e-35 151.4 164 64.6
BraA08t34485Z Brassica rapa HOM05D005954 ORTHO05D007347 5.9e-35 151.4 164 64.6
Atru.chr10.1690 Acer truncatum HOM05D005954 ORTHO05D007347 1.0e-34 150.6 159 63.5
BcaNung06755 Brassica carinata HOM05D005954 ORTHO05D007347 1.3e-34 150.2 164 63.4
FAN11G0799 Fragaria x ananassa HOM05D005954 ORTHO05D007347 1.7e-34 149.8 158 64.6
MD10G1282300 Malus domestica HOM05D005954 ORTHO05D007347 1.7e-34 149.8 158 62.7
GSVIVG01021193001 Vitis vinifera HOM05D005954 ORTHO05D007347 1.7e-34 149.8 108 78.7
MELO3C007218.2 Cucumis melo HOM05D005954 ORTHO05D007347 2.3e-34 149.4 163 62.6
QL05p046336 Quercus lobata HOM05D005954 ORTHO05D007347 2.3e-34 149.4 164 62.8
THA.LOC104820590 Tarenaya hassleriana HOM05D005954 ORTHO05D007347 2.3e-34 149.4 169 62.1
arahy.Tifrunner.gnm1.ann1.N07IEU Arachis hypogaea HOM05D005954 ORTHO05D007347 2.9e-34 149.1 137 70.1
C07p16610 Brassica napus HOM05D005954 ORTHO05D007347 2.9e-34 149.1 158 63.3
BolC3t19807H Brassica oleracea HOM05D005954 ORTHO05D007347 2.9e-34 149.1 164 63.4
CsaV3_6G050830 Cucumis sativus L. HOM05D005954 ORTHO05D007347 2.9e-34 149.1 160 64.4
Manes.17G054200 Manihot esculenta HOM05D005954 ORTHO05D007347 2.9e-34 149.1 159 63.5
Solyc01g056780.3 Solanum lycopersicum HOM05D005954 ORTHO05D007347 3.8e-34 148.7 159 59.7
Sp1g25010 Schrenkiella parvula HOM05D005954 ORTHO05D007347 8.6e-34 147.5 162 62.3
Manes.16G037400 Manihot esculenta HOM05D005954 ORTHO05D007347 1.5e-33 146.7 159 62.9
BcaNung06433 Brassica carinata HOM05D005954 ORTHO05D007347 1.9e-33 146.4 163 62.6
A09p37340 Brassica napus HOM05D005954 ORTHO05D007347 1.9e-33 146.4 163 63.2
BraA09t39243Z Brassica rapa HOM05D005954 ORTHO05D007347 1.9e-33 146.4 163 63.2
ClCG01G023670 Citrullus lanatus HOM05D005954 ORTHO05D007347 2.5e-33 146.0 159 63.5
BcaB07g32486 Brassica carinata HOM05D005954 ORTHO05D007347 3.3e-33 145.6 163 60.7
AUR62036591 Chenopodium quinoa HOM05D005954 ORTHO05D007347 4.3e-33 145.2 155 63.9
AL1G42790 Arabidopsis lyrata HOM05D005954 ORTHO05D007347 7.3e-33 144.4 163 61.3
MSTRG.14726 Avicennia marina HOM05D005954 ORTHO05D007347 9.5e-33 144.1 154 59.7
Carub.0001s2727 Capsella rubella HOM05D005954 ORTHO05D007347 9.5e-33 144.1 162 61.7
PGSC0003DMG400021493 Solanum tuberosum HOM05D005954 ORTHO05D007347 9.5e-33 144.1 159 58.5
Cc02_g14660 Coffea canephora HOM05D005954 ORTHO05D007347 1.2e-32 143.7 142 63.4
Aa31LG5G21180 Aethionema arabicum HOM05D005954 ORTHO05D007347 2.1e-32 142.9 166 60.8
CARHR028290 Cardamine hirsuta HOM05D005954 ORTHO05D007347 2.1e-32 142.9 163 60.7
Aqoxy1G03187 Aquilegia oxysepala HOM05D005954 ORTHO05D007347 2.8e-32 142.5 154 63.6
AT1G29070 Arabidopsis thaliana HOM05D005954 ORTHO05D007347 4.7e-32 141.7 163 60.1
BcaC05g26922 Brassica carinata HOM05D005954 ORTHO05D007347 4.7e-32 141.7 157 62.4
C05p27750 Brassica napus HOM05D005954 ORTHO05D007347 4.7e-32 141.7 157 62.4
BolC5t31496H Brassica oleracea HOM05D005954 ORTHO05D007347 4.7e-32 141.7 157 62.4
CANSAT11G0094 Cannabis sativa HOM05D005954 ORTHO05D007347 4.7e-32 141.7 164 61.0
TWI38G2142 Tripterygium wilfordii HOM05D005954 ORTHO05D007347 8.0e-32 141.0 160 63.8
arahy.Tifrunner.gnm1.ann1.YBYE48 Arachis hypogaea HOM05D005954 ORTHO05D007347 3.0e-31 139.0 137 68.6
Sed0006910 Sechium edule HOM05D005954 ORTHO05D007347 8.9e-31 137.5 160 60.0
CiPaw.09G068600 Carya illinoinensis HOM05D005954 ORTHO05D007347 5.7e-30 134.8 167 59.3
MD05G1303200 Malus domestica HOM05D005954 ORTHO05D007347 5.7e-30 134.8 158 60.8
Lsat_1_v5_gn_7_23061 Lactuca sativa HOM05D005954 ORTHO05D007347 7.5e-30 134.4 148 61.5
PSO541G3988 Papaver somniferum HOM05D005954 ORTHO05D007347 9.8e-30 134.0 153 57.5
DCAR_007962 Daucus carota HOM05D005954 ORTHO05D007347 1.7e-29 133.3 138 63.8
arahy.Tifrunner.gnm1.ann1.69550A Arachis hypogaea HOM05D005954 ORTHO05D007347 2.2e-29 132.9 124 71.0
CDE05G1458 Ceratophyllum demersum HOM05D005954 ORTHO05D007347 3.7e-29 132.1 138 63.0
PSO675G5672 Papaver somniferum HOM05D005954 ORTHO05D007347 3.7e-29 132.1 153 56.9
Migut.H01450 Erythranthe guttata HOM05D005954 ORTHO05D007347 4.9e-29 131.7 139 57.6
ECA236G0551 Erigeron canadensis HOM05D005954 ORTHO05D007347 6.4e-29 131.3 145 61.4
Ah.09g233660 Amaranthus hybridus HOM05D005954 ORTHO05D007347 8.3e-29 131.0 155 58.1
Cfa000593 Carpinus fangiana HOM05D005954 ORTHO05D007347 8.3e-29 131.0 165 57.6
AUR62031174 Chenopodium quinoa HOM05D005954 ORTHO05D007347 1.4e-28 130.2 155 58.7
Lj6g0020578 Lotus japonicus HOM05D005954 ORTHO05D007347 1.4e-28 130.2 137 65.0
Phvul.006G176900 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.8e-28 129.8 147 56.5
Phvul.006G176980 Phaseolus vulgaris HOM05D005954 ORTHO05D007347 1.8e-28 129.8 147 56.5
Sopen01g025250 Solanum pennellii HOM05D005954 ORTHO05D007347 3.2e-28 129.0 162 56.8
Sabra11G0046600 Salix brachista HOM05D005954 ORTHO05D007347 4.1e-28 128.6 199 49.7
SalBow8G3893 Salvia bowleyana HOM05D005954 ORTHO05D007347 1.6e-27 126.7 158 57.0
HanXRQChr04g0116001 Helianthus annuus HOM05D005954 ORTHO05D007347 4.6e-27 125.2 113 66.4
Glyma.13G230600 Glycine max HOM05D005954 ORTHO05D007347 1.0e-26 124.0 152 57.9
MD16G1032000 Malus domestica HOM05D005954 ORTHO05D007347 3.0e-26 122.5 158 56.3
Glyma.15G082000 Glycine max HOM05D005954 ORTHO05D007347 1.5e-25 120.2 152 56.6
MD10G1067400 Malus domestica HOM05D005954 ORTHO05D007347 2.5e-25 119.4 148 57.4
MBI13_g00561_MAGBIO Magnolia biondii HOM05D005954 ORTHO05D007347 4.3e-25 118.6 149 57.0
EL10Ac8g20509 Beta vulgaris HOM05D005954 ORTHO05D007347 7.3e-25 117.9 160 53.8
CDE02G3841 Ceratophyllum demersum HOM05D005954 ORTHO05D009675 7.3e-25 117.9 113 69.0
Medtr2g015790 Medicago truncatula HOM05D005954 ORTHO05D007347 7.3e-25 117.9 141 55.3
Oeu001090.1 Olea europaea HOM05D005954 ORTHO05D007347 7.3e-25 117.9 108 63.9
SGA_v2.0_scaffold1G00032 Striga asiatica HOM05D005954 ORTHO05D007347 1.2e-24 117.1 158 52.5
Rhsim13G0191500 Rhododendron simsii HOM05D005954 ORTHO05D007347 1.6e-24 116.7 136 55.9
Psat1g199440 Pisum sativum HOM05D005954 ORTHO05D007347 2.1e-24 116.3 145 55.9
TPR.G11659 Trifolium pratense HOM05D005954 ORTHO05D007347 2.1e-24 116.3 142 57.0
COL.COLO4_31320 Corchorus olitorius HOM05D005954 ORTHO05D007347 6.2e-24 114.8 76 81.6
Lj1P1194T69 Lonicera japonica HOM05D005954 ORTHO05D007347 1.0e-23 114.0 86 73.3
Atru.chr10.1684 Acer truncatum HOM05D005954 ORTHO05D007347 1.4e-23 113.6 79 77.2
BcaC06g35397 Brassica carinata HOM05D005954 ORTHO05D007347 3.1e-23 112.5 138 56.5
CAN.G889.12 Capsicum annuum HOM05D005954 ORTHO05D007347 5.2e-23 111.7 161 50.9
Hund23979 Selenicereus undatus HOM05D005954 ORTHO05D007347 1.3e-21 107.1 156 55.8
ATR0602G014 Amborella trichopoda HOM05D005954 ORTHO05D007347 4.9e-21 105.1 118 60.2
vmacro01548 Vaccinium macrocarpon HOM05D005954 ORTHO05D007347 6.4e-21 104.8 140 52.9
Ca_00467_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.4e-20 103.6 94 68.1
Ca_30955_v3 Cicer arietinum L. HOM05D005954 ORTHO05D007347 1.4e-20 103.6 94 68.1
Lalb_Chr20g0121221 Lupinus albus HOM05D005954 ORTHO05D007347 1.4e-20 103.6 66 83.3
unitig_22.g6753 Utricularia gibba HOM05D005954 ORTHO05D007347 1.6e-19 100.1 163 49.1
HPP92_016045 Vanilla planifolia HOM05D005954 ORTHO05D007347 4.6e-19 98.6 89 66.3
Os01g0805000 Oryza sativa ssp. japonica HOM05D005954 ORTHO05D007347 1.3e-18 97.1 147 51.7
Sc05g0007180 Simmondsia chinensis HOM05D005954 ORTHO05D007347 2.3e-18 96.3 73 72.6
Zm00001eb150530 Zea mays HOM05D005954 ORTHO05D007347 1.5e-17 93.6 174 44.3
MD16G1032400 Malus domestica HOM05D005954 ORTHO05D007347 7.3e-17 91.3 107 56.1
CARHR028330 Cardamine hirsuta HOM05D005954 ORTHO05D007347 1.4e-15 87.0 59 78.0
MD16G1032600 Malus domestica HOM05D005954 ORTHO05D007347 6.8e-15 84.7 127 51.2
Pp3c21_6450 Physcomitrium patens HOM05D005954 ORTHO05D007347 9.2e-12 74.3 122 49.2
AagrBONN_evm.TU.Sc2ySwM_117.1983 Anthoceros agrestis HOM05D005954 ORTHO05D007347 7.8e-11 71.2 135 48.1
Pp3c18_19220 Physcomitrium patens HOM05D005954 ORTHO05D007347 1.3e-10 70.5 111 46.8
CBR_g29683 Chara braunii HOM05D005954 ORTHO05D007347 8.6e-10 67.8 112 45.5
SEGI_22528 Sequoiadendron giganteum HOM05D005954 ORTHO05D007347 1.5e-09 67.0 99 48.5
Mapoly0043s0046 Marchantia polymorpha HOM05D005954 ORTHO05D007347 2.5e-09 66.2 123 49.6
Nn3g19836 Nelumbo nucifera HOM05D005954 ORTHO05D007347 4.4e-06 55.5 46 65.2


User provided reference genes

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